Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0026735 Sechium edule HOM05D002165 ORTHO05D001531 2.4e-156 555.4 277 100.0
Sed0017106 Sechium edule HOM05D007588 ORTHO05D001339 5.5e-36 155.6 122 73.8
Sed0012842 Sechium edule HOM05D002165 ORTHO05D001531 3.0e-34 149.8 92 75.0
CsaV3_6G002640 Cucumis sativus L. HOM05D002165 ORTHO05D001531 3.3e-33 146.4 94 73.4
MELO3C025020.2 Cucumis melo HOM05D002165 ORTHO05D001531 2.2e-32 143.7 94 71.3
MELO3C025017.2 Cucumis melo HOM05D002165 ORTHO05D001531 4.1e-31 139.4 93 66.7
CsaV3_6G002670 Cucumis sativus L. HOM05D002165 ORTHO05D001531 9.1e-31 138.3 93 67.7
ClCG00G002170 Citrullus lanatus HOM05D002165 ORTHO05D001531 1.9e-28 130.6 99 61.6
ClCG08G002310 Citrullus lanatus HOM05D002165 ORTHO05D001531 1.9e-28 130.6 99 61.6
ClCG08G002360 Citrullus lanatus HOM05D002165 ORTHO05D001531 1.9e-28 130.6 99 61.6
MELO3C025018.2 Cucumis melo HOM05D002165 ORTHO05D001531 3.2e-28 129.8 94 66.0
CsaV3_6G002630 Cucumis sativus L. HOM05D002165 ORTHO05D001531 2.0e-25 120.6 88 68.2
Sed0005500 Sechium edule HOM05D002165 ORTHO05D001531 2.6e-25 120.2 92 62.0
Sed0022046 Sechium edule HOM05D002165 ORTHO05D001531 3.4e-25 119.8 87 65.5
CsaV3_6G002650 Cucumis sativus L. HOM05D002165 ORTHO05D001531 5.7e-25 119.0 94 62.8
Sed0009609 Sechium edule HOM05D002165 ORTHO05D001531 1.3e-24 117.9 92 62.0
ClCG08G002330 Citrullus lanatus HOM05D002165 ORTHO05D001531 2.2e-24 117.1 94 60.6
ClCG08G002370 Citrullus lanatus HOM05D002165 ORTHO05D001531 2.2e-24 117.1 94 60.6
ClCG08G002340 Citrullus lanatus HOM05D002165 ORTHO05D001531 2.8e-24 116.7 94 60.6
CsaV3_6G002620 Cucumis sativus L. HOM05D002165 ORTHO05D001531 8.3e-24 115.2 76 69.7
Sed0011742 Sechium edule HOM05D002165 ORTHO05D001531 8.3e-24 115.2 93 60.2
Sed0027158 Sechium edule HOM05D002165 ORTHO05D001531 1.2e-22 111.3 93 54.8
MELO3C025021.2 Cucumis melo HOM05D002165 ORTHO05D001531 4.5e-22 109.4 88 62.5
MELO3C015240.2 Cucumis melo HOM05D002165 ORTHO05D001531 2.2e-21 107.1 91 57.1
ClCG08G002280 Citrullus lanatus HOM05D002165 ORTHO05D001531 1.1e-20 104.8 94 56.4
CsaV3_1G038050 Cucumis sativus L. HOM05D002165 ORTHO05D001531 1.1e-20 104.8 91 57.1
ClCG08G002300 Citrullus lanatus HOM05D002165 ORTHO05D001531 1.9e-20 104.0 61 72.1
ClCG03G017890 Citrullus lanatus HOM05D002165 ORTHO05D001531 3.6e-19 99.8 94 57.4
Sed0013340 Sechium edule HOM05D002165 ORTHO05D001531 1.4e-18 97.8 93 51.6
FAN05G4164 Fragaria x ananassa HOM05D002165 ORTHO05D001531 5.0e-13 79.3 85 47.1
FvH4_6g08530 Fragaria vesca HOM05D002165 ORTHO05D001531 6.6e-13 79.0 85 47.1
FAN14G5435 Fragaria x ananassa HOM05D002165 ORTHO05D001531 6.6e-13 79.0 85 47.1
FAN02G1676 Fragaria x ananassa HOM05D002165 ORTHO05D001531 1.1e-12 78.2 85 45.9
FAN09G0584 Fragaria x ananassa HOM05D002165 ORTHO05D001531 1.1e-12 78.2 85 45.9
Prupe.6G304300 Prunus persica HOM05D002165 ORTHO05D001531 1.1e-12 78.2 84 47.6
