Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0026759 Sechium edule HOM05D006019 ORTHO05D007900 9.7e-300 1032.7 527 100.0
ClCG10G005120 Citrullus lanatus HOM05D006019 ORTHO05D007900 4.2e-242 841.3 494 88.1
MELO3C014178.2 Cucumis melo HOM05D006019 ORTHO05D007900 5.3e-237 824.3 494 86.4
CsaV3_3G004800 Cucumis sativus L. HOM05D006019 ORTHO05D007900 6.4e-235 817.4 492 86.2
CSS0042888 Camellia sinensis var. sinensis HOM05D006019 ORTHO05D007900 1.7e-211 739.6 499 75.2
CSS0000535 Camellia sinensis var. sinensis HOM05D006019 ORTHO05D007900 7.1e-210 734.2 499 74.1
Potri.015G065900 Populus trichocarpa HOM05D006019 ORTHO05D007900 1.8e-208 729.6 487 75.4
Eucgr.F03504 Eucalyptus grandis HOM05D006019 ORTHO05D007900 8.7e-208 727.2 491 74.5
GSVIVG01037722001 Vitis vinifera HOM05D006019 ORTHO05D007900 1.1e-207 726.9 480 76.5
QL08p020269 Quercus lobata HOM05D006019 ORTHO05D007900 4.3e-207 724.9 481 76.3
Atru.chr2.3529 Acer truncatum HOM05D006019 ORTHO05D007900 6.3e-206 721.1 475 77.3
Sabra15G0091100 Salix brachista HOM05D006019 ORTHO05D007900 1.4e-205 719.9 486 74.3
Atru.chr2.3549 Acer truncatum HOM05D006019 ORTHO05D007900 1.8e-205 719.5 515 73.0
Actinidia35369 Actinidia chinensis HOM05D006019 ORTHO05D007900 7.7e-204 714.1 474 76.4
TAR629G1914 Trochodendron aralioides HOM05D006019 ORTHO05D007900 1.3e-203 713.4 460 76.1
Manes.03G136600 Manihot esculenta HOM05D006019 ORTHO05D007900 1.4e-202 709.9 482 73.4
CiPaw.11G172700 Carya illinoinensis HOM05D006019 ORTHO05D007900 2.5e-202 709.1 498 73.5
Dinv22232 Davidia involucrata HOM05D006019 ORTHO05D007900 1.6e-201 706.4 471 76.4
Prupe.4G223000 Prunus persica HOM05D006019 ORTHO05D007900 2.7e-201 705.7 503 71.6
RcHm_v2.0_Chr5g0041541 Rosa chinensis HOM05D006019 ORTHO05D007900 1.8e-200 703.0 518 69.7
Haze_09462 Corylus avellana HOM05D006019 ORTHO05D007900 5.1e-200 701.4 458 77.3
vmacro09689 Vaccinium macrocarpon HOM05D006019 ORTHO05D007900 8.8e-200 700.7 460 75.9
Thecc.07G028300 Theobroma cacao HOM05D006019 ORTHO05D007900 1.5e-199 699.9 475 74.5
Duzib213G0195 Durio zibethinus HOM05D006019 ORTHO05D007900 5.7e-199 698.0 460 75.9
FAN21G2609 Fragaria x ananassa HOM05D006019 ORTHO05D007900 2.2e-198 696.0 515 69.5
VMungo0647G0128 Vigna mungo HOM05D006019 ORTHO05D007900 6.3e-198 694.5 477 73.0
PGR031G3909 Punica granatum HOM05D006019 ORTHO05D007900 8.2e-198 694.1 478 73.2
Phvul.008G272400 Phaseolus vulgaris HOM05D006019 ORTHO05D007900 4.1e-197 691.8 496 70.0
Cc05_g14300 Coffea canephora HOM05D006019 ORTHO05D007900 1.2e-196 690.3 488 70.3
Gohir.D01G070900 Gossypium hirsutum HOM05D006019 ORTHO05D007900 1.2e-196 690.3 490 71.2
Gorai.002G093600 Gossypium raimondii HOM05D006019 ORTHO05D007900 1.2e-196 690.3 490 71.2
Nn1g07344 Nelumbo nucifera HOM05D006019 ORTHO05D007900 1.2e-196 690.3 460 73.5
