Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0026748 Sechium edule HOM05D025218 ORTHO05D025068 5.5e-193 677.6 365 100.0
ClCG06G015430 Citrullus lanatus HOM05D025218 ORTHO05D025068 5.2e-127 458.4 366 67.5
Sed0005774 Sechium edule HOM05D025218 ORTHO05D025068 4.0e-103 379.0 335 65.7
CsaV3_1G003330 Cucumis sativus L. HOM05D025218 ORTHO05D025068 3.2e-84 316.2 290 64.5
MELO3C017252.2 Cucumis melo HOM05D025218 ORTHO05D025068 3.0e-82 309.7 290 59.7
Ciclev10021731m.g Citrus clementina HOM05D003025 ORTHO05D003305 5.2e-26 122.9 305 31.8
Dinv38641 Davidia involucrata HOM05D003025 ORTHO05D003305 2.9e-24 117.1 405 29.9
Prupe.5G210100 Prunus persica HOM05D003025 ORTHO05D003305 2.9e-24 117.1 372 31.7
RcHm_v2.0_Chr7g0183741 Rosa chinensis HOM05D003025 ORTHO05D003305 1.2e-22 111.7 313 31.9
QL10p020762 Quercus lobata HOM05D011573 ORTHO05D003305 2.1e-19 100.9 362 29.6
Duzib205G1035 Durio zibethinus HOM05D003025 ORTHO05D003305 5.2e-18 96.3 363 31.4
MD06G1205800 Malus domestica HOM05D003025 ORTHO05D003305 3.4e-17 93.6 325 28.0
Nn4g23540 Nelumbo nucifera HOM05D003025 ORTHO05D003305 3.4e-17 93.6 350 29.1
Thecc.03G108500 Theobroma cacao HOM05D003025 ORTHO05D003305 9.9e-17 92.0 344 27.6
TAR374G0527 Trochodendron aralioides HOM05D003025 ORTHO05D003305 1.7e-16 91.3 343 28.3
Potri.015G048400 Populus trichocarpa HOM05D003025 ORTHO05D003305 6.4e-16 89.4 330 28.5
TAR622G0187 Trochodendron aralioides HOM05D003025 ORTHO05D003305 1.9e-15 87.8 339 28.0
Gorai.001G067100 Gossypium raimondii HOM05D003025 ORTHO05D003305 4.1e-15 86.7 347 28.8
MD14G1216700 Malus domestica HOM05D003025 ORTHO05D003305 4.1e-15 86.7 317 27.4
GSVIVG01008155001 Vitis vinifera HOM05D003025 ORTHO05D003305 4.1e-15 86.7 353 26.6
Gohir.D07G063600 Gossypium hirsutum HOM05D003025 ORTHO05D003305 1.2e-14 85.1 347 29.1
PGR102G2660 Punica granatum HOM05D003025 ORTHO05D003305 1.6e-14 84.7 341 26.7
Duzib084G0521 Durio zibethinus HOM05D003025 ORTHO05D003305 2.1e-14 84.3 335 26.9
Gohir.A07G058700 Gossypium hirsutum HOM05D003025 ORTHO05D003305 2.7e-14 84.0 347 28.5
PSO782G5508 Papaver somniferum HOM05D003025 ORTHO05D003305 2.7e-14 84.0 363 27.0
FAN13G2721 Fragaria x ananassa HOM05D003025 ORTHO05D003305 1.3e-13 81.6 399 26.6
PSO063G1603 Papaver somniferum HOM05D003025 ORTHO05D003305 1.3e-13 81.6 414 24.6
CiPaw.05G121600 Carya illinoinensis HOM05D003025 ORTHO05D003305 1.7e-13 81.3 388 27.3
PGSC0003DMG404024620 Solanum tuberosum HOM05D017485 ORTHO05D020287 1.7e-13 81.3 305 28.2
