Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0026863 Sechium edule HOM05D007590 ORTHO05D007875 3.7e-55 218.0 112 100.0
ClCG07G011620 Citrullus lanatus HOM05D007590 ORTHO05D007875 1.1e-22 110.2 116 59.5
CsaV3_4G006590 Cucumis sativus L. HOM05D007590 ORTHO05D007875 3.1e-22 108.6 114 60.5
MELO3C016294.2 Cucumis melo HOM05D007590 ORTHO05D007875 5.3e-22 107.8 114 58.8
Sed0003477 Sechium edule HOM05D007590 ORTHO05D007875 2.2e-20 102.4 112 56.2
FAN13G0413 Fragaria x ananassa HOM05D007590 ORTHO05D007875 3.3e-16 88.6 123 45.5
FAN04G0970 Fragaria x ananassa HOM05D007590 ORTHO05D007875 9.7e-16 87.0 123 45.5
RcHm_v2.0_Chr7g0194781 Rosa chinensis HOM05D007590 ORTHO05D007875 1.3e-15 86.7 124 44.4
Prupe.5G120200 Prunus persica HOM05D007590 ORTHO05D007875 8.2e-15 84.0 125 43.2
FAN08G0943 Fragaria x ananassa HOM05D007590 ORTHO05D007875 1.4e-14 83.2 123 45.5
Hma1.2p1_1746F.1_g300410 Hydrangea macrophylla HOM05D007590 ORTHO05D007875 1.6e-13 79.7 121 44.6
TAR374G1746 Trochodendron aralioides HOM05D007590 ORTHO05D007875 2.7e-13 79.0 112 47.3
Glyma.01G225600 Glycine max HOM05D007590 ORTHO05D007875 3.5e-13 78.6 109 45.0
Sabra01G0067900 Salix brachista HOM05D007590 ORTHO05D007875 5.9e-13 77.8 123 41.5
TPR.G25602 Trifolium pratense HOM05D007590 ORTHO05D007875 1.7e-12 76.3 113 43.4
Phvul.002G164500 Phaseolus vulgaris HOM05D007590 ORTHO05D007875 2.2e-12 75.9 111 43.2
CDE10G0927 Ceratophyllum demersum HOM05D007590 ORTHO05D007875 2.9e-12 75.5 108 42.6
LjContig00312_ERROPOS870357g0000452 Lotus japonicus HOM05D007590 ORTHO05D007875 3.8e-12 75.1 123 43.9
TAR375G1006 Trochodendron aralioides HOM05D007590 ORTHO05D007875 6.5e-12 74.3 109 42.2
Dinv38831 Davidia involucrata HOM05D005474 ORTHO05D006551 8.5e-12 73.9 113 42.5
Manes.02G009900 Manihot esculenta HOM05D007590 ORTHO05D007875 8.5e-12 73.9 121 41.3
TAR629G1835 Trochodendron aralioides HOM05D007590 ORTHO05D007875 8.5e-12 73.9 109 42.2
Aqoxy5G04230 Aquilegia oxysepala HOM05D007590 ORTHO05D007875 1.5e-11 73.2 115 41.7
Glyma.11G017400 Glycine max HOM05D007590 ORTHO05D007875 1.5e-11 73.2 111 42.3
Potri.001G091500 Populus trichocarpa HOM05D007590 ORTHO05D007875 1.5e-11 73.2 122 40.2
Solyc08g082370.1 Solanum lycopersicum HOM05D007590 ORTHO05D007875 1.5e-11 73.2 116 42.2
Sopen08g030630 Solanum pennellii HOM05D007590 ORTHO05D007875 1.5e-11 73.2 116 42.2
SalBow1G4032 Salvia bowleyana HOM05D007590 ORTHO05D007875 1.9e-11 72.8 107 40.2
SalBow1G6340 Salvia bowleyana HOM05D007590 ORTHO05D007875 1.9e-11 72.8 107 40.2
TAR636G1032 Trochodendron aralioides HOM05D007590 ORTHO05D007875 1.9e-11 72.8 109 45.9
Actinidia22161 Actinidia chinensis HOM05D007590 ORTHO05D007875 2.5e-11 72.4 109 43.1