Aa31LG11G9930 Aethionema arabicum HOM05D002165 ORTHO05D001531 7.3e-12 75.5 78 51.3
Aqoxy5G02840 Aquilegia oxysepala HOM05D002165 ORTHO05D001531 1.2e-11 74.7 82 51.2
Cpa.g.sc48.225 Carica papaya HOM05D002165 ORTHO05D001531 1.2e-11 74.7 86 50.0
RcHm_v2.0_Chr3g0458591 Rosa chinensis HOM05D002165 ORTHO05D001531 2.1e-11 73.9 86 43.0
RcHm_v2.0_Chr1g0321401 Rosa chinensis HOM05D002165 ORTHO05D001531 2.8e-11 73.6 81 45.7
Carub.0006s2437 Capsella rubella HOM05D002165 ORTHO05D001531 4.7e-11 72.8 78 51.3
MD04G1186400 Malus domestica HOM05D002165 ORTHO05D001531 4.7e-11 72.8 85 44.7
CARHR186860 Cardamine hirsuta HOM05D002165 ORTHO05D001531 8.0e-11 72.0 80 51.2
Atru.chr12.1534 Acer truncatum HOM05D002165 ORTHO05D001531 1.0e-10 71.6 83 45.8
Atru.chr12.1536 Acer truncatum HOM05D002165 ORTHO05D001531 1.0e-10 71.6 83 45.8
AL6G38560 Arabidopsis lyrata HOM05D002165 ORTHO05D001531 1.0e-10 71.6 79 49.4
Prupe.6G304200 Prunus persica HOM05D002165 ORTHO05D001531 1.0e-10 71.6 84 45.2
THA.LOC104818754 Tarenaya hassleriana HOM05D002165 ORTHO05D001531 1.4e-10 71.2 87 48.3
Ciclev10013222m.g Citrus clementina HOM05D002165 ORTHO05D001531 3.0e-10 70.1 83 45.8
Sed0016802 Sechium edule HOM05D002165 ORTHO05D001531 4.0e-10 69.7 86 45.3
Gohir.A02G059800 Gossypium hirsutum HOM05D002165 ORTHO05D001531 1.2e-09 68.2 86 45.3
Gohir.D02G065400 Gossypium hirsutum HOM05D002165 ORTHO05D001531 1.2e-09 68.2 86 45.3
Gorai.005G074100 Gossypium raimondii HOM05D002165 ORTHO05D001531 1.2e-09 68.2 86 45.3
ClCG02G014640 Citrullus lanatus HOM05D002165 ORTHO05D001531 1.5e-09 67.8 85 50.6
Ciclev10013220m.g Citrus clementina HOM05D002165 ORTHO05D001531 1.5e-09 67.8 81 43.2
Thhalv10021847m.g Eutrema salsugineum HOM05D002165 ORTHO05D001531 1.5e-09 67.8 81 46.9
Aa31LG5G16230 Aethionema arabicum HOM05D002165 ORTHO05D001531 2.0e-09 67.4 84 50.0
Sed0002745 Sechium edule HOM05D002165 ORTHO05D001531 2.0e-09 67.4 84 48.8
BcaC01g04301 Brassica carinata HOM05D002165 ORTHO05D001531 3.4e-09 66.6 83 47.0
BcaNung03907 Brassica carinata HOM05D002165 ORTHO05D001531 3.4e-09 66.6 78 47.4
A06p36950 Brassica napus HOM05D002165 ORTHO05D001531 3.4e-09 66.6 78 47.4
C03p41790 Brassica napus HOM05D002165 ORTHO05D001531 3.4e-09 66.6 83 47.0
BolC3t16462H Brassica oleracea HOM05D002165 ORTHO05D001531 3.4e-09 66.6 83 47.0
BraA06t26620Z Brassica rapa HOM05D002165 ORTHO05D001531 3.4e-09 66.6 78 47.4
Eucgr.H01325 Eucalyptus grandis HOM05D002165 ORTHO05D001531 3.4e-09 66.6 84 47.6
Eucgr.H01326 Eucalyptus grandis HOM05D002165 ORTHO05D001531 3.4e-09 66.6 84 47.6
Thhalv10005460m.g Eutrema salsugineum HOM05D002165 ORTHO05D001531 4.4e-09 66.2 78 46.2
TAR633G1086 Trochodendron aralioides HOM05D002165 ORTHO05D001531 4.4e-09 66.2 84 44.0
BcaNung03681 Brassica carinata HOM05D002165 ORTHO05D001531 5.7e-09 65.9 77 48.1