CANSAT80G0192 Cannabis sativa HOM05D003025 ORTHO05D003305 5.1e-13 79.7 325 28.3
Sabra15G0078800 Salix brachista HOM05D003025 ORTHO05D003305 5.1e-13 79.7 362 26.5
Lj2g0017874 Lotus japonicus HOM05D003025 ORTHO05D003305 8.6e-13 79.0 392 27.8
GSVIVG01010102001 Vitis vinifera HOM05D003025 ORTHO05D003305 8.6e-13 79.0 364 26.9
FAN18G0971 Fragaria x ananassa HOM05D003025 ORTHO05D003305 1.9e-12 77.8 395 27.3
MELO3C011401.2 Cucumis melo HOM05D003025 ORTHO05D003305 2.5e-12 77.4 337 27.9
COL.COLO4_27800 Corchorus olitorius HOM05D003025 ORTHO05D003305 3.3e-12 77.0 429 25.6
Phvul.003G038300 Phaseolus vulgaris HOM05D003025 ORTHO05D003305 3.3e-12 77.0 364 26.9
FvH4_5g13400 Fragaria vesca HOM05D003025 ORTHO05D003305 4.3e-12 76.6 399 25.8
Gohir.A13G088100 Gossypium hirsutum HOM05D003025 ORTHO05D003305 4.3e-12 76.6 402 27.6
Rhsim12G0071300 Rhododendron simsii HOM05D003025 ORTHO05D003305 5.6e-12 76.3 341 29.6
Gorai.013G097400 Gossypium raimondii HOM05D003025 ORTHO05D003305 7.3e-12 75.9 402 26.9
Sed0016639 Sechium edule HOM05D003025 ORTHO05D003305 7.3e-12 75.9 422 27.3
VMungo1215G0401 Vigna mungo HOM05D003025 ORTHO05D003305 7.3e-12 75.9 377 27.1
CsaV3_6G033910 Cucumis sativus L. HOM05D003025 ORTHO05D003305 9.6e-12 75.5 336 28.3
Hma1.2p1_0060F.1_g032730 Hydrangea macrophylla HOM05D003025 ORTHO05D003305 9.6e-12 75.5 100 47.0
Actinidia19904 Actinidia chinensis HOM05D003025 ORTHO05D003305 1.6e-11 74.7 321 26.8
CiPaw.16G080200 Carya illinoinensis HOM05D003025 ORTHO05D003305 1.6e-11 74.7 90 48.9
Glyma.06G206200 Glycine max HOM05D011573 ORTHO05D014451 1.6e-11 74.7 374 28.1
MD16G1055400 Malus domestica HOM05D003025 ORTHO05D003305 1.6e-11 74.7 87 49.4
Oeu062245.1 Olea europaea HOM05D003025 ORTHO05D003305 2.1e-11 74.3 393 25.4
Gohir.D13G085500 Gossypium hirsutum HOM05D003025 ORTHO05D003305 2.8e-11 73.9 388 27.3
Solyc03g114750.3 Solanum lycopersicum HOM05D017485 ORTHO05D020287 2.8e-11 73.9 306 28.8
ClCG08G010610 Citrullus lanatus HOM05D003025 ORTHO05D003305 4.7e-11 73.2 351 26.5
Migut.L01161 Erythranthe guttata HOM05D003025 ORTHO05D003305 4.7e-11 73.2 339 25.7
CSS0010260 Camellia sinensis var. sinensis HOM05D003025 ORTHO05D003305 6.2e-11 72.8 376 26.9
MD13G1056500 Malus domestica HOM05D003025 ORTHO05D003305 6.2e-11 72.8 59 61.0
Phvul.003G280500 Phaseolus vulgaris HOM05D003025 ORTHO05D003305 8.1e-11 72.4 309 29.1
Glyma.02G122700 Glycine max HOM05D003025 ORTHO05D003305 1.4e-10 71.6 82 50.0