Ciclev10007944m.g Citrus clementina HOM05D006019 ORTHO05D007900 2.6e-196 689.1 493 71.2
Gohir.A01G084500 Gossypium hirsutum HOM05D006019 ORTHO05D007900 3.4e-196 688.7 490 71.0
MD11G1209500 Malus domestica HOM05D006019 ORTHO05D007900 4.5e-196 688.3 506 68.8
Lalb_Chr04g0248161 Lupinus albus HOM05D006019 ORTHO05D007900 5.9e-196 688.0 474 73.0
COL.COLO4_09733 Corchorus olitorius HOM05D006019 ORTHO05D007900 1.7e-195 686.4 494 70.4
CANSAT11G1049 Cannabis sativa HOM05D006019 ORTHO05D007900 2.2e-195 686.0 512 68.6
LjContig00272g0018197 Lotus japonicus HOM05D006019 ORTHO05D007900 3.8e-195 685.3 505 69.7
FAN25G1378 Fragaria x ananassa HOM05D006019 ORTHO05D007900 2.5e-194 682.6 495 71.1
Nitab4.5_0000984g0040 Nicotiana tabacum HOM05D006019 ORTHO05D007900 5.5e-194 681.4 487 70.6
Peaxi162Scf00235g00727 Petunia axillaris HOM05D006019 ORTHO05D007900 1.6e-193 679.9 460 72.4
Migut.M01708 Erythranthe guttata HOM05D006019 ORTHO05D007900 2.1e-193 679.5 484 70.5
Glyma.14G018700 Glycine max HOM05D006019 ORTHO05D007900 2.7e-193 679.1 499 69.1
Glyma.02G294900 Glycine max HOM05D006019 ORTHO05D007900 7.9e-193 677.6 477 71.3
Nitab4.5_0002826g0040 Nicotiana tabacum HOM05D006019 ORTHO05D007900 1.8e-192 676.4 481 71.3
HanXRQChr13g0408251 Helianthus annuus HOM05D006019 ORTHO05D007900 1.1e-191 673.7 485 67.4
Lj1C880T10 Lonicera japonica HOM05D006019 ORTHO05D007900 1.5e-191 673.3 497 70.0
PGSC0003DMG400022300 Solanum tuberosum HOM05D006019 ORTHO05D007900 2.0e-191 672.9 460 72.2
CAN.G337.58 Capsicum annuum HOM05D006019 ORTHO05D007900 1.3e-190 670.2 460 71.7
DCAR_017106 Daucus carota HOM05D006019 ORTHO05D007900 1.7e-190 669.8 442 75.3
Lsat_1_v5_gn_9_90660 Lactuca sativa HOM05D006019 ORTHO05D007900 1.7e-190 669.8 470 69.8
arahy.Tifrunner.gnm1.ann1.G2L6CM Arachis hypogaea HOM05D006019 ORTHO05D007900 2.2e-190 669.5 462 71.9
Oeu026379.1 Olea europaea HOM05D006019 ORTHO05D007900 6.3e-190 667.9 470 70.4
Sopen07g033150 Solanum pennellii HOM05D006019 ORTHO05D007900 8.2e-190 667.5 460 71.3
Cpa.g.sc284.5 Carica papaya HOM05D006019 ORTHO05D007900 1.4e-189 666.8 480 72.1
ECA240G2757 Erigeron canadensis HOM05D006019 ORTHO05D007900 1.8e-189 666.4 476 68.7
THA.LOC104817684 Tarenaya hassleriana HOM05D006019 ORTHO05D007900 2.4e-189 666.0 478 69.5
Solyc07g064950.3 Solanum lycopersicum HOM05D006019 ORTHO05D007900 3.1e-189 665.6 460 71.1
TPR.G35353 Trifolium pratense HOM05D006019 ORTHO05D007900 3.5e-188 662.1 481 69.0
FvH4_3g23540 Fragaria vesca HOM05D006019 ORTHO05D007900 2.9e-187 659.1 470 71.7
AUR62020342 Chenopodium quinoa HOM05D006019 ORTHO05D007900 1.4e-186 656.8 485 67.2
Aqoxy1G02863 Aquilegia oxysepala HOM05D006019 ORTHO05D007900 2.1e-185 652.9 463 69.5
Medtr5g093830 Medicago truncatula HOM05D006019 ORTHO05D007900 3.9e-184 648.7 479 66.8
