Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0026799 Sechium edule HOM05D003874 ORTHO05D004545 3.1e-182 641.7 337 100.0
MELO3C022165.2 Cucumis melo HOM05D003874 ORTHO05D004545 1.6e-138 496.5 343 78.1
ClCG05G024400 Citrullus lanatus HOM05D003874 ORTHO05D004545 4.7e-138 495.0 343 79.3
ClCG08G000760 Citrullus lanatus HOM05D003874 ORTHO05D004545 1.8e-137 493.0 341 79.8
CsaV3_5G039860 Cucumis sativus L. HOM05D003874 ORTHO05D004545 4.8e-135 485.0 343 76.7
MELO3C012083.2 Cucumis melo HOM05D003874 ORTHO05D004545 5.9e-125 451.4 344 73.3
CsaV3_5G032550 Cucumis sativus L. HOM05D003874 ORTHO05D004545 5.2e-121 438.3 344 72.7
Sed0021145 Sechium edule HOM05D003874 ORTHO05D004545 1.5e-120 436.8 398 63.8
Gorai.013G133000 Gossypium raimondii HOM05D003874 ORTHO05D004545 1.3e-71 274.2 365 47.1
Cfa008075 Carpinus fangiana HOM05D003874 ORTHO05D004545 2.2e-71 273.5 356 50.3
CANSAT21G0097 Cannabis sativa HOM05D003874 ORTHO05D004545 1.4e-70 270.8 340 47.6
Gohir.D13G118600 Gossypium hirsutum HOM05D003874 ORTHO05D004545 1.4e-70 270.8 358 47.5
Duzib268G0037 Durio zibethinus HOM05D003874 ORTHO05D004545 7.1e-70 268.5 369 47.7
Dinv37410 Davidia involucrata HOM05D003874 ORTHO05D004545 9.3e-70 268.1 334 48.8
Sabra13G0085100 Salix brachista HOM05D003874 ORTHO05D004545 9.3e-70 268.1 351 48.4
Thecc.08G178800 Theobroma cacao HOM05D003874 ORTHO05D004545 6.0e-69 265.4 365 49.0
Haze_13960 Corylus avellana HOM05D003874 ORTHO05D004545 1.0e-68 264.6 385 46.8
COL.COLO4_25146 Corchorus olitorius HOM05D003874 ORTHO05D004545 1.3e-68 264.2 383 46.7
Dinv22112 Davidia involucrata HOM05D003874 ORTHO05D004545 1.7e-68 263.8 349 47.3
Cpa.g.sc21.87 Carica papaya HOM05D003874 ORTHO05D004545 3.0e-68 263.1 381 47.8
Gohir.A13G115500 Gossypium hirsutum HOM05D003874 ORTHO05D004545 3.0e-68 263.1 359 47.1
Potri.019G071300 Populus trichocarpa HOM05D003874 ORTHO05D004545 3.3e-67 259.6 364 47.3
QL09p001799 Quercus lobata HOM05D003874 ORTHO05D004545 3.3e-67 259.6 356 46.9
RcHm_v2.0_Chr6g0251151 Rosa chinensis HOM05D003874 ORTHO05D004545 3.3e-67 259.6 342 48.8
Manes.02G201800 Manihot esculenta HOM05D003874 ORTHO05D004545 5.6e-67 258.8 347 48.7
MD10G1004400 Malus domestica HOM05D003874 ORTHO05D004545 9.6e-67 258.1 358 49.7
Duzib177G0949 Durio zibethinus HOM05D003874 ORTHO05D004545 4.8e-66 255.8 372 47.0
FAN20G2080 Fragaria x ananassa HOM05D003874 ORTHO05D004545 4.8e-66 255.8 343 48.4
FAN24G1984 Fragaria x ananassa HOM05D003874 ORTHO05D004545 6.2e-66 255.4 343 48.1
Ciclev10020185m.g Citrus clementina HOM05D003874 ORTHO05D004545 1.4e-65 254.2 358 47.5
FvH4_2g00770 Fragaria vesca HOM05D003874 ORTHO05D004545 1.8e-65 253.8 343 47.8
Atru.chr13.2495 Acer truncatum HOM05D003874 ORTHO05D004545 5.3e-65 252.3 345 49.0
Prupe.8G006800 Prunus persica HOM05D003874 ORTHO05D004545 5.3e-65 252.3 340 48.8
Atru.chr13.2507 Acer truncatum HOM05D003874 ORTHO05D004545 1.2e-64 251.1 345 49.0
Potri.013G099200 Populus trichocarpa HOM05D003874 ORTHO05D004545 3.4e-64 249.6 357 48.2
