Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0026591 Sechium edule HOM05D000520 ORTHO05D000399 5.8e-33 143.7 74 100.0
MELO3C019982.2 Cucumis melo HOM05D000520 ORTHO05D000399 1.5e-28 129.0 73 86.3
CsaV3_6G002070 Cucumis sativus L. HOM05D000520 ORTHO05D000399 3.6e-27 124.4 70 88.6
ClCG11G005930 Citrullus lanatus HOM05D000520 ORTHO05D000399 4.8e-27 124.0 72 87.5
FvH4_7g25401 Fragaria vesca HOM05D000520 ORTHO05D000399 7.6e-25 116.7 72 86.1
FAN10G1782 Fragaria x ananassa HOM05D000520 ORTHO05D000399 7.6e-25 116.7 72 86.1
Manes.07G136400 Manihot esculenta HOM05D000520 ORTHO05D000399 1.3e-24 115.9 73 78.1
RcHm_v2.0_Chr1g0371361 Rosa chinensis HOM05D000520 ORTHO05D000399 1.7e-24 115.5 72 84.7
TPR.G35647 Trifolium pratense HOM05D000520 ORTHO05D000399 2.9e-24 114.8 70 84.3
Glyma.11G234100 Glycine max HOM05D000520 ORTHO05D000399 6.4e-24 113.6 73 79.5
QL08p064089 Quercus lobata HOM05D000520 ORTHO05D000399 6.4e-24 113.6 73 76.7
QL08p064120 Quercus lobata HOM05D000520 ORTHO05D000399 6.4e-24 113.6 73 76.7
Phvul.008G219600 Phaseolus vulgaris HOM05D000520 ORTHO05D000399 8.4e-24 113.2 73 78.1
FAN03G0385 Fragaria x ananassa HOM05D000520 ORTHO05D000399 1.9e-23 112.1 69 87.0
Phvul.001G247400 Phaseolus vulgaris HOM05D000520 ORTHO05D000399 1.9e-23 112.1 73 75.3
CiPaw.01G303000 Carya illinoinensis HOM05D000520 ORTHO05D000399 2.4e-23 111.7 72 79.2
Haze_17306 Corylus avellana HOM05D000520 ORTHO05D000399 4.2e-23 110.9 73 75.3
FAN01G3104 Fragaria x ananassa HOM05D000007 ORTHO05D000399 4.2e-23 110.9 69 85.5
LjContig00357g0023458 Lotus japonicus HOM05D000520 ORTHO05D000399 4.2e-23 110.9 68 82.4
arahy.Tifrunner.gnm1.ann1.110NX6 Arachis hypogaea HOM05D000520 ORTHO05D000399 5.4e-23 110.5 70 78.6
arahy.Tifrunner.gnm1.ann1.WNP8KX Arachis hypogaea HOM05D000520 ORTHO05D000399 5.4e-23 110.5 70 78.6
Dinv10568 Davidia involucrata HOM05D000520 ORTHO05D000399 7.1e-23 110.2 68 82.4
Thhalv10015175m.g Eutrema salsugineum HOM05D000520 ORTHO05D000399 7.1e-23 110.2 70 77.1
COL.COLO4_25813 Corchorus olitorius HOM05D000520 ORTHO05D000399 9.3e-23 109.8 68 80.9
Lalb_Chr17g0347011 Lupinus albus HOM05D000520 ORTHO05D000399 9.3e-23 109.8 68 79.4
Duzib106G1944 Durio zibethinus HOM05D000520 ORTHO05D000399 1.2e-22 109.4 70 80.0
Sp6g37460 Schrenkiella parvula HOM05D000520 ORTHO05D000399 1.2e-22 109.4 70 77.1
Ciclev10033238m.g Citrus clementina HOM05D000520 ORTHO05D000399 1.6e-22 109.0 71 76.1
Gohir.D13G014600 Gossypium hirsutum HOM05D000520 ORTHO05D000399 1.6e-22 109.0 70 78.6
Gorai.013G015800 Gossypium raimondii HOM05D000520 ORTHO05D000399 1.6e-22 109.0 70 78.6
