Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0026677 Sechium edule HOM05D000283 ORTHO05D006673 0.0e+00 1914.4 982 100.0
ClCG09G020330 Citrullus lanatus HOM05D000283 ORTHO05D006673 0.0e+00 1334.7 1023 72.4
Sed0006338 Sechium edule HOM05D000283 ORTHO05D006673 0.0e+00 1270.8 1012 70.8
CsaV3_5G026060 Cucumis sativus L. HOM05D000283 ORTHO05D006673 0.0e+00 1181.0 1037 65.7
MELO3C025491.2 Cucumis melo HOM05D000283 ORTHO05D006673 0.0e+00 1152.5 1102 61.4
MELO3C025488.2 Cucumis melo HOM05D000283 ORTHO05D006673 0.0e+00 1149.8 1016 64.6
MELO3C025492.2 Cucumis melo HOM05D000283 ORTHO05D006673 2.3e-302 1042.3 1047 59.1
CsaV3_5G026070 Cucumis sativus L. HOM05D000283 ORTHO05D006673 9.3e-179 631.7 686 56.4
CsaV3_5G026100 Cucumis sativus L. HOM05D000283 ORTHO05D006673 1.1e-155 555.1 384 72.9
ClCG09G020310 Citrullus lanatus HOM05D000283 ORTHO05D006673 6.5e-132 476.1 1350 33.1
QL08p057512 Quercus lobata HOM05D000283 ORTHO05D006673 4.9e-87 327.0 1307 28.5
Cfa001559 Carpinus fangiana HOM05D000283 ORTHO05D005391 6.6e-84 316.6 696 37.5
CiPaw.01G279600 Carya illinoinensis HOM05D000283 ORTHO05D006673 2.4e-81 308.1 1325 29.0
CiPaw.02G178500 Carya illinoinensis HOM05D000283 ORTHO05D006673 2.4e-78 298.1 834 33.3
Dinv25941 Davidia involucrata HOM05D000283 ORTHO05D004861 3.3e-75 287.7 1326 27.1
arahy.Tifrunner.gnm1.ann1.SA4FWZ Arachis hypogaea HOM05D000283 ORTHO05D006673 6.0e-69 266.9 789 33.6
arahy.Tifrunner.gnm1.ann1.U4C8JV Arachis hypogaea HOM05D000283 ORTHO05D006673 2.5e-67 261.5 789 33.1
CSS0006513 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D006673 8.1e-66 256.5 682 36.1
CSS0040218 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D006673 2.4e-65 255.0 682 35.9
COL.COLO4_29238 Corchorus olitorius HOM05D000283 ORTHO05D006673 2.4e-65 255.0 731 33.0
Duzib114G0075 Durio zibethinus HOM05D000283 ORTHO05D006673 4.0e-65 254.2 887 31.6
Ciclev10033332m.g Citrus clementina HOM05D000283 ORTHO05D006673 2.0e-64 251.9 739 33.7
Thecc.10G063100 Theobroma cacao HOM05D000283 ORTHO05D006673 7.6e-64 250.0 800 32.9
Manes.10G039300 Manihot esculenta HOM05D000283 ORTHO05D006673 9.9e-64 249.6 827 32.5
Gohir.A05G352800 Gossypium hirsutum HOM05D000283 ORTHO05D006673 2.9e-63 248.1 716 34.4
Gorai.012G066900 Gossypium raimondii HOM05D000283 ORTHO05D006673 3.2e-62 244.6 729 34.4
VMungo0720G0439 Vigna mungo HOM05D000283 ORTHO05D006673 3.2e-62 244.6 669 34.7
Atru.chr12.593 Acer truncatum HOM05D000283 ORTHO05D006673 1.0e-60 239.6 695 33.7
Manes.10G039200 Manihot esculenta HOM05D000283 ORTHO05D006673 1.8e-60 238.8 670 36.9
Phvul.007G007900 Phaseolus vulgaris HOM05D000283 ORTHO05D006673 8.7e-60 236.5 670 34.8
Glyma.20G242400 Glycine max HOM05D000283 ORTHO05D006673 3.3e-59 234.6 738 32.9
MD07G1184600 Malus domestica HOM05D000283 ORTHO05D006673 1.6e-58 232.3 710 33.8
RcHm_v2.0_Chr1g0365001 Rosa chinensis HOM05D000283 ORTHO05D006673 2.8e-58 231.5 670 34.8
TWI38G0559 Tripterygium wilfordii HOM05D000283 ORTHO05D006673 2.8e-58 231.5 744 33.5
