Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0026816 Sechium edule HOM05D004734 ORTHO05D006019 0.0e+00 1476.5 761 100.0
ClCG02G018160 Citrullus lanatus HOM05D004734 ORTHO05D006019 0.0e+00 1262.3 761 86.1
MELO3C019721.2 Cucumis melo HOM05D004734 ORTHO05D006019 0.0e+00 1258.0 776 84.0
Cfa014305 Carpinus fangiana HOM05D004734 ORTHO05D006019 7.2e-280 967.2 766 66.2
CsaV3_6G015550 Cucumis sativus L. HOM05D004734 ORTHO05D006019 4.1e-275 951.4 572 85.7
Ciclev10014379m.g Citrus clementina HOM05D004734 ORTHO05D006019 6.6e-273 944.1 759 65.2
CiPaw.04G108800 Carya illinoinensis HOM05D004734 ORTHO05D006019 3.6e-271 938.3 763 63.8
Atru.chr6.3288 Acer truncatum HOM05D004734 ORTHO05D006019 4.0e-270 934.9 762 64.6
FAN14G4409 Fragaria x ananassa HOM05D004734 ORTHO05D006019 4.0e-270 934.9 756 64.7
CANSAT64G0097 Cannabis sativa HOM05D004734 ORTHO05D006019 2.2e-268 929.1 763 63.6
Duzib138G1622 Durio zibethinus HOM05D004734 ORTHO05D006019 1.1e-267 926.8 776 62.5
RcHm_v2.0_Chr2g0157781 Rosa chinensis HOM05D004734 ORTHO05D006019 1.9e-267 926.0 760 63.9
FAN09G1456 Fragaria x ananassa HOM05D004734 ORTHO05D006019 1.6e-266 922.9 776 62.8
Gohir.D07G174400 Gossypium hirsutum HOM05D004734 ORTHO05D006019 2.7e-266 922.2 760 62.0
Manes.12G058300 Manihot esculenta HOM05D004734 ORTHO05D006019 7.8e-266 920.6 759 63.2
Haze_12752 Corylus avellana HOM05D004734 ORTHO05D006019 3.0e-265 918.7 746 65.0
MD17G1107900 Malus domestica HOM05D004734 ORTHO05D006019 1.1e-264 916.8 759 63.2
Potri.002G223600 Populus trichocarpa HOM05D004734 ORTHO05D006019 1.1e-264 916.8 759 62.6
MD09G1116200 Malus domestica HOM05D004734 ORTHO05D006019 3.3e-264 915.2 757 63.4
FAN02G4553 Fragaria x ananassa HOM05D004734 ORTHO05D006019 1.2e-263 913.3 756 63.4
Glyma.02G266800 Glycine max HOM05D004734 ORTHO05D006019 3.1e-262 908.7 760 62.2
Prupe.3G208500 Prunus persica HOM05D004734 ORTHO05D006019 1.2e-261 906.7 756 63.1
Glyma.14G050700 Glycine max HOM05D004734 ORTHO05D006019 4.4e-261 904.8 760 62.2
FAN05G4875 Fragaria x ananassa HOM05D004734 ORTHO05D006019 2.2e-260 902.5 768 62.4
Dinv08709 Davidia involucrata HOM05D004734 ORTHO05D006019 2.7e-258 895.6 768 61.2
TWI75G1245 Tripterygium wilfordii HOM05D004734 ORTHO05D006019 4.6e-258 894.8 761 62.2
Phvul.008G215200 Phaseolus vulgaris HOM05D004734 ORTHO05D006019 5.6e-256 887.9 760 61.4
Gorai.001G195000 Gossypium raimondii HOM05D004734 ORTHO05D006019 7.3e-256 887.5 760 60.1
Hma1.2p1_2840F.1_g329320 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 5.8e-253 877.9 765 60.3
TAR629G0221 Trochodendron aralioides HOM05D004734 ORTHO05D006019 1.9e-251 872.8 762 59.3
