Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0026776 Sechium edule HOM05D006466 ORTHO05D008084 7.6e-113 410.6 221 100.0
MELO3C005537.2 Cucumis melo HOM05D006466 ORTHO05D008084 3.8e-96 355.1 224 84.8
CsaV3_5G004180 Cucumis sativus L. HOM05D006466 ORTHO05D008084 3.5e-94 348.6 225 83.1
ClCG01G004000 Citrullus lanatus HOM05D006466 ORTHO05D008084 7.9e-94 347.4 224 85.3
Sed0012351 Sechium edule HOM05D006466 ORTHO05D008084 1.1e-90 337.0 225 84.9
Potri.001G123200 Populus trichocarpa HOM05D006466 ORTHO05D008084 1.0e-61 240.7 231 60.6
CiPaw.11G153200 Carya illinoinensis HOM05D006466 ORTHO05D008084 1.4e-61 240.4 222 63.5
Cfa012739 Carpinus fangiana HOM05D006466 ORTHO05D008084 2.3e-61 239.6 231 61.9
Haze_07889 Corylus avellana HOM05D006466 ORTHO05D008084 2.3e-61 239.6 230 62.2
FAN04G2180 Fragaria x ananassa HOM05D006466 ORTHO05D008084 4.0e-61 238.8 234 59.8
Sabra01G0094900 Salix brachista HOM05D006466 ORTHO05D008084 2.6e-60 236.1 229 59.4
TWI81G0148 Tripterygium wilfordii HOM05D006466 ORTHO05D008084 9.7e-60 234.2 235 59.6
FAN13G1623 Fragaria x ananassa HOM05D006466 ORTHO05D008084 1.3e-59 233.8 231 60.6
Eucgr.D02068 Eucalyptus grandis HOM05D006466 ORTHO05D008084 3.7e-59 232.3 224 60.3
FAN18G0606 Fragaria x ananassa HOM05D006466 ORTHO05D008084 8.2e-59 231.1 234 58.5
Thecc.03G253200 Theobroma cacao HOM05D006466 ORTHO05D008084 8.2e-59 231.1 229 59.0
Prupe.5G071300 Prunus persica HOM05D006466 ORTHO05D008084 1.4e-58 230.3 159 80.5
RcHm_v2.0_Chr7g0203001 Rosa chinensis HOM05D006466 ORTHO05D008084 1.4e-58 230.3 239 58.2
FvH4_5g18710 Fragaria vesca HOM05D006466 ORTHO05D008084 3.1e-58 229.2 234 58.5
Gohir.A12G217700 Gossypium hirsutum HOM05D006466 ORTHO05D008084 1.6e-57 226.9 221 59.7
QL12p012545 Quercus lobata HOM05D006466 ORTHO05D008084 1.6e-57 226.9 226 58.4
Ciclev10005762m.g Citrus clementina HOM05D006466 ORTHO05D008084 3.5e-57 225.7 240 56.7
GSVIVG01001313001 Vitis vinifera HOM05D006466 ORTHO05D008084 5.9e-57 224.9 219 58.9
Atru.chr2.1841 Acer truncatum HOM05D006466 ORTHO05D008084 1.0e-56 224.2 219 59.8
PGR031G1557 Punica granatum HOM05D006466 ORTHO05D008084 2.2e-56 223.0 231 59.3
Gorai.008G235900 Gossypium raimondii HOM05D006466 ORTHO05D008084 6.5e-56 221.5 221 58.8
PGSC0003DMG401004755 Solanum tuberosum HOM05D006466 ORTHO05D008084 6.5e-56 221.5 227 56.8
Manes.01G079600 Manihot esculenta HOM05D006466 ORTHO05D008084 1.1e-55 220.7 228 58.3
Gohir.D12G220200 Gossypium hirsutum HOM05D006466 ORTHO05D008084 1.5e-55 220.3 221 58.4
Sopen08g027210 Solanum pennellii HOM05D006466 ORTHO05D008084 1.5e-55 220.3 227 56.4