Manes.18G116100 Manihot esculenta HOM05D003874 ORTHO05D004545 4.5e-64 249.2 354 46.6
FAN27G1922 Fragaria x ananassa HOM05D003874 ORTHO05D004545 3.8e-63 246.1 343 47.2
CiPaw.04G009100 Carya illinoinensis HOM05D003874 ORTHO05D004545 7.1e-62 241.9 368 45.7
Rhsim12G0002900 Rhododendron simsii HOM05D003874 ORTHO05D004545 1.2e-61 241.1 367 43.6
TAR628G1590 Trochodendron aralioides HOM05D003874 ORTHO05D004545 2.1e-61 240.4 363 44.9
CiPaw.03G014100 Carya illinoinensis HOM05D003874 ORTHO05D004545 6.0e-61 238.8 367 46.6
TWI18G0284 Tripterygium wilfordii HOM05D003874 ORTHO05D004545 3.0e-60 236.5 362 45.9
CSS0015095 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 1.5e-59 234.2 336 42.0
Sabra19G0083400 Salix brachista HOM05D003637 ORTHO05D004175 1.5e-59 234.2 410 40.2
MD05G1003400 Malus domestica HOM05D003874 ORTHO05D004545 7.4e-59 231.9 365 45.8
CSS0009242 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 2.8e-58 229.9 336 41.4
TWI75G0660 Tripterygium wilfordii HOM05D003874 ORTHO05D004545 1.1e-57 228.0 365 45.2
vmacro00941 Vaccinium macrocarpon HOM05D003874 ORTHO05D004545 5.3e-57 225.7 368 40.5
Cc10_g08580 Coffea canephora HOM05D003874 ORTHO05D004545 6.9e-57 225.3 351 43.3
Actinidia03528 Actinidia chinensis HOM05D003874 ORTHO05D004545 7.6e-56 221.9 393 38.7
Nn5g27385 Nelumbo nucifera HOM05D003874 ORTHO05D004545 7.6e-56 221.9 365 41.9
CSS0025181 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 1.0e-55 221.5 350 40.3
TAR376G0450 Trochodendron aralioides HOM05D003874 ORTHO05D004545 2.9e-55 219.9 361 42.7
Actinidia29373 Actinidia chinensis HOM05D003874 ORTHO05D004545 4.9e-55 219.2 397 39.0
PGR042G0135 Punica granatum HOM05D003874 ORTHO05D004545 2.5e-54 216.9 344 44.2
Eucgr.F02945 Eucalyptus grandis HOM05D003874 ORTHO05D004545 5.1e-52 209.1 407 38.8
Nitab4.5_0000980g0270 Nicotiana tabacum HOM05D003874 ORTHO05D004545 5.1e-52 209.1 333 40.2
Sabra13G0083800 Salix brachista HOM05D003874 ORTHO05D004545 2.5e-51 206.8 309 44.7
Peaxi162Scf00078g00734 Petunia axillaris HOM05D003874 ORTHO05D004545 4.8e-50 202.6 352 39.2
MBI03_g29107_MAGBIO Magnolia biondii HOM05D003874 ORTHO05D004545 1.2e-48 198.0 379 39.3
SGA_v2.0_scaffold118G32614 Striga asiatica HOM05D003874 ORTHO05D004545 3.4e-48 196.4 334 40.7
Lsat_1_v5_gn_9_75521 Lactuca sativa HOM05D003874 ORTHO05D004545 4.5e-48 196.1 337 41.2
Aqoxy6G00117 Aquilegia oxysepala HOM05D003874 ORTHO05D004545 1.0e-47 194.9 337 36.8
DCAR_003510 Daucus carota HOM05D003874 ORTHO05D004545 1.1e-46 191.4 328 40.2
CsaV3_2G033240 Cucumis sativus L. HOM05D003874 ORTHO05D004545 1.9e-46 190.7 361 38.5
ClCG11G008410 Citrullus lanatus HOM05D003874 ORTHO05D004545 4.2e-46 189.5 368 38.0
Hma1.2p1_0016F.1_g010740 Hydrangea macrophylla HOM05D003874 ORTHO05D004545 9.3e-46 188.3 299 43.5
Hma1.2p1_0016F.1_g010745 Hydrangea macrophylla HOM05D003874 ORTHO05D004545 9.3e-46 188.3 299 43.5
Migut.C01383 Erythranthe guttata HOM05D003874 ORTHO05D004545 1.6e-45 187.6 332 38.9
