Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0026714 Sechium edule HOM05D004288 ORTHO05D004997 5.6e-65 250.8 123 100.0
MELO3C016806.2 Cucumis melo HOM05D004288 ORTHO05D004997 2.8e-32 142.1 118 64.4
ClCG05G020460 Citrullus lanatus HOM05D004288 ORTHO05D004997 6.9e-31 137.5 95 71.6
CsaV3_4G034910 Cucumis sativus L. HOM05D004288 ORTHO05D003449 1.0e-21 107.1 61 82.0
ClCG05G020480 Citrullus lanatus HOM05D004288 ORTHO05D004997 5.1e-18 94.7 126 47.6
Sed0005367 Sechium edule HOM05D004288 ORTHO05D004997 2.5e-17 92.4 110 47.3
Sed0012219 Sechium edule HOM05D004288 ORTHO05D004997 1.5e-14 83.2 92 50.0
GSVIVG01009362001 Vitis vinifera HOM05D004288 ORTHO05D004997 5.9e-14 81.3 106 48.1
CiPaw.08G049000 Carya illinoinensis HOM05D004288 ORTHO05D004997 7.7e-14 80.9 112 42.9
MELO3C032376.2 Cucumis melo HOM05D004288 ORTHO05D004997 1.3e-13 80.1 58 63.8
Gohir.A05G208400 Gossypium hirsutum HOM05D004288 ORTHO05D004997 1.7e-13 79.7 116 45.7
CiPaw.07G176600 Carya illinoinensis HOM05D004288 ORTHO05D004997 8.5e-13 77.4 63 58.7
CiPaw.13G085100 Carya illinoinensis HOM05D004288 ORTHO05D004997 1.4e-12 76.6 87 46.0
MD15G1071700 Malus domestica HOM05D004288 ORTHO05D004997 1.4e-12 76.6 115 43.5
CANSAT25G2350 Cannabis sativa HOM05D004288 ORTHO05D004997 1.9e-12 76.3 47 70.2
Gohir.D05G211900 Gossypium hirsutum HOM05D004288 ORTHO05D004997 2.5e-12 75.9 116 44.8
Gorai.009G218500 Gossypium raimondii HOM05D004288 ORTHO05D004997 2.5e-12 75.9 116 44.8
MD08G1087000 Malus domestica HOM05D004288 ORTHO05D004997 3.2e-12 75.5 113 42.5
TAR376G0993 Trochodendron aralioides HOM05D004288 ORTHO05D004997 3.2e-12 75.5 110 41.8
CiPaw.08G113500 Carya illinoinensis HOM05D004288 ORTHO05D004997 5.5e-12 74.7 87 47.1
CiPaw.04G152800 Carya illinoinensis HOM05D004288 ORTHO05D004997 7.2e-12 74.3 62 58.1
Actinidia22683 Actinidia chinensis HOM05D004288 ORTHO05D004997 9.4e-12 73.9 82 48.8
Dinv44970 Davidia involucrata HOM05D004288 ORTHO05D004997 9.4e-12 73.9 57 61.4
Duzib041G0778 Durio zibethinus HOM05D004288 ORTHO05D004997 9.4e-12 73.9 101 48.5
TAR628G0045 Trochodendron aralioides HOM05D004288 ORTHO05D004997 9.4e-12 73.9 109 42.2
Thecc.08G091000 Theobroma cacao HOM05D004288 ORTHO05D004997 1.2e-11 73.6 48 75.0
vmacro21447 Vaccinium macrocarpon HOM05D004288 ORTHO05D004997 1.2e-11 73.6 116 43.1
Actinidia10187 Actinidia chinensis HOM05D004288 ORTHO05D004997 1.6e-11 73.2 82 50.0
Cfa013675 Carpinus fangiana HOM05D004288 ORTHO05D004997 1.6e-11 73.2 58 62.1
RcHm_v2.0_Chr6g0309361 Rosa chinensis HOM05D004288 ORTHO05D004997 2.1e-11 72.8 111 43.2
Hma1.2p1_0819F.1_g223820 Hydrangea macrophylla HOM05D004288 ORTHO05D004997 7.9e-11 70.9 48 66.7
Prupe.1G424700 Prunus persica HOM05D004288 ORTHO05D004997 1.4e-10 70.1 72 51.4
Duzib116G0008 Durio zibethinus HOM05D004288 ORTHO05D004997 1.8e-10 69.7 116 44.8
HanXRQChr01g0027971 Helianthus annuus HOM05D004288 ORTHO05D004997 3.0e-10 68.9 46 63.0
Atru.chr13.813 Acer truncatum HOM05D004288 ORTHO05D004997 5.1e-10 68.2 108 42.6