Solyc08g078740.1 Solanum lycopersicum HOM05D006466 ORTHO05D008084 1.9e-55 219.9 227 56.4
Actinidia27463 Actinidia chinensis HOM05D006466 ORTHO05D008084 4.2e-55 218.8 227 58.1
Hma1.2p1_2380F.1_g320960 Hydrangea macrophylla HOM05D006466 ORTHO05D008084 5.5e-55 218.4 240 55.8
Manes.15G178400 Manihot esculenta HOM05D006466 ORTHO05D008084 2.7e-54 216.1 211 59.2
Dinv39131 Davidia involucrata HOM05D006466 ORTHO05D008084 3.6e-54 215.7 235 56.2
FAN08G0853 Fragaria x ananassa HOM05D006466 ORTHO05D008084 6.1e-54 214.9 234 56.8
Ah.12g056750 Amaranthus hybridus HOM05D006466 ORTHO05D008084 5.2e-53 211.8 238 52.9
Manes.15G178500 Manihot esculenta HOM05D006466 ORTHO05D008084 1.5e-52 210.3 211 58.8
Lsat_1_v5_gn_3_521 Lactuca sativa HOM05D006466 ORTHO05D008084 1.3e-51 207.2 221 57.9
Nitab4.5_0000312g0170 Nicotiana tabacum HOM05D006466 ORTHO05D008084 1.4e-50 203.8 233 51.5
Nitab4.5_0008481g0010 Nicotiana tabacum HOM05D006466 ORTHO05D008084 3.1e-50 202.6 232 51.3
CANSAT21G1921 Cannabis sativa HOM05D006466 ORTHO05D008084 4.1e-50 202.2 245 53.5
MD04G1088600 Malus domestica HOM05D006466 ORTHO05D008084 5.4e-50 201.8 237 52.3
Lj1A353T9 Lonicera japonica HOM05D006466 ORTHO05D008084 2.7e-49 199.5 220 52.7
SHI10480 Sapria himalayana HOM05D006466 ORTHO05D008084 4.5e-49 198.7 214 55.1
CDE02G4728 Ceratophyllum demersum HOM05D006466 ORTHO05D008084 1.0e-48 197.6 219 53.0
Cpa.g.sc29.144 Carica papaya HOM05D006466 ORTHO05D008084 2.2e-48 196.4 222 54.1
TAR375G0032 Trochodendron aralioides HOM05D006466 ORTHO05D008084 1.9e-47 193.4 208 54.8
Lj4g0024258 Lotus japonicus HOM05D006466 ORTHO05D008084 3.2e-47 192.6 224 54.9
Medtr4g101030 Medicago truncatula HOM05D006466 ORTHO05D008084 4.2e-47 192.2 232 53.0
Aa31LG2G12660 Aethionema arabicum HOM05D006466 ORTHO05D008084 1.2e-46 190.7 240 50.8
DCAR_008489 Daucus carota HOM05D005079 ORTHO05D006362 1.2e-46 190.7 240 51.2
PSO170G1975 Papaver somniferum HOM05D006466 ORTHO05D008084 2.1e-46 189.9 213 52.1
Nn1g01036 Nelumbo nucifera HOM05D006466 ORTHO05D008084 3.6e-46 189.1 220 55.0
PSO528G0015 Papaver somniferum HOM05D006466 ORTHO05D008084 4.7e-46 188.7 215 53.5
ECA232G3467 Erigeron canadensis HOM05D006466 ORTHO05D008084 1.0e-45 187.6 241 49.8
Phvul.003G219800 Phaseolus vulgaris HOM05D006466 ORTHO05D008084 4.0e-45 185.7 207 56.5
unitig_61.g26196 Utricularia gibba HOM05D006466 ORTHO05D008084 4.0e-45 185.7 243 50.6
Carub.0007s2494 Capsella rubella HOM05D006466 ORTHO05D008084 6.8e-45 184.9 250 49.6
CARHR222950 Cardamine hirsuta HOM05D006466 ORTHO05D008084 6.8e-45 184.9 257 49.8