Lalb_Chr10g0105531 Lupinus albus HOM05D004734 ORTHO05D006019 6.0e-250 867.8 762 60.5
CSS0018671 Camellia sinensis var. sinensis HOM05D004734 ORTHO05D006019 8.6e-249 864.0 763 59.2
QL01p037797 Quercus lobata HOM05D004734 ORTHO05D006019 1.1e-248 863.6 714 63.3
PGR042G3679 Punica granatum HOM05D004734 ORTHO05D006019 1.9e-248 862.8 762 58.7
Eucgr.A01088 Eucalyptus grandis HOM05D004734 ORTHO05D006019 1.6e-247 859.8 762 58.7
Atru.chr6.3273 Acer truncatum HOM05D004734 ORTHO05D006019 1.4e-246 856.7 717 62.9
GSVIVG01030526001 Vitis vinifera HOM05D004734 ORTHO05D006019 2.1e-242 842.8 759 60.1
CARHR126840 Cardamine hirsuta HOM05D004734 ORTHO05D006019 6.0e-242 841.3 765 58.7
AL4G28410 Arabidopsis lyrata HOM05D004734 ORTHO05D006019 6.6e-241 837.8 765 57.8
Thhalv10016293m.g Eutrema salsugineum HOM05D004734 ORTHO05D006019 6.6e-241 837.8 765 58.7
BcaB01g03944 Brassica carinata HOM05D004734 ORTHO05D006019 1.1e-240 837.0 760 58.2
Solyc05g043350.4 Solanum lycopersicum HOM05D004734 ORTHO05D006019 1.5e-240 836.6 760 57.2
arahy.Tifrunner.gnm1.ann1.L0FFGY Arachis hypogaea HOM05D004734 ORTHO05D006019 5.6e-240 834.7 766 57.6
VMungo0647G1710 Vigna mungo HOM05D004734 ORTHO05D006019 7.3e-240 834.3 734 60.4
AT2G32900 Arabidopsis thaliana HOM05D004734 ORTHO05D006019 1.6e-239 833.2 757 58.0
THA.LOC104826129 Tarenaya hassleriana HOM05D004734 ORTHO05D006019 1.6e-239 833.2 761 58.3
BcaC01g05869 Brassica carinata HOM05D004734 ORTHO05D006019 4.7e-239 831.6 763 58.2
Cc00_g21460 Coffea canephora HOM05D004734 ORTHO05D006019 1.4e-238 830.1 763 57.3
Actinidia09755 Actinidia chinensis HOM05D004734 ORTHO05D006019 1.2e-237 827.0 736 58.7
Carub.0004s1431 Capsella rubella HOM05D004734 ORTHO05D006019 2.0e-237 826.2 763 57.5
vmacro12148 Vaccinium macrocarpon HOM05D004734 ORTHO05D006019 2.0e-237 826.2 805 56.0
Nn1g07321 Nelumbo nucifera HOM05D004734 ORTHO05D006019 2.6e-237 825.9 759 56.8
BraA03t11112Z Brassica rapa HOM05D004734 ORTHO05D006019 1.3e-236 823.5 782 56.4
Nitab4.5_0009060g0010 Nicotiana tabacum HOM05D004734 ORTHO05D006019 2.2e-236 822.8 762 56.7
Sp4g15270 Schrenkiella parvula HOM05D004734 ORTHO05D006019 2.9e-236 822.4 760 57.6
arahy.Tifrunner.gnm1.ann1.LYY30L Arachis hypogaea HOM05D004734 ORTHO05D006019 3.8e-236 822.0 784 56.4
Nitab4.5_0000006g0360 Nicotiana tabacum HOM05D004734 ORTHO05D006019 4.9e-236 821.6 770 56.4
BolC3t14542H Brassica oleracea HOM05D004734 ORTHO05D006019 1.4e-235 820.1 786 56.6
BcaB02g10504 Brassica carinata HOM05D004734 ORTHO05D006019 3.5e-234 815.5 760 56.8
DCAR_012916 Daucus carota HOM05D004734 ORTHO05D006019 1.3e-233 813.5 762 57.3
Aa31LG5G4570 Aethionema arabicum HOM05D004734 ORTHO05D006019 8.7e-233 810.8 757 56.5