Oeu028635.2 Olea europaea HOM05D003874 ORTHO05D004545 3.5e-45 186.4 353 37.1
SGA_v2.0_scaffold24G10651 Striga asiatica HOM05D003874 ORTHO05D004545 1.0e-44 184.9 334 39.5
Nitab4.5_0000283g0160 Nicotiana tabacum HOM05D003874 ORTHO05D004545 1.8e-44 184.1 336 36.9
SalBow6G4185 Salvia bowleyana HOM05D003874 ORTHO05D004545 4.3e-43 179.5 337 37.1
MSTRG.1601 Avicennia marina HOM05D003874 ORTHO05D004545 5.7e-43 179.1 343 36.7
SalBow7G3598 Salvia bowleyana HOM05D003874 ORTHO05D004545 9.7e-43 178.3 339 38.9
Aa31LG9G4130 Aethionema arabicum HOM05D003874 ORTHO05D004545 1.3e-42 177.9 338 38.2
AT4G13530 Arabidopsis thaliana HOM05D003874 ORTHO05D004545 1.3e-42 177.9 336 37.8
EL10Ac1g01274 Beta vulgaris HOM05D003874 ORTHO05D004545 1.6e-42 177.6 334 39.5
SalBow1G3841 Salvia bowleyana HOM05D003874 ORTHO05D004545 1.6e-42 177.6 336 35.7
MSTRG.24132 Avicennia marina HOM05D003874 ORTHO05D004545 2.2e-42 177.2 337 37.1
Lj7A419T39 Lonicera japonica HOM05D003874 ORTHO05D004545 3.1e-41 173.3 382 36.6
Thhalv10025948m.g Eutrema salsugineum HOM05D003874 ORTHO05D004545 9.0e-41 171.8 327 38.2
Carub.0007s2901 Capsella rubella HOM05D003874 ORTHO05D004545 1.2e-40 171.4 331 39.0
Nitab4.5_0000213g0070 Nicotiana tabacum HOM05D003874 ORTHO05D004545 1.2e-40 171.4 370 36.2
Nitab4.5_0000554g0030 Nicotiana tabacum HOM05D003874 ORTHO05D004545 1.2e-40 171.4 365 35.6
ECA232G3741 Erigeron canadensis HOM05D003874 ORTHO05D004545 1.5e-40 171.0 337 36.2
CDE08G0633 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 2.6e-40 170.2 361 33.5
C06p17230 Brassica napus HOM05D003874 ORTHO05D004545 1.0e-39 168.3 329 37.1
BolC6t36923H Brassica oleracea HOM05D003874 ORTHO05D004545 1.0e-39 168.3 329 37.1
THA.LOC104808737 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 1.0e-39 168.3 347 37.5
AL7G43110 Arabidopsis lyrata HOM05D003874 ORTHO05D004545 1.3e-39 167.9 337 37.7
BcaC08g44301 Brassica carinata HOM05D003874 ORTHO05D004545 2.2e-39 167.2 329 36.8
CDE02G0043 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 3.8e-39 166.4 337 34.7
PSO170G4959 Papaver somniferum HOM05D003874 ORTHO05D004545 5.0e-39 166.0 364 36.5
AUR62038535 Chenopodium quinoa HOM05D003874 ORTHO05D004545 6.5e-39 165.6 328 39.0
AUR62013384 Chenopodium quinoa HOM05D003874 ORTHO05D004545 4.2e-38 162.9 328 38.4
GSVIVG01036285001 Vitis vinifera HOM05D003874 ORTHO05D004545 9.4e-38 161.8 127 63.8
HanXRQChr15g0484691 Helianthus annuus HOM05D003874 ORTHO05D004545 1.2e-37 161.4 326 37.1
PGSC0003DMG400012413 Solanum tuberosum HOM05D003874 ORTHO05D004545 7.9e-37 158.7 336 35.1
Aqoxy5G01942 Aquilegia oxysepala HOM05D003874 ORTHO05D004545 1.0e-36 158.3 345 36.5
PSO017G0683 Papaver somniferum HOM05D003874 ORTHO05D004545 1.8e-36 157.5 364 36.3
Ah.05g170390 Amaranthus hybridus HOM05D003874 ORTHO05D004545 3.0e-36 156.8 334 38.9
THA.LOC104821626 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 3.9e-36 156.4 347 34.6