Manes.02G010000 Manihot esculenta HOM05D007590 ORTHO05D007875 2.5e-11 72.4 117 41.0
Sabra03G0101100 Salix brachista HOM05D007590 ORTHO05D007875 3.2e-11 72.0 122 40.2
CiPaw.11G121300 Carya illinoinensis HOM05D007590 ORTHO05D007875 4.2e-11 71.6 110 40.0
Cc08_g16080 Coffea canephora HOM05D007590 ORTHO05D007875 4.2e-11 71.6 127 40.2
PGSC0003DMG400012280 Solanum tuberosum HOM05D007590 ORTHO05D007875 4.2e-11 71.6 116 43.1
CANSAT21G0370 Cannabis sativa HOM05D007590 ORTHO05D007875 5.5e-11 71.2 127 38.6
Nn1g01873 Nelumbo nucifera HOM05D007590 ORTHO05D007875 5.5e-11 71.2 114 43.0
Cfa012011 Carpinus fangiana HOM05D007590 ORTHO05D007875 7.2e-11 70.9 133 38.3
Nn3g19015 Nelumbo nucifera HOM05D007590 ORTHO05D007875 7.2e-11 70.9 121 39.7
CDE10G0175 Ceratophyllum demersum HOM05D007590 ORTHO05D007875 9.4e-11 70.5 108 42.6
Medtr5g009260 Medicago truncatula HOM05D007590 ORTHO05D007875 9.4e-11 70.5 113 42.5
Lsat_1_v5_gn_6_83961 Lactuca sativa HOM05D007590 ORTHO05D007875 1.2e-10 70.1 119 38.7
Potri.003G140100 Populus trichocarpa HOM05D007590 ORTHO05D007875 1.2e-10 70.1 122 39.3
Lalb_Chr05g0211541 Lupinus albus HOM05D007590 ORTHO05D007875 1.6e-10 69.7 120 40.8
CiPaw.12G082900 Carya illinoinensis HOM05D007590 ORTHO05D007875 2.1e-10 69.3 119 38.7
PGSC0003DMG400005790 Solanum tuberosum HOM05D007590 ORTHO05D007875 2.1e-10 69.3 122 41.0
Duzib205G1174 Durio zibethinus HOM05D007590 ORTHO05D007875 2.7e-10 68.9 120 43.3
TAR629G2201 Trochodendron aralioides HOM05D007590 ORTHO05D007875 2.7e-10 68.9 116 39.7
ATR0602G105 Amborella trichopoda HOM05D007590 ORTHO05D007875 3.6e-10 68.6 126 36.5
HanXRQChr03g0083501 Helianthus annuus HOM05D007590 ORTHO05D007875 3.6e-10 68.6 121 37.2
Sopen08g004200 Solanum pennellii HOM05D007590 ORTHO05D007875 3.6e-10 68.6 122 40.2
QL02p030422 Quercus lobata HOM05D007590 ORTHO05D007875 6.1e-10 67.8 124 36.3
Rhsim02G0243500 Rhododendron simsii HOM05D007590 ORTHO05D007875 8.0e-10 67.4 119 42.9
Ca_24513_v3 Cicer arietinum L. HOM05D007590 ORTHO05D007875 1.4e-09 66.6 112 38.4
Ca_29733_v3 Cicer arietinum L. HOM05D007590 ORTHO05D007875 1.4e-09 66.6 112 38.4
Ciclev10022592m.g Citrus clementina HOM05D007590 ORTHO05D007875 1.4e-09 66.6 116 38.8
CSS0045762 Camellia sinensis var. sinensis HOM05D007590 ORTHO05D007875 3.0e-09 65.5 117 41.9
Gorai.003G079000 Gossypium raimondii HOM05D007590 ORTHO05D007875 4.0e-09 65.1 104 45.2
DCAR_006487 Daucus carota HOM05D007590 ORTHO05D007875 5.2e-09 64.7 125 40.8
MSTRG.11924 Avicennia marina HOM05D007590 ORTHO05D007875 6.8e-09 64.3 118 36.4
Peaxi162Scf00102g00178 Petunia axillaris HOM05D007590 ORTHO05D007875 6.8e-09 64.3 122 38.5
Gohir.D03G083700 Gossypium hirsutum HOM05D007590 ORTHO05D007875 8.8e-09 63.9 104 44.2