Lalb_Chr02g0143851 Lupinus albus HOM05D000283 ORTHO05D006673 8.2e-58 229.9 758 32.5
Medtr1g115950 Medicago truncatula HOM05D000283 ORTHO05D006673 8.2e-58 229.9 753 32.8
Gohir.D04G060201 Gossypium hirsutum HOM05D000283 ORTHO05D006673 2.4e-57 228.4 714 33.5
Glyma.10G292400 Glycine max HOM05D000283 ORTHO05D006673 5.3e-57 227.3 735 33.9
Lj5g0015824 Lotus japonicus HOM05D000283 ORTHO05D006673 5.3e-57 227.3 755 32.5
Psat6g238520 Pisum sativum HOM05D000283 ORTHO05D006673 1.5e-56 225.7 781 32.4
TPR.G10427 Trifolium pratense HOM05D000283 ORTHO05D006673 1.9e-54 218.8 765 32.0
Ca_11324_v3 Cicer arietinum L. HOM05D000283 ORTHO05D006673 2.1e-53 215.3 713 33.0
MD01G1117200 Malus domestica HOM05D000283 ORTHO05D006673 2.7e-53 214.9 664 34.6
Prupe.2G224500 Prunus persica HOM05D000283 ORTHO05D006673 3.5e-53 214.5 704 33.4
Lalb_Chr02g0143831 Lupinus albus HOM05D000283 ORTHO05D006673 4.8e-50 204.1 820 31.0
Eucgr.G02778 Eucalyptus grandis HOM05D000283 ORTHO05D006673 2.4e-49 201.8 679 34.2
FvH4_7g20760 Fragaria vesca HOM05D000283 ORTHO05D006673 5.9e-48 197.2 751 31.3
FAN06G0550 Fragaria x ananassa HOM05D000283 ORTHO05D006673 1.1e-46 193.0 751 31.3
Hma1.2p1_0348F.1_g131680 Hydrangea macrophylla HOM05D000283 ORTHO05D006673 1.4e-46 192.6 821 30.5
Sabra10G0165500 Salix brachista HOM05D000283 ORTHO05D006673 1.4e-46 192.6 674 33.5
FAN06G2682 Fragaria x ananassa HOM05D000283 ORTHO05D006673 1.9e-46 192.2 750 31.1
FAN10G3387 Fragaria x ananassa HOM05D000283 ORTHO05D005391 1.9e-46 192.2 833 30.1
TAR636G0162 Trochodendron aralioides HOM05D000283 ORTHO05D006673 4.2e-46 191.0 727 32.6
FAN03G1488 Fragaria x ananassa HOM05D000283 ORTHO05D006673 9.4e-46 189.9 721 31.6
Potri.010G213800 Populus trichocarpa HOM05D000283 ORTHO05D006673 1.2e-45 189.5 727 30.9
CANSAT56G3782 Cannabis sativa HOM05D000283 ORTHO05D006673 2.1e-45 188.7 726 30.6
Peaxi162Scf00135g00027 Petunia axillaris HOM05D000283 ORTHO05D006673 2.1e-45 188.7 672 32.1
Nn2g11490 Nelumbo nucifera HOM05D000283 ORTHO05D006673 7.9e-45 186.8 667 31.3
TAR633G0056 Trochodendron aralioides HOM05D000283 ORTHO05D006673 1.0e-44 186.4 694 32.1
Potri.008G047600 Populus trichocarpa HOM05D000283 ORTHO05D006673 3.1e-41 174.9 719 30.6
Cc02_g08660 Coffea canephora HOM05D000283 ORTHO05D006673 9.1e-41 173.3 646 33.0
Duzib106G1116 Durio zibethinus HOM05D000283 ORTHO05D006673 1.2e-40 172.9 727 28.9
SalBow6G2235 Salvia bowleyana HOM05D000283 ORTHO05D006673 3.4e-40 171.4 674 31.3
Sabra08G0033700 Salix brachista HOM05D000283 ORTHO05D006673 1.3e-39 169.5 691 31.3
Aqoxy2G01934 Aquilegia oxysepala HOM05D000283 ORTHO05D006673 2.2e-39 168.7 721 30.7
Rhsim09G0155800 Rhododendron simsii HOM05D000283 ORTHO05D006673 3.8e-39 167.9 894 28.5
Cpa.g.sc1.302 Carica papaya HOM05D000283 ORTHO05D006673 7.4e-35 153.7 233 43.8
Lj8A92T85 Lonicera japonica HOM05D000283 ORTHO05D006673 7.4e-35 153.7 851 27.7
MSTRG.8954 Avicennia marina HOM05D000283 ORTHO05D006673 1.3e-34 152.9 664 29.4