Solyc07g063050.1 Solanum lycopersicum HOM05D003874 ORTHO05D004545 1.5e-35 154.5 335 35.2
Sopen07g031240 Solanum pennellii HOM05D003874 ORTHO05D004545 4.3e-35 152.9 335 34.9
MSTRG.22473 Avicennia marina HOM05D003874 ORTHO05D004545 5.7e-35 152.5 344 36.6
CARHR219160 Cardamine hirsuta HOM05D003874 ORTHO05D004545 2.2e-34 150.6 336 34.8
Sp7g11130 Schrenkiella parvula HOM05D003874 ORTHO05D004545 2.2e-34 150.6 329 36.2
THA.LOC104813368 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 2.8e-34 150.2 348 35.1
PGSC0003DMG400008421 Solanum tuberosum HOM05D003874 ORTHO05D004545 4.8e-34 149.4 355 34.6
Sc21g0007200 Simmondsia chinensis HOM05D003874 ORTHO05D004545 2.4e-33 147.1 350 35.4
THA.LOC104806752 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 2.4e-33 147.1 387 34.6
Hund16917 Selenicereus undatus HOM05D003874 ORTHO05D004545 9.1e-33 145.2 121 62.0
MELO3C008094.2 Cucumis melo HOM05D003874 ORTHO05D004545 4.5e-32 142.9 319 35.1
DCAR_014068 Daucus carota HOM05D003874 ORTHO05D004545 1.0e-31 141.7 154 49.4
CAN.G761.11 Capsicum annuum HOM05D003874 ORTHO05D004545 1.3e-31 141.4 297 36.4
CAN.G761.10 Capsicum annuum HOM05D003874 ORTHO05D004545 1.7e-31 141.0 297 36.4
A05p16560 Brassica napus HOM05D003874 ORTHO05D004545 3.8e-31 139.8 336 32.4
Thhalv10028826m.g Eutrema salsugineum HOM05D003874 ORTHO05D004545 6.5e-31 139.0 336 33.9
BraA05t20564Z Brassica rapa HOM05D003874 ORTHO05D004545 4.2e-30 136.3 332 32.5
Carub.0006s2864 Capsella rubella HOM05D003874 ORTHO05D004545 5.5e-30 136.0 328 32.9
Sp6g07450 Schrenkiella parvula HOM05D003874 ORTHO05D004545 2.7e-29 133.7 330 35.5
AL6G43860 Arabidopsis lyrata HOM05D003874 ORTHO05D004545 7.9e-29 132.1 276 37.3
AT4G10080 Arabidopsis thaliana HOM05D003874 ORTHO05D004545 1.0e-28 131.7 353 33.7
Aa31LG9G11920 Aethionema arabicum HOM05D003874 ORTHO05D004545 2.3e-28 130.6 368 33.7
BolC2t10292H Brassica oleracea HOM05D003874 ORTHO05D004545 5.1e-28 129.4 113 54.9
Lalb_Chr15g0080071 Lupinus albus HOM05D003874 ORTHO05D004545 1.1e-27 128.3 105 64.8
unitig_37.g13076 Utricularia gibba HOM05D003874 ORTHO05D004545 1.5e-27 127.9 113 53.1
BcaB01g01449 Brassica carinata HOM05D003874 ORTHO05D004545 2.0e-27 127.5 207 40.1
BcaB05g23922 Brassica carinata HOM05D003874 ORTHO05D004545 9.7e-27 125.2 336 34.5
arahy.Tifrunner.gnm1.ann1.GHV9B3 Arachis hypogaea HOM05D003874 ORTHO05D004545 1.7e-26 124.4 108 62.0
arahy.Tifrunner.gnm1.ann1.N113B0 Arachis hypogaea HOM05D003874 ORTHO05D004545 1.7e-26 124.4 108 62.0
BcaC03g16428 Brassica carinata HOM05D003874 ORTHO05D004545 3.7e-26 123.2 150 46.0
C02p42530 Brassica napus HOM05D003874 ORTHO05D004545 3.7e-26 123.2 150 46.0
A02p26740 Brassica napus HOM05D003874 ORTHO05D004545 4.8e-26 122.9 278 33.5
BraA02t07678Z Brassica rapa HOM05D003874 ORTHO05D004545 4.8e-26 122.9 278 33.5
CARHR261100 Cardamine hirsuta HOM05D003874 ORTHO05D004545 6.3e-26 122.5 166 42.8
Lj3g0022236 Lotus japonicus HOM05D003874 ORTHO05D004545 3.1e-25 120.2 111 56.8