FAN27G1232 Fragaria x ananassa HOM05D004288 ORTHO05D004997 5.1e-10 68.2 116 40.5
Rhsim06G0060800 Rhododendron simsii HOM05D004288 ORTHO05D004997 6.7e-10 67.8 115 40.9
Actinidia38098 Actinidia chinensis HOM05D004288 ORTHO05D004997 8.8e-10 67.4 118 42.4
Ciclev10002881m.g Citrus clementina HOM05D004288 ORTHO05D004997 1.1e-09 67.0 107 41.1
Haze_22316 Corylus avellana HOM05D004288 ORTHO05D004997 1.1e-09 67.0 55 60.0
FvH4_2g33280 Fragaria vesca HOM05D004288 ORTHO05D004997 1.1e-09 67.0 116 39.7
FAN24G2538 Fragaria x ananassa HOM05D004288 ORTHO05D004997 1.1e-09 67.0 116 39.7
Cpa.g.sc21.102 Carica papaya HOM05D004288 ORTHO05D004997 1.5e-09 66.6 110 40.0
FAN15G0972 Fragaria x ananassa HOM05D004288 ORTHO05D004997 2.0e-09 66.2 116 40.5
CSS0005181 Camellia sinensis var. sinensis HOM05D004288 ORTHO05D004997 2.6e-09 65.9 108 38.9
COL.COLO4_28524 Corchorus olitorius HOM05D004288 ORTHO05D004997 2.6e-09 65.9 44 72.7
MBI16_g22811_MAGBIO Magnolia biondii HOM05D004288 ORTHO05D004997 3.3e-09 65.5 52 57.7
Phvul.001G026500 Phaseolus vulgaris HOM05D004288 ORTHO05D004997 4.4e-09 65.1 51 64.7
Rhsim07G0221200 Rhododendron simsii HOM05D004288 ORTHO05D004997 4.4e-09 65.1 61 50.8
Potri.014G017600 Populus trichocarpa HOM05D004288 ORTHO05D004997 5.7e-09 64.7 46 67.4
SalBow6G1935 Salvia bowleyana HOM05D004288 ORTHO05D004997 5.7e-09 64.7 42 64.3
SalBow8G0960 Salvia bowleyana HOM05D004288 ORTHO05D004997 5.7e-09 64.7 42 64.3
PGSC0003DMG400021529 Solanum tuberosum HOM05D004288 ORTHO05D004997 5.7e-09 64.7 53 56.6
CSS0041913 Camellia sinensis var. sinensis HOM05D004288 ORTHO05D004997 7.4e-09 64.3 111 38.7
CDE04G1463 Ceratophyllum demersum HOM05D004288 ORTHO05D004997 7.4e-09 64.3 48 60.4
CDE06G1799 Ceratophyllum demersum HOM05D004288 ORTHO05D004997 7.4e-09 64.3 48 60.4
FAN20G2816 Fragaria x ananassa HOM05D004288 ORTHO05D004997 7.4e-09 64.3 116 38.8
Hma1.2p1_0210F.1_g089620 Hydrangea macrophylla HOM05D004288 ORTHO05D004997 7.4e-09 64.3 84 44.0
Nitab4.5_0000569g0070 Nicotiana tabacum HOM05D004288 ORTHO05D004997 9.7e-09 63.9 41 65.9
TWI12G0116 Tripterygium wilfordii HOM05D004288 ORTHO05D004997 9.7e-09 63.9 48 62.5
Eucgr.F00116 Eucalyptus grandis HOM05D004288 ORTHO05D004997 1.7e-08 63.2 49 57.1
Migut.C00495 Erythranthe guttata HOM05D004288 ORTHO05D004997 2.2e-08 62.8 119 37.0
Nitab4.5_0014410g0020 Nicotiana tabacum HOM05D004288 ORTHO05D004997 2.2e-08 62.8 48 58.3
CAN.G107.3 Capsicum annuum HOM05D004288 ORTHO05D004997 2.8e-08 62.4 75 45.3
Lsat_1_v5_gn_4_130821 Lactuca sativa HOM05D004288 ORTHO05D004997 2.8e-08 62.4 48 60.4
Solyc12g088410.3 Solanum lycopersicum HOM05D004288 ORTHO05D004997 2.8e-08 62.4 50 58.0
Sopen12g030390 Solanum pennellii HOM05D004288 ORTHO05D004997 2.8e-08 62.4 50 58.0
TAR636G2516 Trochodendron aralioides HOM05D004288 ORTHO05D004997 2.8e-08 62.4 81 43.2
Aqoxy6G02704 Aquilegia oxysepala HOM05D004288 ORTHO05D004997 3.7e-08 62.0 59 52.5
Dinv39247 Davidia involucrata HOM05D004288 ORTHO05D004997 3.7e-08 62.0 111 41.4
Nitab4.5_0011511g0010 Nicotiana tabacum HOM05D004288 ORTHO05D004997 3.7e-08 62.0 52 53.8
