Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0026843 Sechium edule HOM05D007448 ORTHO05D009392 8.5e-35 149.8 78 100.0
ClCG11G018440 Citrullus lanatus HOM05D007448 ORTHO05D009392 2.7e-28 128.3 78 84.6
CsaV3_3G044380 Cucumis sativus L. HOM05D007448 ORTHO05D009392 1.7e-27 125.6 78 83.3
MELO3C018199.2 Cucumis melo HOM05D003028 ORTHO05D003465 2.4e-21 105.1 61 88.5
Atru.chr4.846 Acer truncatum HOM05D007448 ORTHO05D009392 1.6e-20 102.4 78 66.7
Hma1.2p1_1003F.1_g246780 Hydrangea macrophylla HOM05D007448 ORTHO05D009392 1.6e-20 102.4 69 78.3
Hma1.2p1_1488F.1_g286625 Hydrangea macrophylla HOM05D007448 ORTHO05D009392 1.6e-20 102.4 69 78.3
Cpa.g.sc80.111 Carica papaya HOM05D007448 ORTHO05D009392 2.0e-20 102.1 78 67.9
Gohir.A13G143800 Gossypium hirsutum HOM05D007448 ORTHO05D009392 1.3e-19 99.4 78 67.9
MD03G1219500 Malus domestica HOM05D007448 ORTHO05D009392 1.3e-19 99.4 70 71.4
Gohir.D13G148600 Gossypium hirsutum HOM05D007448 ORTHO05D009392 1.7e-19 99.0 70 72.9
Gorai.013G166400 Gossypium raimondii HOM05D007448 ORTHO05D009392 3.8e-19 97.8 70 72.9
Duzib213G0053 Durio zibethinus HOM05D007448 ORTHO05D009392 5.0e-19 97.4 78 69.2
Nn1g03921 Nelumbo nucifera HOM05D007448 ORTHO05D009392 5.0e-19 97.4 77 67.5
Thecc.07G071800 Theobroma cacao HOM05D007448 ORTHO05D009392 5.0e-19 97.4 78 66.7
Prupe.4G189600 Prunus persica HOM05D007448 ORTHO05D009392 8.6e-19 96.7 78 66.7
Cfa020508 Carpinus fangiana HOM05D007448 ORTHO05D009392 1.5e-18 95.9 77 64.9
GSVIVG01014426001 Vitis vinifera HOM05D007448 ORTHO05D009392 1.5e-18 95.9 78 66.7
CiPaw.11G176100 Carya illinoinensis HOM05D007448 ORTHO05D009392 3.3e-18 94.7 78 64.1
Sabra16G0269700 Salix brachista HOM05D007448 ORTHO05D009392 3.3e-18 94.7 68 69.1
Potri.001G406200 Populus trichocarpa HOM05D007448 ORTHO05D009392 4.2e-18 94.4 66 72.7
Lsat_1_v5_gn_5_6900 Lactuca sativa HOM05D007448 ORTHO05D009392 9.5e-18 93.2 78 62.8
PGR083G2019 Punica granatum HOM05D007448 ORTHO05D009392 1.2e-17 92.8 78 62.8
AUR62015605 Chenopodium quinoa HOM05D007448 ORTHO05D009392 1.6e-17 92.4 74 62.2
FvH4_3g20900 Fragaria vesca HOM05D007448 ORTHO05D009392 2.1e-17 92.0 72 69.4
RcHm_v2.0_Chr5g0035321 Rosa chinensis HOM05D007448 ORTHO05D009392 2.1e-17 92.0 72 68.1
FAN21G3287 Fragaria x ananassa HOM05D007448 ORTHO05D009392 2.8e-17 91.7 72 69.4
HanXRQChr08g0234641 Helianthus annuus HOM05D007448 ORTHO05D009392 2.8e-17 91.7 78 61.5
Gorai.007G085800 Gossypium raimondii HOM05D007448 ORTHO05D009392 3.6e-17 91.3 78 61.5
Sc03g0009610 Simmondsia chinensis HOM05D007448 ORTHO05D009392 3.6e-17 91.3 77 62.3
Eucgr.F01082 Eucalyptus grandis HOM05D007448 ORTHO05D009392 4.7e-17 90.9 78 59.0
Manes.03G111700 Manihot esculenta HOM05D007448 ORTHO05D009392 4.7e-17 90.9 78 62.8
Nitab4.5_0000639g0040 Nicotiana tabacum HOM05D007448 ORTHO05D009392 4.7e-17 90.9 68 70.6
