Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0026848 Sechium edule HOM05D000963 ORTHO05D005131 6.2e-51 203.8 98 100.0
C06p23110 Brassica napus HOM05D000963 ORTHO05D005131 1.5e-41 172.6 94 89.4
C09p24700 Brassica napus HOM05D000963 ORTHO05D005131 1.5e-41 172.6 94 89.4
BraSC143t45666Z Brassica rapa HOM05D000963 ORTHO05D005131 1.5e-41 172.6 94 89.4
BraSC25t45900Z Brassica rapa HOM05D000963 ORTHO05D005131 1.5e-41 172.6 94 89.4
VMungo0464G1437 Vigna mungo HOM05D000963 ORTHO05D005131 1.5e-41 172.6 93 89.2
VMungo1215G3364 Vigna mungo HOM05D001592 ORTHO05D001533 4.5e-41 171.0 80 100.0
Ca_03776_v3 Cicer arietinum L. HOM05D000963 ORTHO05D005131 1.4e-39 166.0 80 97.5
Ca_03777_v3 Cicer arietinum L. HOM05D000963 ORTHO05D005131 1.4e-39 166.0 80 97.5
arahy.Tifrunner.gnm1.ann1.R4PVYI Arachis hypogaea HOM05D000963 ORTHO05D004715 1.9e-39 165.6 80 97.5
Sopen08g004620 Solanum pennellii HOM05D001396 ORTHO05D000493 5.5e-39 164.1 84 95.2
VMungo0720G2312 Vigna mungo HOM05D000963 ORTHO05D005131 1.2e-38 162.9 80 93.8
Medtr3g035650 Medicago truncatula HOM05D000963 ORTHO05D005131 3.9e-37 157.9 80 95.0
arahy.Tifrunner.gnm1.ann1.A049RL Arachis hypogaea HOM05D000963 ORTHO05D005131 4.3e-36 154.5 80 91.2
Medtr8g040260 Medicago truncatula HOM05D000963 ORTHO05D005131 2.6e-33 145.2 78 88.5
arahy.Tifrunner.gnm1.ann1.LAST4K Arachis hypogaea HOM05D000963 ORTHO05D005131 7.7e-33 143.7 79 83.5
CsaV3_4G036830 Cucumis sativus L. HOM05D000963 ORTHO05D005131 1.9e-31 139.0 79 84.8
arahy.Tifrunner.gnm1.ann1.9M10FC Arachis hypogaea HOM05D000940 ORTHO05D000782 6.1e-30 134.0 76 85.5
Glyma.05G084600 Glycine max HOM05D000963 ORTHO05D005131 7.9e-30 133.7 78 82.1
LjContig00319g0011411 Lotus japonicus HOM05D000963 ORTHO05D005131 7.9e-30 133.7 78 83.3
SGA_v2.0_scaffold140G35502 Striga asiatica HOM05D000963 ORTHO05D005131 1.5e-28 129.4 66 92.4
Gohir.1Z049680 Gossypium hirsutum HOM05D000963 ORTHO05D005131 2.2e-27 125.6 60 100.0
Sc25g0002260 Simmondsia chinensis HOM05D000963 ORTHO05D005131 1.0e-24 116.7 80 73.8
arahy.Tifrunner.gnm1.ann1.7DQW64 Arachis hypogaea HOM05D000963 ORTHO05D005131 1.7e-24 115.9 59 91.5
Sopen11g020200 Solanum pennellii HOM05D000004 ORTHO05D000002 1.5e-23 112.8 61 90.2
Phvul.002G028400 Phaseolus vulgaris HOM05D000963 ORTHO05D005131 7.2e-23 110.5 84 70.2
Solyc00g500039.1 Solanum lycopersicum HOM05D000963 ORTHO05D005131 9.4e-23 110.2 59 89.8
Solyc00g500044.1 Solanum lycopersicum HOM05D000963 ORTHO05D005131 9.4e-23 110.2 59 89.8
Solyc00g500083.1 Solanum lycopersicum HOM05D000963 ORTHO05D005131 9.4e-23 110.2 59 89.8
Solyc00g500301.1 Solanum lycopersicum HOM05D000963 ORTHO05D005131 9.4e-23 110.2 59 89.8
Solyc00g500325.1 Solanum lycopersicum HOM05D000963 ORTHO05D005131 9.4e-23 110.2 59 89.8
arahy.Tifrunner.gnm1.ann1.GV9JXL Arachis hypogaea HOM05D000743 ORTHO05D005131 1.2e-22 109.8 56 92.9
Manes.02G203601 Manihot esculenta HOM05D000963 ORTHO05D005131 1.6e-22 109.4 79 68.4
arahy.Tifrunner.gnm1.ann1.ZJEP1E Arachis hypogaea HOM05D000963 ORTHO05D011791 2.6e-20 102.1 49 98.0
Sopen01g026990 Solanum pennellii HOM05D000963 ORTHO05D005131 4.4e-20 101.3 58 84.5
arahy.Tifrunner.gnm1.ann1.MJQ8WH Arachis hypogaea HOM05D000963 ORTHO05D011117 2.2e-19 99.0 53 88.7
Gorai.002G152100 Gossypium raimondii HOM05D000963 ORTHO05D005131 2.8e-19 98.6 59 84.7
Gohir.D01G121360 Gossypium hirsutum HOM05D000963 ORTHO05D005131 1.4e-18 96.3 59 83.1
CSS0000719 Camellia sinensis var. sinensis HOM05D000963 ORTHO05D005131 3.1e-18 95.1 54 81.5
BraSC59t46558Z Brassica rapa HOM05D000963 ORTHO05D005131 4.2e-15 84.7 57 73.7
SabraMtG0005800 Salix brachista HOM05D000963 ORTHO05D011791 1.2e-14 83.2 53 77.4
C09p39380 Brassica napus HOM05D000963 ORTHO05D005131 6.1e-14 80.9 53 75.5
SHI36889 Sapria himalayana HOM05D000963 ORTHO05D005131 9.8e-12 73.6 40 92.5
TPR.G8529 Trifolium pratense HOM05D000060 ORTHO05D000082 1.7e-11 72.8 44 84.1
Gorai.008G144300 Gossypium raimondii HOM05D000963 ORTHO05D005131 1.6e-09 66.2 49 67.3
Nitab4.5_0004841g0030 Nicotiana tabacum HOM05D000963 ORTHO05D005131 7.7e-09 63.9 31 93.5
Potri.002G073450 Populus trichocarpa HOM05D000963 ORTHO05D005131 5.0e-08 61.2 54 57.4
Gohir.D07G041825 Gossypium hirsutum HOM05D000963 ORTHO05D005131 1.1e-07 60.1 43 62.8
Gorai.001G044400 Gossypium raimondii HOM05D000963 ORTHO05D005131 1.1e-07 60.1 43 62.8
Gohir.A12G129550 Gossypium hirsutum HOM05D000963 ORTHO05D005131 3.2e-07 58.5 37 73.0
Medtr4g076920 Medicago truncatula HOM05D008922 ORTHO05D010978 9.4e-07 57.0 50 62.0
Sopen01g027140 Solanum pennellii HOM05D000963 ORTHO05D011117 6.1e-06 54.3 27 96.3


User provided reference genes

Program Settings