Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0026811 Sechium edule HOM05D016618 ORTHO05D017846 7.3e-127 457.2 229 100.0
Sed0010617 Sechium edule HOM05D016618 ORTHO05D017846 1.4e-37 160.6 135 56.3
Sed0000842 Sechium edule HOM05D000003 ORTHO05D000126 2.0e-36 156.8 144 50.7
Sed0013483 Sechium edule HOM05D000003 ORTHO05D000004 4.3e-18 95.9 136 38.2
ClCG04G005000 Citrullus lanatus HOM05D016618 ORTHO05D017846 2.1e-17 93.6 144 38.2
ClCG05G011730 Citrullus lanatus HOM05D000003 ORTHO05D016240 1.6e-12 77.4 157 33.1
Sed0014489 Sechium edule HOM05D052838 ORTHO05D017846 2.3e-11 73.6 98 39.8
Manes.10G073737 Manihot esculenta HOM05D000003 ORTHO05D000004 3.9e-11 72.8 152 37.5
TWI31G0724 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 6.6e-11 72.0 157 33.1
Atru.chr12.998 Acer truncatum HOM05D000003 ORTHO05D000167 1.1e-10 71.2 168 29.8
Aa31LG8G10880 Aethionema arabicum HOM05D000003 ORTHO05D000004 1.9e-10 70.5 141 34.0
ClCG03G012470 Citrullus lanatus HOM05D016618 ORTHO05D017846 1.9e-10 70.5 108 38.0
ClCG11G006360 Citrullus lanatus HOM05D000003 ORTHO05D016240 1.9e-10 70.5 154 31.2
Haze_01709 Corylus avellana HOM05D004092 ORTHO05D005448 1.3e-09 67.8 202 26.7
Atru.chr13.2346 Acer truncatum HOM05D000003 ORTHO05D000004 1.6e-09 67.4 152 30.3
RcHm_v2.0_Chr7g0236061 Rosa chinensis HOM05D000003 ORTHO05D000004 2.1e-09 67.0 146 33.6
BcaC06g30787 Brassica carinata HOM05D000003 ORTHO05D000004 2.8e-09 66.6 137 32.1
Prupe.3G063400 Prunus persica HOM05D000003 ORTHO05D000167 2.8e-09 66.6 141 30.5
Sed0001376 Sechium edule HOM05D000003 ORTHO05D000167 2.8e-09 66.6 151 29.8
BcaB01g00479 Brassica carinata HOM05D000003 ORTHO05D004851 4.8e-09 65.9 147 32.7
Atru.chr11.167 Acer truncatum HOM05D000003 ORTHO05D000006 6.2e-09 65.5 223 26.5
Atru.chr13.1170 Acer truncatum HOM05D000003 ORTHO05D000167 6.2e-09 65.5 138 31.9
Atru.chr4.1218 Acer truncatum HOM05D000003 ORTHO05D000167 6.2e-09 65.5 149 33.6
PSO339G2736 Papaver somniferum HOM05D003407 ORTHO05D001026 6.2e-09 65.5 148 28.4
CANSAT78G2307 Cannabis sativa HOM05D000003 ORTHO05D000167 8.1e-09 65.1 136 30.9
QL04p064882 Quercus lobata HOM05D000003 ORTHO05D000167 8.1e-09 65.1 141 27.7
QL93p0215_0031 Quercus lobata HOM05D000003 ORTHO05D000167 8.1e-09 65.1 141 27.7
TWI36G1323 Tripterygium wilfordii HOM05D000003 ORTHO05D000167 1.4e-08 64.3 138 26.8
Atru.chr3.1768 Acer truncatum HOM05D000003 ORTHO05D000167 1.8e-08 63.9 146 30.1
ClCG04G003600 Citrullus lanatus HOM05D000003 ORTHO05D000004 1.8e-08 63.9 155 31.0