FAN25G3793 Fragaria x ananassa HOM05D007448 ORTHO05D009392 6.1e-17 90.5 72 68.1
Migut.M00875 Erythranthe guttata HOM05D007448 ORTHO05D009392 1.4e-16 89.4 66 72.7
TWI39G0054 Tripterygium wilfordii HOM05D007448 ORTHO05D009392 3.0e-16 88.2 78 62.8
CDE02G3786 Ceratophyllum demersum HOM05D007448 ORTHO05D009392 4.0e-16 87.8 66 69.7
DCAR_021403 Daucus carota HOM05D007448 ORTHO05D009392 6.8e-16 87.0 68 66.2
Nitab4.5_0008360g0010 Nicotiana tabacum HOM05D007448 ORTHO05D009392 1.2e-15 86.3 68 67.6
BcaB06g26831 Brassica carinata HOM05D007448 ORTHO05D009392 2.6e-15 85.1 66 65.2
Oeu019361.1 Olea europaea HOM05D007448 ORTHO05D009392 2.6e-15 85.1 63 69.8
Ciclev10010083m.g Citrus clementina HOM05D007448 ORTHO05D009392 5.7e-15 84.0 66 68.2
MELO3C030681.2 Cucumis melo HOM05D007448 ORTHO05D009392 5.7e-15 84.0 48 83.3
Sopen12g006840 Solanum pennellii HOM05D007448 ORTHO05D009392 5.7e-15 84.0 64 70.3
unitig_899.g15312 Utricularia gibba HOM05D007448 ORTHO05D009392 7.5e-15 83.6 68 64.7
A07p06520 Brassica napus HOM05D007448 ORTHO05D009392 9.8e-15 83.2 66 63.6
BraA07t28447Z Brassica rapa HOM05D007448 ORTHO05D009392 9.8e-15 83.2 66 63.6
Thhalv10021866m.g Eutrema salsugineum HOM05D007448 ORTHO05D009392 9.8e-15 83.2 66 63.6
Solyc12g013500.2 Solanum lycopersicum HOM05D007448 ORTHO05D009392 9.8e-15 83.2 64 68.8
Ciclev10010683m.g Citrus clementina HOM05D007448 ORTHO05D009392 1.3e-14 82.8 66 66.7
Peaxi162Scf00000g00504 Petunia axillaris HOM05D007448 ORTHO05D009392 1.3e-14 82.8 77 61.0
Sp3g23710 Schrenkiella parvula HOM05D007448 ORTHO05D009392 1.3e-14 82.8 66 63.6
THA.LOC104822630 Tarenaya hassleriana HOM05D007448 ORTHO05D009392 1.3e-14 82.8 66 66.7
arahy.Tifrunner.gnm1.ann1.UX5IA9 Arachis hypogaea HOM05D007448 ORTHO05D009392 1.7e-14 82.4 60 70.0
BcaC06g35910 Brassica carinata HOM05D007448 ORTHO05D009392 2.2e-14 82.0 66 63.6
BolC7t41418H Brassica oleracea HOM05D007448 ORTHO05D009392 2.2e-14 82.0 66 63.6
Glyma.06G253900 Glycine max HOM05D007448 ORTHO05D009392 2.2e-14 82.0 65 64.6
PGSC0003DMG400008573 Solanum tuberosum HOM05D007448 ORTHO05D009392 2.2e-14 82.0 64 68.8
ECA246G0067 Erigeron canadensis HOM05D007448 ORTHO05D009392 2.9e-14 81.6 72 65.3
CDE05G1526 Ceratophyllum demersum HOM05D007448 ORTHO05D009392 3.7e-14 81.3 66 66.7
Cc06_g05250 Coffea canephora HOM05D007448 ORTHO05D009392 3.7e-14 81.3 86 57.0
Phvul.011G154800 Phaseolus vulgaris HOM05D007448 ORTHO05D009392 3.7e-14 81.3 65 66.2
Gohir.A11G075500 Gossypium hirsutum HOM05D007448 ORTHO05D009392 4.9e-14 80.9 70 64.3
arahy.Tifrunner.gnm1.ann1.GZ4R1Y Arachis hypogaea HOM05D007448 ORTHO05D009392 6.3e-14 80.5 60 66.7
AL3G25660 Arabidopsis lyrata HOM05D007448 ORTHO05D009392 1.4e-13 79.3 68 60.3
Carub.0003s1319 Capsella rubella HOM05D007448 ORTHO05D009392 1.8e-13 79.0 66 62.1
vmacro09556 Vaccinium macrocarpon HOM05D007448 ORTHO05D009392 1.8e-13 79.0 55 72.7