MBI19_g29437_MAGBIO Magnolia biondii HOM05D006019 ORTHO05D007900 2.0e-183 646.4 481 68.2
EL10Ac4g07692 Beta vulgaris HOM05D006019 ORTHO05D007900 6.3e-182 641.3 504 64.7
TWI39G1205 Tripterygium wilfordii HOM05D006019 ORTHO05D007900 4.5e-180 635.2 480 67.7
PSO541G6030 Papaver somniferum HOM05D006019 ORTHO05D007900 7.7e-180 634.4 473 66.4
PSO675G6628 Papaver somniferum HOM05D006019 ORTHO05D007900 5.0e-179 631.7 473 66.2
Ca_06346_v3 Cicer arietinum L. HOM05D006019 ORTHO05D007900 1.9e-178 629.8 440 70.7
Sp6g17150 Schrenkiella parvula HOM05D006019 ORTHO05D007900 9.4e-178 627.5 496 62.7
FAN16G2690 Fragaria x ananassa HOM05D006019 ORTHO05D007900 1.2e-177 627.1 495 66.3
Thhalv10013195m.g Eutrema salsugineum HOM05D006019 ORTHO05D007900 1.6e-177 626.7 490 63.1
HanXRQChr03g0076861 Helianthus annuus HOM05D006019 ORTHO05D007900 2.1e-177 626.3 460 66.1
arahy.Tifrunner.gnm1.ann1.PR9FWM Arachis hypogaea HOM05D006019 ORTHO05D007900 2.3e-176 622.9 461 67.7
Rhsim04G0016400 Rhododendron simsii HOM05D006019 ORTHO05D000403 3.0e-176 622.5 491 67.4
BcaB05g22192 Brassica carinata HOM05D006019 ORTHO05D007900 5.2e-176 621.7 478 63.4
Carub.0008s1557 Capsella rubella HOM05D006019 ORTHO05D007900 6.8e-176 621.3 477 64.2
AL8G30770 Arabidopsis lyrata HOM05D006019 ORTHO05D007900 8.8e-176 620.9 477 64.2
Psat2g009800 Pisum sativum HOM05D006019 ORTHO05D007900 2.0e-175 619.8 481 63.4
Aa31LG3G11210 Aethionema arabicum HOM05D006019 ORTHO05D007900 4.8e-174 615.1 474 63.7
AT5G55220 Arabidopsis thaliana HOM05D006019 ORTHO05D007900 6.3e-174 614.8 477 63.1
BolC2t07733H Brassica oleracea HOM05D006019 ORTHO05D007900 6.3e-174 614.8 491 62.1
CARHR268580 Cardamine hirsuta HOM05D006019 ORTHO05D007900 1.4e-173 613.6 470 64.5
BraA02t06043Z Brassica rapa HOM05D006019 ORTHO05D007900 1.0e-171 607.4 476 62.8
AUR62015881 Chenopodium quinoa HOM05D006019 ORTHO05D007900 1.6e-169 600.1 497 61.8
Ah.06g182250 Amaranthus hybridus HOM05D006019 ORTHO05D007900 2.0e-167 593.2 485 62.5
ATR1128G029 Amborella trichopoda HOM05D006019 ORTHO05D007900 1.3e-166 590.5 444 65.5
Hund01957 Selenicereus undatus HOM05D006019 ORTHO05D007900 1.7e-166 590.1 488 63.1
C02p16310 Brassica napus HOM05D006019 ORTHO05D000403 4.2e-162 575.5 454 62.3
Os06g0308000 Oryza sativa ssp. japonica HOM05D006019 ORTHO05D007900 2.1e-161 573.2 453 62.5
A02p09780 Brassica napus HOM05D006019 ORTHO05D000403 4.7e-161 572.0 454 61.9
Zm00001eb405570 Zea mays HOM05D006019 ORTHO05D007900 4.1e-157 558.9 456 59.9
BcaC03g14251 Brassica carinata HOM05D006019 ORTHO05D007900 6.6e-155 551.6 478 58.4
Sc16g0005740 Simmondsia chinensis HOM05D006019 ORTHO05D007900 7.3e-146 521.5 403 66.0
unitig_22.g6170 Utricularia gibba HOM05D006019 ORTHO05D007900 8.0e-145 518.1 374 70.6
SGA_v2.0_scaffold171G38908 Striga asiatica HOM05D006019 ORTHO05D007900 5.2e-144 515.4 490 56.5