CAN.G387.3 Capsicum annuum HOM05D004734 ORTHO05D006019 2.5e-232 809.3 761 55.5
Sc21g0001080 Simmondsia chinensis HOM05D004734 ORTHO05D006019 6.2e-231 804.7 763 56.1
BolC4t23215H Brassica oleracea HOM05D004734 ORTHO05D006019 2.9e-228 795.8 778 55.1
TPR.G25656 Trifolium pratense HOM05D004734 ORTHO05D006019 4.9e-228 795.0 685 61.9
BraA05t20212Z Brassica rapa HOM05D004734 ORTHO05D006019 1.1e-227 793.9 778 55.0
A05p12730 Brassica napus HOM05D004734 ORTHO05D006019 1.4e-227 793.5 769 55.3
Migut.A01159 Erythranthe guttata HOM05D004734 ORTHO05D006019 2.4e-227 792.7 763 54.3
Aqoxy2G03788 Aquilegia oxysepala HOM05D004734 ORTHO05D006019 1.6e-226 790.0 771 54.9
HanXRQChr16g0508221 Helianthus annuus HOM05D004734 ORTHO05D006019 7.4e-224 781.2 766 56.0
Oeu054514.1 Olea europaea HOM05D004734 ORTHO05D006019 7.4e-224 781.2 764 55.1
SalBow7G0507 Salvia bowleyana HOM05D004734 ORTHO05D006019 1.3e-223 780.4 762 53.8
C04p16650 Brassica napus HOM05D004734 ORTHO05D006019 1.4e-222 776.9 761 55.8
PSO017G2150 Papaver somniferum HOM05D004734 ORTHO05D006019 5.3e-222 775.0 767 52.5
SGA_v2.0_scaffold73G24401 Striga asiatica HOM05D004734 ORTHO05D006019 6.9e-222 774.6 785 52.9
Duzib211G0196 Durio zibethinus HOM05D004734 ORTHO05D006019 6.4e-220 768.1 762 55.9
A03p18530 Brassica napus HOM05D004734 ORTHO05D006019 7.9e-218 761.1 728 56.2
HanXRQChr14g0438421 Helianthus annuus HOM05D004734 ORTHO05D006019 1.8e-217 760.0 765 55.6
C03p21580 Brassica napus HOM05D004734 ORTHO05D006019 5.1e-217 758.4 732 56.6
EL10Ac9g22816 Beta vulgaris HOM05D004734 ORTHO05D006019 1.3e-215 753.8 800 50.4
Thecc.01G184100 Theobroma cacao HOM05D004734 ORTHO05D006019 2.0e-213 746.5 575 67.8
Lsat_1_v5_gn_7_94920 Lactuca sativa HOM05D004734 ORTHO05D006019 4.9e-212 741.9 746 54.4
AUR62017577 Chenopodium quinoa HOM05D004734 ORTHO05D006019 3.0e-209 732.6 761 51.8
Gohir.A07G168100 Gossypium hirsutum HOM05D004734 ORTHO05D006019 1.6e-207 726.9 575 64.5
Ah.01g001840 Amaranthus hybridus HOM05D004734 ORTHO05D006019 2.9e-204 716.1 759 50.5
FvH4_6g41900 Fragaria vesca HOM05D004734 ORTHO05D006019 4.2e-203 712.2 565 66.0
CDE07G0136 Ceratophyllum demersum HOM05D004734 ORTHO05D006019 2.0e-200 703.4 762 49.9
Medtr5g084830 Medicago truncatula HOM05D004734 ORTHO05D006019 1.4e-198 697.2 565 64.6
Lj8A131T30 Lonicera japonica HOM05D004734 ORTHO05D006019 1.8e-198 696.8 737 54.5
Psat2g026760 Pisum sativum HOM05D004734 ORTHO05D006019 1.7e-196 690.3 566 64.8
LjContig00029g0002265 Lotus japonicus HOM05D004734 ORTHO05D006019 3.8e-196 689.1 563 63.9
HPP92_000196 Vanilla planifolia HOM05D004734 ORTHO05D006019 2.5e-195 686.4 761 49.3