Aa31LG8G850 Aethionema arabicum HOM05D007448 ORTHO05D009392 5.4e-13 77.4 66 62.1
Actinidia18748 Actinidia chinensis HOM05D007448 ORTHO05D009392 7.0e-13 77.0 55 72.7
AT3G13677 Arabidopsis thaliana HOM05D007448 ORTHO05D009392 7.0e-13 77.0 66 60.6
CANSAT11G1525 Cannabis sativa HOM05D007448 ORTHO05D009392 7.0e-13 77.0 78 57.7
Lj3g0013278 Lotus japonicus HOM05D007448 ORTHO05D009392 7.0e-13 77.0 72 61.1
Rhsim04G0017500 Rhododendron simsii HOM05D007448 ORTHO05D009392 7.0e-13 77.0 55 72.7
Medtr7g057740 Medicago truncatula HOM05D007448 ORTHO05D009392 2.0e-12 75.5 54 68.5
Psat3g145520 Pisum sativum HOM05D007448 ORTHO05D009392 2.0e-12 75.5 60 66.7
TPR.G23252 Trifolium pratense HOM05D007448 ORTHO05D009392 4.6e-12 74.3 60 65.0
QL08p018291 Quercus lobata HOM05D007448 ORTHO05D009392 5.9e-12 73.9 68 55.9
PSO421G0428 Papaver somniferum HOM05D007448 ORTHO05D009392 1.0e-11 73.2 55 69.1
EL10Ac4g09050 Beta vulgaris HOM05D007448 ORTHO05D009392 5.0e-11 70.9 57 61.4
AUR62035371 Chenopodium quinoa HOM05D007448 ORTHO05D009392 6.6e-11 70.5 64 54.7
AUR62035373 Chenopodium quinoa HOM05D007448 ORTHO05D009392 6.6e-11 70.5 64 54.7
Oeu006763.2 Olea europaea HOM05D007448 ORTHO05D009392 1.1e-10 69.7 50 70.0
Os03g0581650 Oryza sativa ssp. japonica HOM05D007448 ORTHO05D009392 1.9e-10 68.9 55 65.5
CSS0027029 Camellia sinensis var. sinensis HOM05D007448 ORTHO05D009392 3.3e-10 68.2 58 62.1
Aqoxy4G01379 Aquilegia oxysepala HOM05D007448 ORTHO05D009392 4.3e-10 67.8 71 57.7
AUR62029317 Chenopodium quinoa HOM05D007448 ORTHO05D009392 5.6e-10 67.4 55 58.2
Zm00001eb049080 Zea mays HOM05D007448 ORTHO05D009392 9.5e-10 66.6 69 55.1
Ah.06g183620 Amaranthus hybridus HOM05D007448 ORTHO05D009392 1.2e-09 66.2 58 58.6
SalBow8G2366 Salvia bowleyana HOM05D007448 ORTHO05D009392 6.2e-09 63.9 52 59.6
TAR626G0388 Trochodendron aralioides HOM05D007448 ORTHO05D009392 6.2e-09 63.9 58 55.2
Hund02207 Selenicereus undatus HOM05D007448 ORTHO05D009392 8.0e-09 63.5 56 57.1
FAN11G2341 Fragaria x ananassa HOM05D007448 ORTHO05D009392 1.0e-08 63.2 53 62.3
Lalb_Chr03g0030401 Lupinus albus HOM05D007448 ORTHO05D009392 1.0e-08 63.2 76 47.4
C07p09790 Brassica napus HOM05D004899 ORTHO05D006580 4.0e-08 61.2 55 52.7
MSTRG.14378 Avicennia marina HOM05D007448 ORTHO05D009392 3.4e-07 58.2 47 59.6
CAN.G1320.10 Capsicum annuum HOM05D007448 ORTHO05D009392 7.5e-07 57.0 46 65.2
Atru.chr2.2826 Acer truncatum HOM05D007448 ORTHO05D009392 2.2e-06 55.5 64 54.7
Glyma.12G147500 Glycine max HOM05D007448 ORTHO05D009392 2.9e-06 55.1 55 52.7
Mapoly0162s0010 Marchantia polymorpha HOM05D007448 ORTHO05D009392 4.9e-06 54.3 57 54.4
Haze_09525 Corylus avellana HOM05D008666 ORTHO05D009871 6.4e-06 53.9 49 53.1
Pp3c7_12690 Physcomitrium patens HOM05D007448 ORTHO05D009392 6.4e-06 53.9 60 48.3


User provided reference genes

Program Settings