C07p41550 Brassica napus HOM05D002165 ORTHO05D001531 5.7e-09 65.9 77 48.1
BolC7t44687H Brassica oleracea HOM05D002165 ORTHO05D001531 5.7e-09 65.9 77 48.1
Eucgr.H01327 Eucalyptus grandis HOM05D002165 ORTHO05D001531 7.5e-09 65.5 82 47.6
Eucgr.H01329 Eucalyptus grandis HOM05D002165 ORTHO05D001531 7.5e-09 65.5 82 47.6
Sp3g04720 Schrenkiella parvula HOM05D002165 ORTHO05D001531 7.5e-09 65.5 88 46.6
Sed0018337 Sechium edule HOM05D002165 ORTHO05D001531 7.5e-09 65.5 84 48.8
TAR362G0276 Trochodendron aralioides HOM05D002165 ORTHO05D001531 7.5e-09 65.5 84 44.0
BcaB04g19240 Brassica carinata HOM05D002165 ORTHO05D001531 9.8e-09 65.1 83 45.8
A03p34320 Brassica napus HOM05D002165 ORTHO05D001531 9.8e-09 65.1 83 45.8
BraA03t12608Z Brassica rapa HOM05D002165 ORTHO05D001531 9.8e-09 65.1 83 45.8
Carub.0003s0521 Capsella rubella HOM05D002165 ORTHO05D001531 9.8e-09 65.1 74 52.7
Ciclev10013801m.g Citrus clementina HOM05D002165 ORTHO05D001531 9.8e-09 65.1 80 43.8
MELO3C004151.2 Cucumis melo HOM05D002165 ORTHO05D001531 9.8e-09 65.1 76 50.0
Actinidia17737 Actinidia chinensis HOM05D002165 ORTHO05D001531 1.3e-08 64.7 98 43.9
BcaC03g17834 Brassica carinata HOM05D002165 ORTHO05D001531 1.3e-08 64.7 80 45.0
BraA02t08873Z Brassica rapa HOM05D002165 ORTHO05D001531 1.3e-08 64.7 78 46.2
BcaNung06223 Brassica carinata HOM05D002165 ORTHO05D001531 1.7e-08 64.3 78 46.2
A02p39040 Brassica napus HOM05D002165 ORTHO05D001531 1.7e-08 64.3 78 46.2
A09p05720 Brassica napus HOM05D002165 ORTHO05D001531 1.7e-08 64.3 81 45.7
C02p58650 Brassica napus HOM05D002165 ORTHO05D001531 1.7e-08 64.3 78 46.2
BolC2t11925H Brassica oleracea HOM05D002165 ORTHO05D001531 1.7e-08 64.3 78 46.2
BraA09t36213Z Brassica rapa HOM05D002165 ORTHO05D001531 1.7e-08 64.3 81 45.7
CsaV3_3G015630 Cucumis sativus L. HOM05D002165 ORTHO05D001531 1.7e-08 64.3 72 45.8
AL3G16610 Arabidopsis lyrata HOM05D002165 ORTHO05D001531 2.2e-08 63.9 84 47.6
BcaB07g29941 Brassica carinata HOM05D002165 ORTHO05D001531 2.2e-08 63.9 78 46.2
Eucgr.H01324 Eucalyptus grandis HOM05D002165 ORTHO05D001531 2.2e-08 63.9 84 46.4
Eucgr.H01332 Eucalyptus grandis HOM05D002165 ORTHO05D001531 2.2e-08 63.9 85 44.7
Eucgr.H01333 Eucalyptus grandis HOM05D002165 ORTHO05D001531 2.2e-08 63.9 84 46.4
Medtr1g084920 Medicago truncatula HOM05D008018 ORTHO05D001531 2.2e-08 63.9 79 43.0
Thecc.09G084900 Theobroma cacao HOM05D002165 ORTHO05D001531 2.2e-08 63.9 73 46.6
CARHR080310 Cardamine hirsuta HOM05D002165 ORTHO05D001531 3.7e-08 63.2 76 48.7
AT3G05858 Arabidopsis thaliana HOM05D002165 ORTHO05D001531 4.9e-08 62.8 76 48.7
BcaC04g23632 Brassica carinata HOM05D002165 ORTHO05D001531 4.9e-08 62.8 73 46.6
C09p06310 Brassica napus HOM05D002165 ORTHO05D001531 4.9e-08 62.8 73 46.6
BolC9t53551H Brassica oleracea HOM05D002165 ORTHO05D001531 4.9e-08 62.8 73 46.6