FAN14G5071 Fragaria x ananassa HOM05D008833 ORTHO05D010662 1.8e-08 63.9 134 32.1
Atru.chr2.2135 Acer truncatum HOM05D000003 ORTHO05D000004 2.4e-08 63.5 136 31.6
Atru.chr2.2490 Acer truncatum HOM05D000003 ORTHO05D000004 2.4e-08 63.5 212 25.9
Haze_13874 Corylus avellana HOM05D016406 ORTHO05D000167 2.4e-08 63.5 138 31.9
Atru.chr1.763 Acer truncatum HOM05D000003 ORTHO05D000004 3.1e-08 63.2 160 28.1
Atru.chr10.544 Acer truncatum HOM05D000003 ORTHO05D000004 3.1e-08 63.2 136 30.9
Atru.chr4.2367 Acer truncatum HOM05D000003 ORTHO05D000167 3.1e-08 63.2 141 29.8
BolC4t22740H Brassica oleracea HOM05D000003 ORTHO05D001498 3.1e-08 63.2 136 29.4
RcHm_v2.0_Chr5g0040041 Rosa chinensis HOM05D000003 ORTHO05D006737 3.1e-08 63.2 141 31.9
Nitab4.5_0002972g0040 Nicotiana tabacum HOM05D012456 ORTHO05D004636 4.0e-08 62.8 145 29.7
QL04p069059 Quercus lobata HOM05D000003 ORTHO05D000167 4.0e-08 62.8 141 27.0
QL10p052676 Quercus lobata HOM05D000003 ORTHO05D000167 4.0e-08 62.8 184 24.5
Haze_23484 Corylus avellana HOM05D062968 ORTHO05D016203 5.3e-08 62.4 144 29.9
Atru.chr10.114 Acer truncatum HOM05D000003 ORTHO05D000167 6.9e-08 62.0 149 32.9
Atru.chr10.97 Acer truncatum HOM05D000003 ORTHO05D000167 6.9e-08 62.0 149 32.9
Atru.chr8.782 Acer truncatum HOM05D000003 ORTHO05D000004 6.9e-08 62.0 145 30.3
CANSAT25G3451 Cannabis sativa HOM05D000003 ORTHO05D000004 6.9e-08 62.0 136 33.8
CANSAT35G0293 Cannabis sativa HOM05D000003 ORTHO05D000004 6.9e-08 62.0 185 25.4
FvH4_3g25361 Fragaria vesca HOM05D000003 ORTHO05D006737 6.9e-08 62.0 134 32.8
Atru.chr2.2033 Acer truncatum HOM05D000003 ORTHO05D000167 9.0e-08 61.6 148 28.4
Atru.chr5.2480 Acer truncatum HOM05D000003 ORTHO05D000167 9.0e-08 61.6 144 31.2
Atru.chr8.816 Acer truncatum HOM05D000003 ORTHO05D000004 9.0e-08 61.6 183 29.0
BcaC02g10407 Brassica carinata HOM05D004976 ORTHO05D004851 9.0e-08 61.6 140 30.7
CANSAT01G2509 Cannabis sativa HOM05D000003 ORTHO05D000004 9.0e-08 61.6 136 28.7
CANSAT21G2622 Cannabis sativa HOM05D000003 ORTHO05D000004 9.0e-08 61.6 135 32.6
Ciclev10027161m.g Citrus clementina HOM05D000003 ORTHO05D000167 9.0e-08 61.6 144 28.5
RcHm_v2.0_Chr1g0314431 Rosa chinensis HOM05D000003 ORTHO05D006737 1.2e-07 61.2 134 32.8
Atru.chr2.108 Acer truncatum HOM05D000003 ORTHO05D000004 1.5e-07 60.8 144 31.9
Atru.chr2.176 Acer truncatum HOM05D000003 ORTHO05D000167 1.5e-07 60.8 139 33.1
QL02p011410 Quercus lobata HOM05D000003 ORTHO05D000004 1.5e-07 60.8 143 29.4
QL03p066006 Quercus lobata HOM05D001020 ORTHO05D014173 1.5e-07 60.8 141 27.0