Nitab4.5_0006737g0060 Nicotiana tabacum HOM05D000283 ORTHO05D006673 1.7e-34 152.5 674 29.7
Nitab4.5_0007221g0010 Nicotiana tabacum HOM05D000283 ORTHO05D006673 4.8e-34 151.0 661 29.7
GSVIVG01032629001 Vitis vinifera HOM05D000283 ORTHO05D006673 4.8e-34 151.0 476 33.0
PSO782G0271 Papaver somniferum HOM05D000283 ORTHO05D006673 6.5e-31 140.6 511 33.7
Migut.F00680 Erythranthe guttata HOM05D000283 ORTHO05D006673 1.6e-29 136.0 676 30.0
MSTRG.27328 Avicennia marina HOM05D000283 ORTHO05D006673 3.9e-28 131.3 691 28.7
PSO478G2008 Papaver somniferum HOM05D000283 ORTHO05D006673 1.7e-26 125.9 694 30.0
PGSC0003DMG400011491 Solanum tuberosum HOM05D000283 ORTHO05D006673 2.8e-26 125.2 653 28.9
THA.LOC104799366 Tarenaya hassleriana HOM05D000283 ORTHO05D006673 6.3e-26 124.0 822 27.7
Sopen04g005360 Solanum pennellii HOM05D000283 ORTHO05D006673 4.4e-19 101.3 663 27.9
PGSC0003DMG400011472 Solanum tuberosum HOM05D000283 ORTHO05D006673 5.7e-19 100.9 318 32.1
PGSC0003DMG400011483 Solanum tuberosum HOM05D000283 ORTHO05D006673 2.2e-18 99.0 745 27.4
Solyc04g010185.1 Solanum lycopersicum HOM05D000283 ORTHO05D006673 1.1e-17 96.7 656 27.6
THA.LOC104809887 Tarenaya hassleriana HOM05D000283 ORTHO05D006673 7.0e-17 94.0 655 27.8
C02p06270 Brassica napus HOM05D010678 ORTHO05D006673 3.5e-16 91.7 518 28.4
BolC2t06571H Brassica oleracea HOM05D010678 ORTHO05D006673 7.7e-16 90.5 371 31.0
DCAR_010662 Daucus carota HOM05D000283 ORTHO05D006673 7.7e-16 90.5 518 28.0
Sp6g30440 Schrenkiella parvula HOM05D010678 ORTHO05D006673 6.5e-15 87.4 483 28.8
BcaNung01899 Brassica carinata HOM05D010678 ORTHO05D006673 8.5e-15 87.0 398 29.9
BraA02t05176Z Brassica rapa HOM05D010678 ORTHO05D006673 2.5e-14 85.5 475 28.2
A02p02040 Brassica napus HOM05D010678 ORTHO05D006673 5.5e-14 84.3 477 29.8
Oeu025162.3 Olea europaea HOM05D000283 ORTHO05D006673 2.1e-13 82.4 640 25.6
AL6G24200 Arabidopsis lyrata HOM05D010678 ORTHO05D006673 2.7e-13 82.0 531 27.7
Thhalv10012490m.g Eutrema salsugineum HOM05D010678 ORTHO05D006673 1.0e-12 80.1 482 27.6
Sopen04g005270 Solanum pennellii HOM05D000283 ORTHO05D006673 7.5e-11 73.9 648 26.5
BcaNung01143 Brassica carinata HOM05D010678 ORTHO05D006673 2.2e-10 72.4 793 25.1
Sopen04g005310 Solanum pennellii HOM05D000283 ORTHO05D006673 3.7e-10 71.6 406 29.1
CDE07G1705 Ceratophyllum demersum HOM05D000283 ORTHO05D006673 9.1e-09 67.0 761 25.1
DCAR_020267 Daucus carota HOM05D000457 ORTHO05D000560 1.2e-08 66.6 554 27.1
Sopen04g005330 Solanum pennellii HOM05D000283 ORTHO05D006673 1.6e-08 66.2 370 28.4
AT5G13590 Arabidopsis thaliana HOM05D010678 ORTHO05D006673 1.7e-07 62.8 569 26.4
MBI04_g35056_MAGBIO Magnolia biondii HOM05D006627 ORTHO05D007753 3.3e-06 58.5 407 28.5
Haze_16971 Corylus avellana HOM05D000283 ORTHO05D006673 9.5e-06 57.0 396 26.8
Sopen03g020140 Solanum pennellii HOM05D000002 ORTHO05D000001 9.5e-06 57.0 335 26.6


User provided reference genes

Program Settings