Migut.N00975 Erythranthe guttata HOM05D002165 ORTHO05D001531 4.9e-08 62.8 64 50.0
Thecc.04G314700 Theobroma cacao HOM05D002165 ORTHO05D001531 4.9e-08 62.8 90 43.3
Eucgr.H01330 Eucalyptus grandis HOM05D002165 ORTHO05D001531 8.3e-08 62.0 80 47.5
Psat6g154200 Pisum sativum HOM05D008018 ORTHO05D001531 8.3e-08 62.0 82 43.9
Gohir.D09G243000 Gossypium hirsutum HOM05D002165 ORTHO05D001531 1.1e-07 61.6 90 42.2
Gorai.006G266800 Gossypium raimondii HOM05D002165 ORTHO05D001531 1.1e-07 61.6 90 42.2
Nitab4.5_0002516g0010 Nicotiana tabacum HOM05D002165 ORTHO05D001531 1.1e-07 61.6 64 50.0
PSO761G0534 Papaver somniferum HOM05D002165 ORTHO05D001531 1.1e-07 61.6 88 37.5
Cc02_g35880 Coffea canephora HOM05D002165 ORTHO05D001531 1.4e-07 61.2 70 50.0
Lsat_1_v5_gn_9_85080 Lactuca sativa HOM05D002165 ORTHO05D001531 1.4e-07 61.2 69 49.3
DCAR_001884 Daucus carota HOM05D002165 ORTHO05D001531 1.8e-07 60.8 69 47.8
Eucgr.H01328 Eucalyptus grandis HOM05D002165 ORTHO05D001531 1.8e-07 60.8 80 46.2
Gohir.A09G242300 Gossypium hirsutum HOM05D002165 ORTHO05D001531 1.8e-07 60.8 90 41.1
Sed0018176 Sechium edule HOM05D002165 ORTHO05D001531 1.8e-07 60.8 88 44.3
BcaB04g19717 Brassica carinata HOM05D002165 ORTHO05D001531 2.4e-07 60.5 78 43.6
MELO3C006762.2 Cucumis melo HOM05D002165 ORTHO05D001531 2.4e-07 60.5 90 38.9
DCAR_001885 Daucus carota HOM05D002165 ORTHO05D001531 2.4e-07 60.5 72 50.0
DCAR_001886 Daucus carota HOM05D002165 ORTHO05D001531 2.4e-07 60.5 69 46.4
AT5G26620 Arabidopsis thaliana HOM05D002165 ORTHO05D001531 3.2e-07 60.1 63 50.8
Eucgr.H01334 Eucalyptus grandis HOM05D002165 ORTHO05D001531 3.2e-07 60.1 83 44.6
Oeu062787.1 Olea europaea HOM05D002165 ORTHO05D001531 3.2e-07 60.1 69 47.8
CSS0027376 Camellia sinensis var. sinensis HOM05D002165 ORTHO05D001531 4.1e-07 59.7 60 51.7
TPR.G2624 Trifolium pratense HOM05D008018 ORTHO05D001531 4.1e-07 59.7 82 40.2
BcaC05g29776 Brassica carinata HOM05D002165 ORTHO05D001531 5.4e-07 59.3 76 43.4
Eucgr.H01321 Eucalyptus grandis HOM05D002165 ORTHO05D001531 5.4e-07 59.3 80 46.2
Psat6g154080 Pisum sativum HOM05D008018 ORTHO05D001531 5.4e-07 59.3 82 41.5
Thecc.05G329700 Theobroma cacao HOM05D002165 ORTHO05D001531 5.4e-07 59.3 88 39.8
Eucgr.H01323 Eucalyptus grandis HOM05D002165 ORTHO05D001531 7.0e-07 58.9 67 47.8
Psat6g153800 Pisum sativum HOM05D008018 ORTHO05D001531 7.0e-07 58.9 93 38.7
TWI12G1307 Tripterygium wilfordii HOM05D002165 ORTHO05D001531 7.0e-07 58.9 85 41.2
Ciclev10013684m.g Citrus clementina HOM05D002165 ORTHO05D001531 9.2e-07 58.5 80 41.2
Nitab4.5_0000800g0060 Nicotiana tabacum HOM05D002165 ORTHO05D001531 9.2e-07 58.5 65 52.3
Nitab4.5_0003573g0030 Nicotiana tabacum HOM05D002165 ORTHO05D001531 9.2e-07 58.5 65 52.3
Nitab4.5_0003573g0040 Nicotiana tabacum HOM05D002165 ORTHO05D001531 9.2e-07 58.5 65 52.3
DCAR_002291 Daucus carota HOM05D002165 ORTHO05D001531 1.2e-06 58.2 69 46.4