Rhsim06G0169400 Rhododendron simsii HOM05D004734 ORTHO05D006019 3.0e-193 679.5 713 53.3
Cpa.g.sc132.37 Carica papaya HOM05D004734 ORTHO05D006019 7.4e-192 674.9 729 52.0
MBI16_g26176_MAGBIO Magnolia biondii HOM05D004734 ORTHO05D006019 2.4e-190 669.8 770 49.7
ECA236G2537 Erigeron canadensis HOM05D004734 ORTHO05D006019 3.5e-189 666.0 616 57.5
TPR.G6822 Trifolium pratense HOM05D004734 ORTHO05D006019 1.0e-188 664.5 580 60.0
Sopen05g026560 Solanum pennellii HOM05D004734 ORTHO05D006019 1.4e-187 660.6 574 60.3
PSO675G0915 Papaver somniferum HOM05D004734 ORTHO05D006019 1.0e-185 654.4 656 52.1
ATR1128G058 Amborella trichopoda HOM05D004734 ORTHO05D006019 2.8e-183 646.4 747 48.3
AUR62015114 Chenopodium quinoa HOM05D004734 ORTHO05D006019 3.5e-181 639.4 757 47.7
Dinv39761 Davidia involucrata HOM05D004734 ORTHO05D006019 2.2e-180 636.7 514 64.2
PGSC0003DMG400019206 Solanum tuberosum HOM05D004734 ORTHO05D006019 9.1e-174 614.8 530 61.1
Hma1.2p1_0445F.1_g154190 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 1.3e-167 594.3 456 66.7
Hma1.2p1_2840F.1_g329330 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 4.8e-167 592.4 529 60.5
Hund08442 Selenicereus undatus HOM05D004734 ORTHO05D006019 1.8e-161 573.9 758 44.2
Sabra02G0171200 Salix brachista HOM05D004734 ORTHO05D006019 1.4e-150 537.7 505 55.4
HPP92_000240 Vanilla planifolia HOM05D004734 ORTHO05D006019 3.0e-148 530.0 525 53.3
Zm00001eb114880 Zea mays HOM05D004734 ORTHO05D006019 1.2e-144 518.1 624 46.8
SEGI_13952 Sequoiadendron giganteum HOM05D004734 ORTHO05D006019 1.3e-143 514.6 780 38.2
SHI10094 Sapria himalayana HOM05D004734 ORTHO05D006019 3.6e-122 443.4 441 51.9
Psat1g135920 Pisum sativum HOM05D004734 ORTHO05D006019 5.3e-121 439.5 333 67.9
Ca_06067_v3 Cicer arietinum L. HOM05D004734 ORTHO05D006019 3.9e-116 423.3 491 49.7
COL.COLO4_07254 Corchorus olitorius HOM05D004734 ORTHO05D006019 2.8e-114 417.2 535 47.1
Psat0s1468g0040 Pisum sativum HOM05D004734 ORTHO05D006019 3.2e-110 403.7 326 65.3
Peaxi162Scf00977g00312 Petunia axillaris HOM05D004734 ORTHO05D006019 6.5e-103 379.4 287 67.2
Psat0s1468g0080 Pisum sativum HOM05D004734 ORTHO05D006019 3.5e-101 373.6 285 67.4
Mapoly0004s0108 Marchantia polymorpha HOM05D004734 ORTHO05D006019 3.9e-100 370.2 820 30.2
unitig_8.g4607 Utricularia gibba HOM05D004734 ORTHO05D006019 1.4e-97 361.7 385 53.8
Peaxi162Scf00977g00315 Petunia axillaris HOM05D004734 ORTHO05D006019 6.5e-95 352.8 479 45.3
Os11g0545700 Oryza sativa ssp. japonica HOM05D004734 ORTHO05D006019 2.9e-87 327.4 292 59.6
Ca_06064_v3 Cicer arietinum L. HOM05D004734 ORTHO05D000733 1.4e-84 318.5 283 61.5
SMO200G0072 Selaginella moellendorffii HOM05D004734 ORTHO05D006019 1.1e-81 308.9 738 29.5