MBI06_g14322_MAGBIO Magnolia biondii HOM05D003874 ORTHO05D004545 9.1e-25 118.6 447 29.1
BcaC04g21012 Brassica carinata HOM05D003874 ORTHO05D004545 2.0e-24 117.5 115 49.6
C09p36670 Brassica napus HOM05D003874 ORTHO05D004545 2.0e-24 117.5 115 49.6
BolC9t56498H Brassica oleracea HOM05D003874 ORTHO05D004545 2.0e-24 117.5 115 49.6
Ca_27532_v3 Cicer arietinum L. HOM05D003874 ORTHO05D004545 2.0e-24 117.5 108 62.0
A09p28850 Brassica napus HOM05D003874 ORTHO05D004545 2.6e-24 117.1 153 43.1
BraA09t38447Z Brassica rapa HOM05D003874 ORTHO05D004545 2.6e-24 117.1 153 43.1
Oeu046029.1 Olea europaea HOM05D003874 ORTHO05D004545 2.6e-24 117.1 95 57.9
Psat5g232160 Pisum sativum HOM05D003874 ORTHO05D004545 4.5e-24 116.3 124 54.0
TPR.G25536 Trifolium pratense HOM05D003874 ORTHO05D004545 5.9e-24 115.9 174 45.4
Oeu013912.1 Olea europaea HOM05D003874 ORTHO05D004545 1.7e-23 114.4 450 27.3
Zm00001eb182290 Zea mays HOM05D003874 ORTHO05D004545 4.2e-22 109.8 105 50.5
CDE07G0664 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 9.4e-22 108.6 340 28.2
Phvul.005G002800 Phaseolus vulgaris HOM05D003874 ORTHO05D004545 9.4e-22 108.6 127 49.6
Os02g0558500 Oryza sativa ssp. japonica HOM05D003874 ORTHO05D004545 2.1e-21 107.5 102 46.1
Zm00001eb366050 Zea mays HOM05D003874 ORTHO05D004545 4.7e-21 106.3 172 37.2
CSS0021765 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 6.1e-21 105.9 71 70.4
Glyma.06G323500 Glycine max HOM05D003874 ORTHO05D004545 6.1e-21 105.9 141 50.4
Sopen11g018310 Solanum pennellii HOM05D003874 ORTHO05D004545 6.1e-21 105.9 124 49.2
HPP92_005639 Vanilla planifolia HOM05D000572 ORTHO05D000840 8.0e-21 105.5 334 28.1
VMungo1080G0642 Vigna mungo HOM05D003874 ORTHO05D004545 8.0e-21 105.5 246 36.2
BcaB05g25162 Brassica carinata HOM05D003874 ORTHO05D004545 1.0e-20 105.1 340 29.4
Medtr3g006350 Medicago truncatula HOM05D003874 ORTHO05D004545 1.0e-20 105.1 246 35.8
Glyma.04G111000 Glycine max HOM05D003874 ORTHO05D004545 1.5e-19 101.3 108 52.8
Solyc11g040300.2 Solanum lycopersicum HOM05D003874 ORTHO05D004545 2.8e-18 97.1 71 62.0
HPP92_009210 Vanilla planifolia HOM05D003874 ORTHO05D004545 1.7e-15 87.8 328 30.2
Zm00001eb145550 Zea mays HOM05D003874 ORTHO05D004545 4.2e-14 83.2 168 33.3
SEGI_28614 Sequoiadendron giganteum HOM05D003874 ORTHO05D004545 7.5e-11 72.4 159 32.7
CARHR261120 Cardamine hirsuta HOM05D003874 ORTHO05D004545 1.3e-10 71.6 129 35.7
Sabra16G0296100 Salix brachista HOM05D003874 ORTHO05D004545 1.6e-08 64.7 101 40.6
Nn4g22326 Nelumbo nucifera HOM05D003874 ORTHO05D004545 2.7e-08 63.9 40 70.0
Sabra16G0293600 Salix brachista HOM05D003874 ORTHO05D004545 3.5e-08 63.5 101 39.6
Sabra16G0294500 Salix brachista HOM05D003874 ORTHO05D004545 1.0e-07 62.0 101 37.6
Pp3c15_17300 Physcomitrium patens HOM05D001925 ORTHO05D004257 2.5e-06 57.4 83 37.3
Pp3c9_18340 Physcomitrium patens HOM05D001925 ORTHO05D004257 3.2e-06 57.0 69 40.6


User provided reference genes

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