Duzib128G1662 Durio zibethinus HOM05D002165 ORTHO05D001531 1.2e-06 58.2 77 39.0
Migut.B00883 Erythranthe guttata HOM05D002165 ORTHO05D001531 1.2e-06 58.2 66 47.0
Oeu000103.1 Olea europaea HOM05D008018 ORTHO05D001531 1.6e-06 57.8 70 44.3
Psat6g154040 Pisum sativum HOM05D008018 ORTHO05D001531 1.6e-06 57.8 86 36.0
BcaC05g30083 Brassica carinata HOM05D002165 ORTHO05D001531 2.0e-06 57.4 76 42.1
A05p42200 Brassica napus HOM05D002165 ORTHO05D001531 2.0e-06 57.4 76 42.1
BraA05t22939Z Brassica rapa HOM05D002165 ORTHO05D001531 2.0e-06 57.4 76 42.1
Ca_10206_v3 Cicer arietinum L. HOM05D008018 ORTHO05D001531 2.0e-06 57.4 80 43.8
Gohir.D13G184400 Gossypium hirsutum HOM05D002165 ORTHO05D001531 2.0e-06 57.4 74 44.6
Gorai.013G210100 Gossypium raimondii HOM05D002165 ORTHO05D001531 2.0e-06 57.4 74 44.6
C05p61420 Brassica napus HOM05D002165 ORTHO05D001531 2.7e-06 57.0 76 42.1
BolC5t34800H Brassica oleracea HOM05D002165 ORTHO05D001531 2.7e-06 57.0 76 42.1
COL.COLO4_36933 Corchorus olitorius HOM05D002165 ORTHO05D001531 2.7e-06 57.0 90 44.4
Eucgr.H01331 Eucalyptus grandis HOM05D002165 ORTHO05D001531 2.7e-06 57.0 84 39.3
Glyma.20G091900 Glycine max HOM05D008018 ORTHO05D001531 2.7e-06 57.0 79 40.5
Psat3g015160 Pisum sativum HOM05D008018 ORTHO05D001531 2.7e-06 57.0 78 39.7
Medtr0187s0020 Medicago truncatula HOM05D008018 ORTHO05D001531 3.5e-06 56.6 82 41.5
Medtr1g484990 Medicago truncatula HOM05D008018 ORTHO05D001531 3.5e-06 56.6 82 42.7
Phvul.007G205400 Phaseolus vulgaris HOM05D008018 ORTHO05D001531 3.5e-06 56.6 77 45.5
Phvul.007G205600 Phaseolus vulgaris HOM05D008018 ORTHO05D001531 3.5e-06 56.6 77 45.5
Psat2g102400 Pisum sativum HOM05D008018 ORTHO05D001531 3.5e-06 56.6 87 35.6
Psat2g102480 Pisum sativum HOM05D008018 ORTHO05D001531 3.5e-06 56.6 87 35.6
Psat2g102520 Pisum sativum HOM05D008018 ORTHO05D001531 3.5e-06 56.6 86 34.9
Psat6g157040 Pisum sativum HOM05D008018 ORTHO05D001531 3.5e-06 56.6 78 42.3
Ciclev10010714m.g Citrus clementina HOM05D002165 ORTHO05D001531 4.6e-06 56.2 76 43.4
Gohir.A13G177800 Gossypium hirsutum HOM05D002165 ORTHO05D001531 4.6e-06 56.2 74 44.6
Potri.010G003900 Populus trichocarpa HOM05D002165 ORTHO05D001531 4.6e-06 56.2 88 44.3
Glyma.15G185600 Glycine max HOM05D002165 ORTHO05D001531 5.9e-06 55.8 43 58.1
Medtr1g485020 Medicago truncatula HOM05D008018 ORTHO05D001531 5.9e-06 55.8 82 42.7
Prupe.4G278700 Prunus persica HOM05D002165 ORTHO05D001531 5.9e-06 55.8 83 43.4
TPR.G2630 Trifolium pratense HOM05D008018 ORTHO05D001531 5.9e-06 55.8 78 44.9
GSVIVG01017707001 Vitis vinifera HOM05D002165 ORTHO05D001531 5.9e-06 55.8 83 44.6
Glyma.10G143300 Glycine max HOM05D008018 ORTHO05D001531 7.8e-06 55.5 80 41.2
Psat6g154120 Pisum sativum HOM05D008018 ORTHO05D001531 7.8e-06 55.5 74 43.2


User provided reference genes

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