SalBow8G4839 Salvia bowleyana HOM05D006019 ORTHO05D007900 2.2e-142 510.0 485 56.9
BcaC03g14252 Brassica carinata HOM05D006019 ORTHO05D007900 4.9e-134 482.3 373 61.9
SEGI_28230 Sequoiadendron giganteum HOM05D006019 ORTHO05D007900 2.4e-133 479.9 475 49.9
Pp3c2_30270 Physcomitrium patens HOM05D006019 ORTHO05D007900 1.4e-128 464.2 492 48.4
CDE04G0522 Ceratophyllum demersum HOM05D006019 ORTHO05D007900 3.1e-128 463.0 332 67.5
Pp3c11_10950 Physcomitrium patens HOM05D006019 ORTHO05D007900 6.4e-126 455.3 454 48.9
FAN11G0939 Fragaria x ananassa HOM05D006019 ORTHO05D007900 3.2e-125 453.0 330 68.5
Mapoly0157s0020 Marchantia polymorpha HOM05D006019 ORTHO05D007900 5.1e-123 445.7 453 49.7
AagrBONN_evm.TU.Sc2ySwM_228.3732 Anthoceros agrestis HOM05D006019 ORTHO05D007900 1.5e-119 434.1 466 47.9
FAN25G3210 Fragaria x ananassa HOM05D006019 ORTHO05D007900 3.0e-115 419.9 384 60.9
CBR_g21850 Chara braunii HOM05D006019 ORTHO05D007900 9.6e-114 414.8 475 44.8
SMO361G0007 Selaginella moellendorffii HOM05D006019 ORTHO05D007900 1.6e-105 387.5 440 44.3
MCO13G367 Micromonas commoda HOM05D006019 ORTHO05D007900 5.9e-71 272.7 502 31.7
PRCOL_00002693 Prasinoderma coloniale HOM05D006019 ORTHO05D007900 1.4e-64 251.5 419 34.1
VMungo0464G1494 Vigna mungo HOM05D006019 ORTHO05D007900 1.7e-49 201.4 135 71.1
A10p12490 Brassica napus HOM05D006019 ORTHO05D007900 9.2e-48 195.7 384 38.5
Glyma.14G020800 Glycine max HOM05D006019 ORTHO05D007900 3.8e-46 190.3 138 65.9
Oeu026380.1 Olea europaea HOM05D006019 ORTHO05D007900 4.6e-39 166.8 140 61.4
TAR720G0004 Trochodendron aralioides HOM05D006019 ORTHO05D007900 7.3e-37 159.5 107 74.8
HPP92_015779 Vanilla planifolia HOM05D006019 ORTHO05D007900 1.5e-34 151.8 211 40.3
Cre01.g001750 Chlamydomonas reinhardtii HOM05D006019 ORTHO05D007900 3.9e-30 137.1 440 23.4
VMungo0647G0792 Vigna mungo HOM05D006019 ORTHO05D007900 2.9e-25 120.9 95 67.4
Glyma.14G020666 Glycine max HOM05D006019 ORTHO05D007900 5.4e-24 116.7 93 59.1
Hma1.2p1_4091F.1_g338270 Hydrangea macrophylla HOM05D006019 ORTHO05D007900 2.7e-23 114.4 114 59.6
CDE04G2936 Ceratophyllum demersum HOM05D006019 ORTHO05D007900 6.6e-22 109.8 68 79.4
BolC9t57451H Brassica oleracea HOM05D006019 ORTHO05D007900 3.4e-18 97.4 196 32.7
BraA10t43342Z Brassica rapa HOM05D006019 ORTHO05D007900 1.3e-17 95.5 209 33.0
C09p45770 Brassica napus HOM05D006019 ORTHO05D007900 1.7e-17 95.1 221 32.1
C09p45760 Brassica napus HOM05D006019 ORTHO05D007900 2.4e-16 91.3 114 49.1
BcaC04g20257 Brassica carinata HOM05D006019 ORTHO05D007900 3.1e-11 74.3 74 55.4
unitig_22.g6169 Utricularia gibba HOM05D006019 ORTHO05D007900 1.4e-08 65.5 86 40.7
BolC9t57452H Brassica oleracea HOM05D006019 ORTHO05D000049 5.1e-06 57.0 67 47.8


User provided reference genes

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