MSTRG.12091 Avicennia marina HOM05D006466 ORTHO05D008084 1.2e-44 184.1 244 49.2
BcaNung02868 Brassica carinata HOM05D006466 ORTHO05D008084 2.6e-44 183.0 248 49.2
arahy.Tifrunner.gnm1.ann1.HK6I2L Arachis hypogaea HOM05D006466 ORTHO05D008084 7.5e-44 181.4 230 48.7
SalBow6G4398 Salvia bowleyana HOM05D006466 ORTHO05D008084 9.8e-44 181.0 181 56.9
Nn6g33981 Nelumbo nucifera HOM05D006466 ORTHO05D008084 1.3e-43 180.6 154 66.9
Rhsim07G0108000 Rhododendron simsii HOM05D006466 ORTHO05D008084 1.3e-43 180.6 157 61.8
TPR.G37616 Trifolium pratense HOM05D006466 ORTHO05D008084 1.3e-43 180.6 250 49.2
AL7G38350 Arabidopsis lyrata HOM05D006466 ORTHO05D008084 1.7e-43 180.3 253 48.2
AL7G38400 Arabidopsis lyrata HOM05D006466 ORTHO05D008084 1.7e-43 180.3 253 48.2
arahy.Tifrunner.gnm1.ann1.VT8LY8 Arachis hypogaea HOM05D006466 ORTHO05D008084 1.7e-43 180.3 230 49.1
Cc08_g12600 Coffea canephora HOM05D006466 ORTHO05D008084 1.7e-43 180.3 194 53.6
A03p49940 Brassica napus HOM05D006466 ORTHO05D008084 2.2e-43 179.9 251 48.6
BraA03t14087Z Brassica rapa HOM05D006466 ORTHO05D008084 2.2e-43 179.9 251 48.6
Sp7g15110 Schrenkiella parvula HOM05D006466 ORTHO05D008084 2.2e-43 179.9 252 47.6
BcaC06g33488 Brassica carinata HOM05D006466 ORTHO05D008084 3.7e-43 179.1 251 49.0
C07p47980 Brassica napus HOM05D006466 ORTHO05D008084 3.7e-43 179.1 251 49.0
BolC7t45321H Brassica oleracea HOM05D006466 ORTHO05D008084 3.7e-43 179.1 251 49.0
Thhalv10026056m.g Eutrema salsugineum HOM05D006466 ORTHO05D008084 3.7e-43 179.1 253 50.2
Eucgr.D02058 Eucalyptus grandis HOM05D006466 ORTHO05D008084 3.1e-42 176.0 214 51.4
arahy.Tifrunner.gnm1.ann1.LISY29 Arachis hypogaea HOM05D006466 ORTHO05D008084 4.1e-42 175.6 240 47.5
Lalb_Chr16g0389331 Lupinus albus HOM05D006466 ORTHO05D008084 5.4e-42 175.3 185 58.4
GSVIVG01030884001 Vitis vinifera HOM05D006466 ORTHO05D008084 5.4e-42 175.3 206 50.0
Peaxi162Scf00002g00172 Petunia axillaris HOM05D006466 ORTHO05D008084 7.0e-42 174.9 251 46.6
SGA_v2.0_scaffold120G32877 Striga asiatica HOM05D006466 ORTHO05D008084 1.2e-41 174.1 250 47.6
ATR0193G040 Amborella trichopoda HOM05D006466 ORTHO05D008084 2.0e-41 173.3 149 61.1
Aqoxy6G01886 Aquilegia oxysepala HOM05D006466 ORTHO05D008084 3.5e-41 172.6 236 47.0
Migut.A00968 Erythranthe guttata HOM05D006466 ORTHO05D008084 6.6e-40 168.3 255 46.3
HPP92_014482 Vanilla planifolia HOM05D006466 ORTHO05D008084 6.6e-40 168.3 241 46.9
Psat4g071640 Pisum sativum HOM05D006466 ORTHO05D008084 3.3e-39 166.0 185 53.5
VMungo0251G3296 Vigna mungo HOM05D006466 ORTHO05D008084 7.3e-39 164.9 232 52.6