PSO541G1266 Papaver somniferum HOM05D004288 ORTHO05D004997 3.7e-08 62.0 57 54.4
Phvul.001G026400 Phaseolus vulgaris HOM05D004288 ORTHO05D004997 3.7e-08 62.0 50 54.0
PGSC0003DMG401011559 Solanum tuberosum HOM05D004288 ORTHO05D004997 3.7e-08 62.0 50 56.0
Glyma.14G087800 Glycine max HOM05D004288 ORTHO05D004997 4.8e-08 61.6 57 57.9
SalBow7G4748 Salvia bowleyana HOM05D004288 ORTHO05D004997 6.3e-08 61.2 49 57.1
MSTRG.1030 Avicennia marina HOM05D004288 ORTHO05D004997 8.2e-08 60.8 57 52.6
Glyma.17G236500 Glycine max HOM05D004288 ORTHO05D004997 8.2e-08 60.8 51 62.7
QL12p037641 Quercus lobata HOM05D004288 ORTHO05D004997 8.2e-08 60.8 61 49.2
Cc10_g05620 Coffea canephora HOM05D004288 ORTHO05D004997 1.1e-07 60.5 51 54.9
Os03g0206201 Oryza sativa ssp. japonica HOM05D004288 ORTHO05D004997 1.4e-07 60.1 81 40.7
Peaxi162Scf00160g00120 Petunia axillaris HOM05D004288 ORTHO05D004997 1.4e-07 60.1 48 56.2
Oeu057368.1 Olea europaea HOM05D004288 ORTHO05D004997 1.8e-07 59.7 50 54.0
Peaxi162Scf00081g01322 Petunia axillaris HOM05D004288 ORTHO05D004997 1.8e-07 59.7 59 44.1
Solyc04g078010.4 Solanum lycopersicum HOM05D004288 ORTHO05D004997 1.8e-07 59.7 52 55.8
Sopen04g031610 Solanum pennellii HOM05D004288 ORTHO05D004997 1.8e-07 59.7 52 55.8
CANSAT54G1812 Cannabis sativa HOM05D004288 ORTHO05D004997 3.1e-07 58.9 37 67.6
Manes.18G045000 Manihot esculenta HOM05D004288 ORTHO05D004997 4.1e-07 58.5 42 66.7
ECA232G2356 Erigeron canadensis HOM05D004288 ORTHO05D004997 5.3e-07 58.2 108 38.9
ECA246G3669 Erigeron canadensis HOM05D002841 ORTHO05D003158 5.3e-07 58.2 91 37.4
GSVIVG01037855001 Vitis vinifera HOM05D004288 ORTHO05D004997 7.0e-07 57.8 49 53.1
Hund14391 Selenicereus undatus HOM05D004288 ORTHO05D004997 1.2e-06 57.0 50 54.0
VMungo0647G1736 Vigna mungo HOM05D004288 ORTHO05D004997 1.2e-06 57.0 55 50.9
PSO675G1665 Papaver somniferum HOM05D004288 ORTHO05D004997 1.5e-06 56.6 38 63.2
TPR.G3776 Trifolium pratense HOM05D004288 ORTHO05D004997 1.5e-06 56.6 85 40.0
DCAR_012811 Daucus carota HOM05D004288 ORTHO05D004997 2.0e-06 56.2 41 56.1
Nitab4.5_0000934g0110 Nicotiana tabacum HOM05D004288 ORTHO05D004997 2.0e-06 56.2 52 51.9
Sabra14G0011500 Salix brachista HOM05D004288 ORTHO05D004997 2.0e-06 56.2 81 43.2
TWI56G0562 Tripterygium wilfordii HOM05D004288 ORTHO05D004997 2.0e-06 56.2 119 38.7
HanXRQChr11g0341661 Helianthus annuus HOM05D004288 ORTHO05D004997 2.6e-06 55.8 50 56.0
SGA_v2.0_scaffold14G06935 Striga asiatica HOM05D004288 ORTHO05D004997 2.6e-06 55.8 49 57.1
Carub.0006s0080 Capsella rubella HOM05D004288 ORTHO05D004997 4.5e-06 55.1 60 53.3
DCAR_008852 Daucus carota HOM05D004288 ORTHO05D004997 5.9e-06 54.7 44 59.1
Ah.05g167180 Amaranthus hybridus HOM05D004288 ORTHO05D004997 7.7e-06 54.3 116 37.1
Lsat_1_v5_gn_6_112441 Lactuca sativa HOM05D004288 ORTHO05D004997 7.7e-06 54.3 41 58.5
TPR.G11815 Trifolium pratense HOM05D004288 ORTHO05D004997 7.7e-06 54.3 117 35.9


User provided reference genes

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