Atru.chr1.3779 Acer truncatum HOM05D000003 ORTHO05D000167 2.0e-07 60.5 149 32.9
Atru.chr10.8 Acer truncatum HOM05D000003 ORTHO05D000167 2.0e-07 60.5 160 30.6
Atru.chr4.686 Acer truncatum HOM05D000003 ORTHO05D000126 2.0e-07 60.5 144 29.2
Aa31sc222G90 Aethionema arabicum HOM05D000003 ORTHO05D001091 2.0e-07 60.5 139 36.7
Aa31sc502G20 Aethionema arabicum HOM05D000003 ORTHO05D000004 2.0e-07 60.5 135 32.6
CANSAT01G3112 Cannabis sativa HOM05D000003 ORTHO05D000004 2.0e-07 60.5 145 32.4
Aa31sc320G60 Aethionema arabicum HOM05D000003 ORTHO05D000004 2.6e-07 60.1 135 29.6
Atru.chr3.843 Acer truncatum HOM05D000003 ORTHO05D000167 3.4e-07 59.7 137 32.8
CANSAT01G2388 Cannabis sativa HOM05D000003 ORTHO05D000004 3.4e-07 59.7 144 30.6
CANSAT21G2477 Cannabis sativa HOM05D000003 ORTHO05D000004 3.4e-07 59.7 136 33.1
PSO063G0372 Papaver somniferum HOM05D003407 ORTHO05D001026 3.4e-07 59.7 142 30.3
PSO447G0188 Papaver somniferum HOM05D003407 ORTHO05D001026 3.4e-07 59.7 137 28.5
Atru.chr4.1214 Acer truncatum HOM05D000003 ORTHO05D000167 4.4e-07 59.3 153 32.0
Aa31sc52G80 Aethionema arabicum HOM05D000003 ORTHO05D000004 4.4e-07 59.3 138 27.5
Aqoxy1G03378 Aquilegia oxysepala HOM05D000003 ORTHO05D001026 4.4e-07 59.3 138 32.6
CANSAT11G1145 Cannabis sativa HOM05D000003 ORTHO05D000167 4.4e-07 59.3 136 32.4
FvH4_4g18821 Fragaria vesca HOM05D000003 ORTHO05D000006 4.4e-07 59.3 140 32.9
PSO017G5031 Papaver somniferum HOM05D003407 ORTHO05D001026 4.4e-07 59.3 147 28.6
RcHm_v2.0_Chr3g0486981 Rosa chinensis HOM05D000003 ORTHO05D006737 4.4e-07 59.3 134 30.6
Atru.chr10.1536 Acer truncatum HOM05D000003 ORTHO05D000167 5.8e-07 58.9 142 34.5
CANSAT21G0988 Cannabis sativa HOM05D000003 ORTHO05D000004 5.8e-07 58.9 138 29.0
CANSAT78G1893 Cannabis sativa HOM05D000003 ORTHO05D000167 5.8e-07 58.9 135 30.4
FvH4_2g00211 Fragaria vesca HOM05D000003 ORTHO05D006737 5.8e-07 58.9 138 29.0
PSO170G4716 Papaver somniferum HOM05D000003 ORTHO05D001026 5.8e-07 58.9 142 31.0
PSO832G3899 Papaver somniferum HOM05D003407 ORTHO05D001026 5.8e-07 58.9 148 27.7
Atru.chr2.1340 Acer truncatum HOM05D000003 ORTHO05D000167 7.6e-07 58.5 152 25.0
Atru.chr6.2805 Acer truncatum HOM05D001254 ORTHO05D000167 7.6e-07 58.5 134 30.6
Atru.chr7.668 Acer truncatum HOM05D000003 ORTHO05D000004 7.6e-07 58.5 144 31.9
CANSAT80G0814 Cannabis sativa HOM05D000003 ORTHO05D000004 7.6e-07 58.5 141 30.5
Atru.chr1.3159 Acer truncatum HOM05D000003 ORTHO05D000167 9.9e-07 58.2 158 30.4
CANSAT25G3224 Cannabis sativa HOM05D000003 ORTHO05D000167 9.9e-07 58.2 152 30.9