arahy.Tifrunner.gnm1.ann1.MY6G43 Arachis hypogaea HOM05D006466 ORTHO05D008084 1.6e-38 163.7 228 47.4
AT4G16535 Arabidopsis thaliana HOM05D006466 ORTHO05D008084 2.1e-38 163.3 255 46.3
Oeu019590.1 Olea europaea HOM05D006466 ORTHO05D008084 1.3e-35 154.1 216 49.1
Os10g0507500 Oryza sativa ssp. japonica HOM05D006466 ORTHO05D008084 6.4e-35 151.8 251 44.2
Lj8A452G56 Lonicera japonica HOM05D006466 ORTHO05D008084 8.3e-35 151.4 226 45.1
Ca_21959_v3 Cicer arietinum L. HOM05D006466 ORTHO05D008084 3.2e-34 149.4 175 53.7
AUR62007505 Chenopodium quinoa HOM05D006466 ORTHO05D008084 5.9e-33 145.2 217 44.2
AUR62039958 Chenopodium quinoa HOM05D006466 ORTHO05D008084 7.8e-33 144.8 208 46.6
SEGI_30297 Sequoiadendron giganteum HOM05D006466 ORTHO05D008084 6.6e-32 141.7 237 41.4
CDE11G0010 Ceratophyllum demersum HOM05D006466 ORTHO05D008084 1.1e-31 141.0 182 50.5
AagrBONN_evm.TU.Sc2ySwM_228.639 Anthoceros agrestis HOM05D007188 ORTHO05D009102 2.8e-30 136.3 222 41.4
Glyma.17G140900 Glycine max HOM05D006466 ORTHO05D008084 2.8e-30 136.3 236 44.1
arahy.Tifrunner.gnm1.ann1.Y2DLV0 Arachis hypogaea HOM05D006466 ORTHO05D008084 7.8e-25 118.2 109 57.8
Mapoly0015s0012 Marchantia polymorpha HOM05D006466 ORTHO05D008084 1.1e-21 107.8 262 34.0
arahy.Tifrunner.gnm1.ann1.AC5BZW Arachis hypogaea HOM05D006466 ORTHO05D008084 1.8e-21 107.1 173 44.5
Pp3c3_19850 Physcomitrium patens HOM05D006466 ORTHO05D008084 2.6e-20 103.2 225 36.9
Oeu039628.1 Olea europaea HOM05D006466 ORTHO05D008084 9.2e-18 94.7 54 88.9
arahy.Tifrunner.gnm1.ann1.W2BU8F Arachis hypogaea HOM05D004339 ORTHO05D002389 1.3e-16 90.9 173 42.2
Zm00001eb044010 Zea mays HOM05D006466 ORTHO05D008084 1.3e-16 90.9 71 66.2
Eucgr.L01522 Eucalyptus grandis HOM05D006466 ORTHO05D008084 5.1e-16 89.0 51 86.3
HanXRQChr02g0051581 Helianthus annuus HOM05D006466 ORTHO05D008084 6.2e-14 82.0 100 48.0
Actinidia05202 Actinidia chinensis HOM05D006466 ORTHO05D008084 4.9e-11 72.4 87 48.3
Sc22g0000810 Simmondsia chinensis HOM05D006466 ORTHO05D008084 3.2e-10 69.7 108 41.7
arahy.Tifrunner.gnm1.ann1.X9JZY0 Arachis hypogaea HOM05D004687 ORTHO05D006002 3.5e-09 66.2 58 56.9
BcaC04g19403 Brassica carinata HOM05D006466 ORTHO05D008084 4.6e-09 65.9 91 45.1
BolC9t58475H Brassica oleracea HOM05D006466 ORTHO05D008084 4.6e-09 65.9 91 45.1
Cre06.g300200 Chlamydomonas reinhardtii HOM05D006466 ORTHO05D008084 3.3e-07 59.7 33 84.8
AT2G03010 Arabidopsis thaliana HOM05D007773 ORTHO05D008084 2.8e-06 56.6 47 68.1
CBR_g29445 Chara braunii HOM05D006466 ORTHO05D008084 3.6e-06 56.2 56 53.6


User provided reference genes

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