Manes.01G049200 Manihot esculenta HOM05D007590 ORTHO05D007875 8.8e-09 63.9 104 42.3
AUR62019841 Chenopodium quinoa HOM05D007590 ORTHO05D007875 1.5e-08 63.2 111 39.6
AUR62010841 Chenopodium quinoa HOM05D007590 ORTHO05D007875 2.0e-08 62.8 116 40.5
Gohir.A02G100200 Gossypium hirsutum HOM05D007590 ORTHO05D007875 2.0e-08 62.8 103 41.7
Peaxi162Scf00074g00097 Petunia axillaris HOM05D007590 ORTHO05D007875 2.0e-08 62.8 105 40.0
Gohir.D12G237700 Gossypium hirsutum HOM05D007590 ORTHO05D007875 2.6e-08 62.4 117 40.2
Gohir.D12G237966 Gossypium hirsutum HOM05D007590 ORTHO05D007875 2.6e-08 62.4 117 40.2
COL.COLO4_10703 Corchorus olitorius HOM05D007590 ORTHO05D007875 3.4e-08 62.0 85 49.4
Gorai.008G254500 Gossypium raimondii HOM05D007590 ORTHO05D007875 3.4e-08 62.0 117 40.2
Lsat_1_v5_gn_3_10720 Lactuca sativa HOM05D007590 ORTHO05D007875 3.4e-08 62.0 124 34.7
Duzib084G0874 Durio zibethinus HOM05D007590 ORTHO05D007875 7.5e-08 60.8 113 40.7
Gohir.A02G100100 Gossypium hirsutum HOM05D007590 ORTHO05D007875 9.8e-08 60.5 104 43.3
MSTRG.25673 Avicennia marina HOM05D007590 ORTHO05D007875 1.3e-07 60.1 119 36.1
Gohir.A12G236500 Gossypium hirsutum HOM05D007590 ORTHO05D007875 1.3e-07 60.1 119 40.3
Ah.12g052560 Amaranthus hybridus HOM05D007590 ORTHO05D007875 1.7e-07 59.7 129 35.7
Thecc.03G298200 Theobroma cacao HOM05D007590 ORTHO05D007875 1.7e-07 59.7 113 41.6
Migut.A00642 Erythranthe guttata HOM05D007590 ORTHO05D007875 2.2e-07 59.3 112 35.7
Duzib068G0682 Durio zibethinus HOM05D007590 ORTHO05D007875 2.8e-07 58.9 113 46.0
Oeu063521.1 Olea europaea HOM05D007590 ORTHO05D007875 3.7e-07 58.5 116 37.1
ATR0602G273 Amborella trichopoda HOM05D026466 ORTHO05D003152 4.8e-07 58.2 91 41.8
EL10Ac5g12916 Beta vulgaris HOM05D007590 ORTHO05D007875 6.3e-07 57.8 80 43.8
CiPaw.12G082700 Carya illinoinensis HOM05D007590 ORTHO05D007875 6.3e-07 57.8 109 41.3
Nitab4.5_0002782g0040 Nicotiana tabacum HOM05D007590 ORTHO05D007875 8.3e-07 57.4 111 36.9
TWI60G0225 Tripterygium wilfordii HOM05D007590 ORTHO05D007875 8.3e-07 57.4 124 35.5
Duzib068G0902 Durio zibethinus HOM05D007590 ORTHO05D007875 1.8e-06 56.2 105 45.7
SGA_v2.0_scaffold305G47972 Striga asiatica HOM05D007590 ORTHO05D007875 2.4e-06 55.8 121 33.9
PGR031G2453 Punica granatum HOM05D007590 ORTHO05D007875 3.1e-06 55.5 138 35.5
HPP92_008631 Vanilla planifolia HOM05D026338 ORTHO05D007875 3.1e-06 55.5 106 38.7
Eucgr.D01739 Eucalyptus grandis HOM05D007590 ORTHO05D007875 5.4e-06 54.7 148 33.1
Cpa.g.sc79.34 Carica papaya HOM05D007590 ORTHO05D007875 9.1e-06 53.9 122 33.6
Thhalv10023875m.g Eutrema salsugineum HOM05D010600 ORTHO05D007875 9.1e-06 53.9 126 35.7


User provided reference genes

Program Settings