Psat5g176200 Pisum sativum HOM05D004734 ORTHO05D006019 3.1e-81 307.4 230 69.1
Pp3c3_5560 Physcomitrium patens HOM05D004734 ORTHO05D006019 1.9e-78 298.1 772 28.2
unitig_8.g4608 Utricularia gibba HOM05D004734 ORTHO05D006019 1.7e-71 275.0 345 40.0
RcHm_v2.0_Chr1g0340131 Rosa chinensis HOM05D004734 ORTHO05D006019 1.4e-65 255.4 176 71.6
Zm00001eb113720 Zea mays HOM05D004734 ORTHO05D006019 8.3e-58 229.6 204 57.8
CBR_g30206 Chara braunii HOM05D004734 ORTHO05D006019 5.4e-57 226.9 752 26.6
RcHm_v2.0_Chr1g0340141 Rosa chinensis HOM05D004734 ORTHO05D006019 2.5e-54 218.0 204 55.4
Atru.chr12.2374 Acer truncatum HOM05D004734 ORTHO05D006019 4.7e-53 213.8 191 56.5
RcHm_v2.0_Chr0c20g0500271 Rosa chinensis HOM05D004734 ORTHO05D006019 1.7e-42 178.7 245 44.1
SHI10095 Sapria himalayana HOM05D004734 ORTHO05D006019 2.9e-42 177.9 242 45.5
HPP92_028626 Vanilla planifolia HOM05D004734 ORTHO05D006019 2.4e-41 174.9 416 32.9
HPP92_028624 Vanilla planifolia HOM05D004734 ORTHO05D006019 1.6e-40 172.2 416 32.7
TPR.G146 Trifolium pratense HOM05D004734 ORTHO05D006019 8.0e-37 159.8 136 64.7
Medtr5g084823 Medicago truncatula HOM05D004734 ORTHO05D006019 1.4e-36 159.1 192 45.3
RcHm_v2.0_Chr1g0340121 Rosa chinensis HOM05D004734 ORTHO05D006019 9.8e-27 126.3 107 66.4
Ca_06065_v3 Cicer arietinum L. HOM05D004734 ORTHO05D001394 2.3e-23 115.2 81 71.6
Ca_31316_v3 Cicer arietinum L. HOM05D004734 ORTHO05D006019 1.6e-21 109.0 80 71.2
Psat1g136480 Pisum sativum HOM05D002598 ORTHO05D014892 3.1e-20 104.8 88 55.7
HPP92_000155 Vanilla planifolia HOM05D004734 ORTHO05D006019 3.7e-18 97.8 245 31.8
HPP92_028625 Vanilla planifolia HOM05D004734 ORTHO05D006019 1.4e-17 95.9 92 53.3
SMO278G0012 Selaginella moellendorffii HOM05D004734 ORTHO05D006019 1.9e-17 95.5 146 39.0
FvH4_1g12421 Fragaria vesca HOM05D058264 ORTHO05D029456 5.6e-14 84.0 112 42.9
HPP92_028623 Vanilla planifolia HOM05D004734 ORTHO05D006019 3.6e-13 81.3 84 48.8
CBR_g3444 Chara braunii HOM05D000019 ORTHO05D000353 8.9e-12 76.6 87 40.2
Cfa026774 Carpinus fangiana HOM05D004734 ORTHO05D126311 2.9e-10 71.6 250 25.2
MELO3C034510.2 Cucumis melo HOM05D017495 ORTHO05D167753 3.8e-10 71.2 48 66.7
MELO3C027756.2 Cucumis melo HOM05D017495 ORTHO05D168972 4.2e-09 67.8 64 53.1
Nitab4.5_0001356g0190 Nicotiana tabacum HOM05D000224 ORTHO05D001489 5.4e-09 67.4 124 34.7
MELO3C034872.2 Cucumis melo HOM05D017495 ORTHO05D169777 1.2e-08 66.2 46 67.4
arahy.Tifrunner.gnm1.ann1.RUY2TK Arachis hypogaea HOM05D005906 ORTHO05D007359 1.5e-06 59.3 35 85.7
MELO3C030829.2 Cucumis melo HOM05D017495 ORTHO05D000031 3.3e-06 58.2 33 78.8


User provided reference genes

Program Settings