Lalb_Chr10g0099151 Lupinus albus HOM05D003025 ORTHO05D003305 1.8e-10 71.2 123 42.3
HPP92_018243 Vanilla planifolia HOM05D003025 ORTHO05D003305 1.8e-10 71.2 66 59.1
Actinidia07767 Actinidia chinensis HOM05D003025 ORTHO05D003305 3.1e-10 70.5 58 62.1
Ca_05068_v3 Cicer arietinum L. HOM05D003025 ORTHO05D003305 3.1e-10 70.5 388 26.8
Glyma.04G158900 Glycine max HOM05D011573 ORTHO05D014451 4.0e-10 70.1 364 26.1
Medtr2g461480 Medicago truncatula HOM05D011573 ORTHO05D014451 4.0e-10 70.1 312 26.0
Sed0001557 Sechium edule HOM05D003025 ORTHO05D003305 6.8e-10 69.3 356 25.6
Hund09959 Selenicereus undatus HOM05D003025 ORTHO05D003305 6.8e-10 69.3 55 63.6
BcaC04g21446 Brassica carinata HOM05D003025 ORTHO05D003305 8.9e-10 68.9 316 27.5
C09p31660 Brassica napus HOM05D003025 ORTHO05D003305 8.9e-10 68.9 322 28.3
BolC9t56021H Brassica oleracea HOM05D003025 ORTHO05D003305 8.9e-10 68.9 322 28.3
CANSAT64G2528 Cannabis sativa HOM05D003025 ORTHO05D003305 8.9e-10 68.9 82 50.0
CARHR146220 Cardamine hirsuta HOM05D003025 ORTHO05D003305 1.5e-09 68.2 341 25.5
CiPaw.06G095000 Carya illinoinensis HOM05D003025 ORTHO05D003305 1.5e-09 68.2 116 38.8
PSO478G4016 Papaver somniferum HOM05D003025 ORTHO05D003305 1.5e-09 68.2 85 49.4
THA.LOC104801838 Tarenaya hassleriana HOM05D003025 ORTHO05D003305 1.5e-09 68.2 115 37.4
Actinidia31928 Actinidia chinensis HOM05D003025 ORTHO05D003305 2.6e-09 67.4 318 25.5
BcaB07g30644 Brassica carinata HOM05D003025 ORTHO05D003305 2.6e-09 67.4 355 25.4
Manes.14G090300 Manihot esculenta HOM05D003025 ORTHO05D003305 2.6e-09 67.4 401 23.4
HPP92_015551 Vanilla planifolia HOM05D003025 ORTHO05D003305 2.6e-09 67.4 59 55.9
Glyma.01G064900 Glycine max HOM05D003025 ORTHO05D003305 3.4e-09 67.0 60 61.7
Lj1g0004148 Lotus japonicus HOM05D011573 ORTHO05D014451 3.4e-09 67.0 297 25.9
THA.LOC104824052 Tarenaya hassleriana HOM05D003025 ORTHO05D003305 3.4e-09 67.0 206 31.6
Duzib248G1661 Durio zibethinus HOM05D003025 ORTHO05D003305 4.4e-09 66.6 387 25.6
Thhalv10004181m.g Eutrema salsugineum HOM05D003025 ORTHO05D003305 4.4e-09 66.6 407 24.8
Sc04g0007330 Simmondsia chinensis HOM05D003025 ORTHO05D003305 4.4e-09 66.6 369 27.9
ClCG05G023550 Citrullus lanatus HOM05D003025 ORTHO05D003305 5.8e-09 66.2 59 59.3
Lj6A773T133 Lonicera japonica HOM05D003025 ORTHO05D003305 5.8e-09 66.2 385 26.8
MBI14_g31150_MAGBIO Magnolia biondii HOM05D003025 ORTHO05D003305 5.8e-09 66.2 54 57.4
Manes.06G079500 Manihot esculenta HOM05D003025 ORTHO05D003305 5.8e-09 66.2 391 25.6