TWI60G0205 Tripterygium wilfordii HOM05D000003 ORTHO05D000167 9.9e-07 58.2 139 32.4
Aa31sc174G40 Aethionema arabicum HOM05D000003 ORTHO05D001498 1.3e-06 57.8 161 27.3
Aa31sc688G40 Aethionema arabicum HOM05D000003 ORTHO05D000004 1.3e-06 57.8 138 27.5
Lj1g0015022 Lotus japonicus HOM05D000003 ORTHO05D000167 1.3e-06 57.8 135 31.9
PSO675G1658 Papaver somniferum HOM05D000003 ORTHO05D000004 1.3e-06 57.8 137 29.9
Atru.chr4.2041 Acer truncatum HOM05D000003 ORTHO05D000167 1.7e-06 57.4 139 28.8
Atru.chr8.96 Acer truncatum HOM05D000003 ORTHO05D000167 1.7e-06 57.4 115 31.3
Atru.chr9.1984 Acer truncatum HOM05D000003 ORTHO05D000167 1.7e-06 57.4 90 32.2
Atru.chr9.1998 Acer truncatum HOM05D000003 ORTHO05D000167 1.7e-06 57.4 90 32.2
CANSAT25G0727 Cannabis sativa HOM05D000003 ORTHO05D000004 1.7e-06 57.4 151 29.1
CANSAT64G2042 Cannabis sativa HOM05D000003 ORTHO05D000167 1.7e-06 57.4 155 27.7
AUR62034027 Chenopodium quinoa HOM05D000003 ORTHO05D000004 1.7e-06 57.4 138 31.9
PSO170G4058 Papaver somniferum HOM05D000003 ORTHO05D001026 1.7e-06 57.4 152 32.2
Atru.chr2.1449 Acer truncatum HOM05D000003 ORTHO05D002259 2.2e-06 57.0 135 31.1
CANSAT11G2485 Cannabis sativa HOM05D000003 ORTHO05D000167 2.2e-06 57.0 136 33.1
CANSAT25G2525 Cannabis sativa HOM05D000003 ORTHO05D000004 2.2e-06 57.0 143 32.2
AUR62002858 Chenopodium quinoa HOM05D000286 ORTHO05D000170 2.2e-06 57.0 136 29.4
PSO170G0848 Papaver somniferum HOM05D003407 ORTHO05D001026 2.2e-06 57.0 137 32.1
PSO675G8019 Papaver somniferum HOM05D003407 ORTHO05D001026 2.2e-06 57.0 137 29.2
QL05p038991 Quercus lobata HOM05D000003 ORTHO05D000167 2.2e-06 57.0 140 27.1
Atru.chr10.857 Acer truncatum HOM05D000003 ORTHO05D000004 2.9e-06 56.6 154 30.5
Atru.chr2.2758 Acer truncatum HOM05D000003 ORTHO05D000167 2.9e-06 56.6 151 33.8
Atru.chr5.2963 Acer truncatum HOM05D000003 ORTHO05D000006 2.9e-06 56.6 117 31.6
BcaC04g22623 Brassica carinata HOM05D001239 ORTHO05D000925 2.9e-06 56.6 131 29.8
CANSAT35G0664 Cannabis sativa HOM05D000003 ORTHO05D000167 2.9e-06 56.6 143 30.1
CANSAT35G0981 Cannabis sativa HOM05D000003 ORTHO05D000167 2.9e-06 56.6 144 27.1
ClCG11G002930 Citrullus lanatus HOM05D016618 ORTHO05D017846 2.9e-06 56.6 92 32.6
PSO675G0069 Papaver somniferum HOM05D000003 ORTHO05D001026 2.9e-06 56.6 142 30.3
RcHm_v2.0_Chr1g0328181 Rosa chinensis HOM05D000003 ORTHO05D000004 2.9e-06 56.6 134 32.8
Aa31sc149G70 Aethionema arabicum HOM05D000003 ORTHO05D000004 3.8e-06 56.2 74 37.8
CANSAT01G3289 Cannabis sativa HOM05D000003 ORTHO05D000004 3.8e-06 56.2 141 28.4