Dinv34020 Davidia involucrata HOM05D003025 ORTHO05D003305 7.6e-09 65.9 381 27.8
Gohir.A12G159500 Gossypium hirsutum HOM05D003025 ORTHO05D003305 7.6e-09 65.9 60 58.3
Lalb_Chr17g0341461 Lupinus albus HOM05D003025 ORTHO05D003305 7.6e-09 65.9 50 62.0
Medtr5g047930 Medicago truncatula HOM05D003025 ORTHO05D003305 7.6e-09 65.9 365 24.9
Pp3c3_14390 Physcomitrium patens HOM05D067035 ORTHO05D003305 7.6e-09 65.9 116 39.7
Hma1.2p1_0428F.1_g150820 Hydrangea macrophylla HOM05D003025 ORTHO05D003305 9.9e-09 65.5 60 56.7
Thecc.02G322700 Theobroma cacao HOM05D003025 ORTHO05D003305 9.9e-09 65.5 150 38.7
TPR.G38556 Trifolium pratense HOM05D003025 ORTHO05D003305 9.9e-09 65.5 320 25.9
Aa31LG2G6910 Aethionema arabicum HOM05D003025 ORTHO05D003305 1.3e-08 65.1 326 26.7
MSTRG.781 Avicennia marina HOM05D003025 ORTHO05D003305 1.3e-08 65.1 58 55.2
AUR62007872 Chenopodium quinoa HOM05D003025 ORTHO05D003305 1.3e-08 65.1 60 56.7
Gohir.A03G106600 Gossypium hirsutum HOM05D003025 ORTHO05D003305 1.3e-08 65.1 60 58.3
Gohir.D02G131800 Gossypium hirsutum HOM05D003025 ORTHO05D003305 1.3e-08 65.1 60 58.3
Sabra08G0084400 Salix brachista HOM05D003025 ORTHO05D003305 1.3e-08 65.1 124 39.5
Duzib251G0179 Durio zibethinus HOM05D003025 ORTHO05D003305 1.7e-08 64.7 68 55.9
Oeu024157.1 Olea europaea HOM05D003025 ORTHO05D003305 1.7e-08 64.7 98 41.8
AUR62003057 Chenopodium quinoa HOM05D003025 ORTHO05D003305 2.2e-08 64.3 58 58.6
Potri.010G138100 Populus trichocarpa HOM05D003025 ORTHO05D003305 2.2e-08 64.3 162 34.6
Prupe.1G293500 Prunus persica HOM05D003025 ORTHO05D003305 2.2e-08 64.3 59 55.9
THA.LOC104805213 Tarenaya hassleriana HOM05D003025 ORTHO05D003305 2.2e-08 64.3 197 32.5
Ah.03g138600 Amaranthus hybridus HOM05D003025 ORTHO05D003305 2.9e-08 63.9 58 60.3
TPR.G14359 Trifolium pratense HOM05D011573 ORTHO05D014451 2.9e-08 63.9 360 25.3
Gohir.D12G162800 Gossypium hirsutum HOM05D003025 ORTHO05D003305 3.8e-08 63.5 60 56.7
Gorai.008G175400 Gossypium raimondii HOM05D003025 ORTHO05D003305 3.8e-08 63.5 60 56.7
Oeu003749.3 Olea europaea HOM05D003025 ORTHO05D003305 3.8e-08 63.5 60 56.7
PGSC0003DMG400001936 Solanum tuberosum HOM05D003025 ORTHO05D003305 3.8e-08 63.5 407 23.3
vmacro10474 Vaccinium macrocarpon HOM05D003025 ORTHO05D003305 3.8e-08 63.5 54 61.1
VMungo1309G0453 Vigna mungo HOM05D011573 ORTHO05D014451 3.8e-08 63.5 358 24.6
Lj3A1027T87 Lonicera japonica HOM05D003025 ORTHO05D003305 4.9e-08 63.2 374 25.7
Nitab4.5_0001071g0040 Nicotiana tabacum HOM05D003025 ORTHO05D003305 4.9e-08 63.2 223 29.6
TWI31G1177 Tripterygium wilfordii HOM05D003025 ORTHO05D003305 4.9e-08 63.2 252 27.8
arahy.Tifrunner.gnm1.ann1.161SS5 Arachis hypogaea HOM05D003025 ORTHO05D003305 6.4e-08 62.8 370 24.9
C02p51790 Brassica napus HOM05D003025 ORTHO05D003305 6.4e-08 62.8 308 25.6
CDE10G0152 Ceratophyllum demersum HOM05D003025 ORTHO05D003305 8.4e-08 62.4 273 24.9
Nitab4.5_0005994g0010 Nicotiana tabacum HOM05D017485 ORTHO05D020287 8.4e-08 62.4 291 24.7
SGA_v2.0_scaffold16G07826 Striga asiatica HOM05D003025 ORTHO05D003305 8.4e-08 62.4 58 58.6
SGA_v2.0_scaffold287G47189 Striga asiatica HOM05D003025 ORTHO05D003305 8.4e-08 62.4 56 55.4
Carub.0001s1338 Capsella rubella HOM05D003025 ORTHO05D003305 1.1e-07 62.0 51 62.7
HanXRQChr12g0365071 Helianthus annuus HOM05D003025 ORTHO05D003305 1.1e-07 62.0 62 56.5
HanXRQChr17g0568661 Helianthus annuus HOM05D003025 ORTHO05D003305 1.1e-07 62.0 58 55.2
Nitab4.5_0002467g0070 Nicotiana tabacum HOM05D017485 ORTHO05D020287 1.1e-07 62.0 293 25.9
Sopen04g001270 Solanum pennellii HOM05D003025 ORTHO05D003305 1.1e-07 62.0 60 56.7
Cc11_g11550 Coffea canephora HOM05D003025 ORTHO05D003305 1.4e-07 61.6 125 36.0
Os04g0467100 Oryza sativa ssp. japonica HOM05D003025 ORTHO05D003305 1.4e-07 61.6 54 57.4
Potri.008G111800 Populus trichocarpa HOM05D003025 ORTHO05D003305 1.4e-07 61.6 206 32.0
VMungo0251G3127 Vigna mungo HOM05D003025 ORTHO05D003305 1.4e-07 61.6 380 26.8
Cc04_g08270 Coffea canephora HOM05D003025 ORTHO05D003305 1.9e-07 61.2 86 47.7
Lsat_1_v5_gn_8_37061 Lactuca sativa HOM05D003025 ORTHO05D003305 1.9e-07 61.2 66 54.5
Rhsim09G0122100 Rhododendron simsii HOM05D003025 ORTHO05D003305 1.9e-07 61.2 385 24.9
unitig_62.g23701 Utricularia gibba HOM05D003025 ORTHO05D003305 1.9e-07 61.2 147 38.1
MSTRG.7727 Avicennia marina HOM05D003025 ORTHO05D003305 2.4e-07 60.8 60 55.0
Dinv15582 Davidia involucrata HOM05D003025 ORTHO05D003305 2.4e-07 60.8 68 51.5
Eucgr.G02421 Eucalyptus grandis HOM05D003025 ORTHO05D003305 2.4e-07 60.8 148 36.5
HanXRQChr08g0215591 Helianthus annuus HOM05D003025 ORTHO05D003305 3.2e-07 60.5 214 30.8
Gorai.005G147700 Gossypium raimondii HOM05D003025 ORTHO05D003305 4.2e-07 60.1 191 33.0
Lalb_Chr04g0255461 Lupinus albus HOM05D003025 ORTHO05D003305 4.2e-07 60.1 300 24.7
Phvul.009G203900 Phaseolus vulgaris HOM05D011573 ORTHO05D014451 4.2e-07 60.1 358 24.0
SEGI_24332 Sequoiadendron giganteum HOM05D066507 ORTHO05D003305 4.2e-07 60.1 49 59.2
Sed0017206 Sechium edule HOM05D003025 ORTHO05D003305 5.4e-07 59.7 55 52.7