CANSAT64G2141 Cannabis sativa HOM05D000003 ORTHO05D000004 3.8e-06 56.2 135 31.1
CANSAT80G1428 Cannabis sativa HOM05D000003 ORTHO05D000167 3.8e-06 56.2 140 29.3
AUR62036713 Chenopodium quinoa HOM05D000399 ORTHO05D000304 3.8e-06 56.2 153 32.7
CsaV3_1G046720 Cucumis sativus L. HOM05D042265 ORTHO05D016240 3.8e-06 56.2 114 33.3
FvH4_3g05282 Fragaria vesca HOM05D007268 ORTHO05D009152 3.8e-06 56.2 112 38.4
Nitab4.5_0004988g0020 Nicotiana tabacum HOM05D008306 ORTHO05D004636 3.8e-06 56.2 138 29.0
Atru.chr10.298 Acer truncatum HOM05D000003 ORTHO05D000004 4.9e-06 55.8 144 28.5
BolC6t35388H Brassica oleracea HOM05D001239 ORTHO05D000925 4.9e-06 55.8 135 31.1
PSO832G3172 Papaver somniferum HOM05D003407 ORTHO05D001026 4.9e-06 55.8 155 26.5
QL07p038559 Quercus lobata HOM05D000003 ORTHO05D000167 4.9e-06 55.8 142 28.2
RcHm_v2.0_Chr1g0344421 Rosa chinensis HOM05D000003 ORTHO05D006737 4.9e-06 55.8 134 29.1
Atru.chr1.1181 Acer truncatum HOM05D000003 ORTHO05D000167 6.4e-06 55.5 142 33.1
Atru.chr5.1598 Acer truncatum HOM05D000856 ORTHO05D000167 6.4e-06 55.5 162 29.0
Atru.chr6.1733 Acer truncatum HOM05D000003 ORTHO05D000167 6.4e-06 55.5 141 28.4
Atru.chr8.838 Acer truncatum HOM05D000003 ORTHO05D000167 6.4e-06 55.5 135 29.6
Aa31LG11G4970 Aethionema arabicum HOM05D000003 ORTHO05D000004 6.4e-06 55.5 180 22.8
Aa31sc51G20 Aethionema arabicum HOM05D000003 ORTHO05D000004 6.4e-06 55.5 140 29.3
CANSAT56G0342 Cannabis sativa HOM05D000003 ORTHO05D000167 6.4e-06 55.5 135 29.6
ClCG01G013790 Citrullus lanatus HOM05D029821 ORTHO05D000167 6.4e-06 55.5 154 31.2
Duzib264G0111 Durio zibethinus HOM05D000003 ORTHO05D002259 6.4e-06 55.5 89 41.6
Prupe.7G049300 Prunus persica HOM05D000003 ORTHO05D000004 6.4e-06 55.5 139 31.7
QL03p033496 Quercus lobata HOM05D000003 ORTHO05D000004 6.4e-06 55.5 136 30.1
QL93p0138_0008 Quercus lobata HOM05D000003 ORTHO05D000167 6.4e-06 55.5 154 26.6
Atru.chr1.1791 Acer truncatum HOM05D000003 ORTHO05D000167 8.4e-06 55.1 135 29.6
Atru.chr1.2556 Acer truncatum HOM05D000003 ORTHO05D000004 8.4e-06 55.1 135 28.1
Atru.chr1.3957 Acer truncatum HOM05D000003 ORTHO05D000167 8.4e-06 55.1 117 30.8
CANSAT54G0363 Cannabis sativa HOM05D000003 ORTHO05D000004 8.4e-06 55.1 147 27.9
CANSAT78G2022 Cannabis sativa HOM05D000003 ORTHO05D000004 8.4e-06 55.1 148 31.1
FvH4_5g04911 Fragaria vesca HOM05D000003 ORTHO05D006737 8.4e-06 55.1 106 35.8
Os01g0930300 Oryza sativa ssp. japonica HOM05D000003 ORTHO05D000167 8.4e-06 55.1 120 30.8


User provided reference genes

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