Sc11g0002650 Simmondsia chinensis HOM05D003025 ORTHO05D003305 5.4e-07 59.7 378 24.6
SGA_v2.0_scaffold59G20657 Striga asiatica HOM05D003025 ORTHO05D003305 5.4e-07 59.7 379 25.1
TWI79G0747 Tripterygium wilfordii HOM05D003025 ORTHO05D003305 5.4e-07 59.7 53 56.6
vmacro01298 Vaccinium macrocarpon HOM05D003025 ORTHO05D003305 5.4e-07 59.7 353 25.8
Sp2g14630 Schrenkiella parvula HOM05D003025 ORTHO05D003305 7.1e-07 59.3 96 41.7
unitig_52.g17161 Utricularia gibba HOM05D003025 ORTHO05D003305 7.1e-07 59.3 58 56.9
CSS0030291 Camellia sinensis var. sinensis HOM05D003025 ORTHO05D003305 1.2e-06 58.5 300 25.0
CAN.G982.40 Capsicum annuum HOM05D017485 ORTHO05D020287 1.2e-06 58.5 304 26.0
Psat2g085960 Pisum sativum HOM05D003025 ORTHO05D003305 1.2e-06 58.5 397 24.2
Sopen05g006590 Solanum pennellii HOM05D003025 ORTHO05D003305 1.2e-06 58.5 53 54.7
Os02g0582100 Oryza sativa ssp. japonica HOM05D003025 ORTHO05D003305 1.6e-06 58.2 136 33.8
Solyc04g005290.3 Solanum lycopersicum HOM05D003025 ORTHO05D003305 1.6e-06 58.2 407 23.1
EL10Ac6g14672 Beta vulgaris HOM05D003025 ORTHO05D003305 2.1e-06 57.8 50 58.0
CsaV3_5G033470 Cucumis sativus L. HOM05D003025 ORTHO05D003305 2.1e-06 57.8 59 52.5
Peaxi162Scf00188g01025 Petunia axillaris HOM05D003025 ORTHO05D003305 2.1e-06 57.8 371 24.0
BraA06t27196Z Brassica rapa HOM05D003025 ORTHO05D003305 2.7e-06 57.4 363 27.3
CDE05G3645 Ceratophyllum demersum HOM05D003025 ORTHO05D003305 2.7e-06 57.4 45 64.4
DCAR_030058 Daucus carota HOM05D003025 ORTHO05D003305 2.7e-06 57.4 419 24.1
MBI15_g31908_MAGBIO Magnolia biondii HOM05D003025 ORTHO05D003305 2.7e-06 57.4 227 29.1
Zm00001eb080280 Zea mays HOM05D041475 ORTHO05D003305 2.7e-06 57.4 54 51.9
BcaC06g31142 Brassica carinata HOM05D003025 ORTHO05D003305 3.5e-06 57.0 321 28.0
Sopen03g033830 Solanum pennellii HOM05D017485 ORTHO05D020287 4.6e-06 56.6 269 27.5
ATR0691G160 Amborella trichopoda HOM05D003025 ORTHO05D003305 6.0e-06 56.2 54 53.7
PSO017G6048 Papaver somniferum HOM05D003025 ORTHO05D003305 6.0e-06 56.2 393 24.7
Pp3c13_23680 Physcomitrium patens HOM05D067035 ORTHO05D003305 6.0e-06 56.2 60 53.3
Psat1g126360 Pisum sativum HOM05D011573 ORTHO05D014451 6.0e-06 56.2 310 27.1
arahy.Tifrunner.gnm1.ann1.8UFH9N Arachis hypogaea HOM05D003025 ORTHO05D003305 7.8e-06 55.8 375 25.1
Sabra10G0106400 Salix brachista HOM05D003025 ORTHO05D003305 7.8e-06 55.8 54 51.9


User provided reference genes

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