AL6G15260 Arabidopsis lyrata HOM05D000520 ORTHO05D000399 2.1e-22 108.6 70 77.1
Gohir.A13G013500 Gossypium hirsutum HOM05D000520 ORTHO05D000399 2.1e-22 108.6 70 78.6
A10p30840 Brassica napus HOM05D000520 ORTHO05D000399 2.7e-22 108.2 73 75.3
Carub.0006s0429 Capsella rubella HOM05D000520 ORTHO05D000399 2.7e-22 108.2 73 76.7
Lj6g0010443 Lotus japonicus HOM05D000520 ORTHO05D000399 3.5e-22 107.8 68 79.4
Medtr3g072000 Medicago truncatula HOM05D000520 ORTHO05D000399 3.5e-22 107.8 68 80.9
Psat5g125920 Pisum sativum HOM05D000520 ORTHO05D000399 3.5e-22 107.8 72 76.4
TWI53G1245 Tripterygium wilfordii HOM05D000520 ORTHO05D000399 4.6e-22 107.5 71 74.6
Glyma.02G260700 Glycine max HOM05D000520 ORTHO05D000399 6.0e-22 107.1 68 77.9
AT5G05365 Arabidopsis thaliana HOM05D000520 ORTHO05D000399 7.8e-22 106.7 70 75.7
CANSAT56G0564 Cannabis sativa HOM05D000520 ORTHO05D000399 7.8e-22 106.7 70 77.1
MD01G1160400 Malus domestica HOM05D000520 ORTHO05D000399 7.8e-22 106.7 71 77.5
Prupe.2G258300 Prunus persica HOM05D000520 ORTHO05D000399 7.8e-22 106.7 68 77.9
BcaC06g32249 Brassica carinata HOM05D000520 ORTHO05D000399 1.0e-21 106.3 73 74.0
FAN06G2196 Fragaria x ananassa HOM05D000007 ORTHO05D000399 1.0e-21 106.3 70 84.3
Glyma.18G022900 Glycine max HOM05D000520 ORTHO05D000399 1.0e-21 106.3 73 75.3
Potri.010G182700 Populus trichocarpa HOM05D000520 ORTHO05D000399 1.0e-21 106.3 70 74.3
Thecc.10G008500 Theobroma cacao HOM05D000520 ORTHO05D000399 1.0e-21 106.3 67 80.6
GSVIVG01032731001 Vitis vinifera HOM05D000520 ORTHO05D000399 1.0e-21 106.3 69 82.6
Aa31LG11G6450 Aethionema arabicum HOM05D000520 ORTHO05D000399 1.3e-21 105.9 67 77.6
Ca_06010_v3 Cicer arietinum L. HOM05D000520 ORTHO05D000399 1.3e-21 105.9 68 79.4
Lalb_Chr04g0250351 Lupinus albus HOM05D000520 ORTHO05D000399 1.7e-21 105.5 68 77.9
Lalb_Chr11g0075131 Lupinus albus HOM05D000520 ORTHO05D000399 1.7e-21 105.5 73 72.6
Medtr5g083710 Medicago truncatula HOM05D000520 ORTHO05D000399 1.7e-21 105.5 68 79.4
arahy.Tifrunner.gnm1.ann1.E0TNI0 Arachis hypogaea HOM05D000127 ORTHO05D000243 2.3e-21 105.1 70 75.7
Migut.F00616 Erythranthe guttata HOM05D000520 ORTHO05D000399 3.0e-21 104.8 71 76.1
Nitab4.5_0001291g0070 Nicotiana tabacum HOM05D000520 ORTHO05D000399 3.9e-21 104.4 67 80.6
Nitab4.5_0002854g0110 Nicotiana tabacum HOM05D000520 ORTHO05D000399 3.9e-21 104.4 67 80.6
PGSC0003DMG400023960 Solanum tuberosum HOM05D000520 ORTHO05D000399 3.9e-21 104.4 67 80.6
VMungo1383G0377 Vigna mungo HOM05D002596 ORTHO05D000399 3.9e-21 104.4 68 76.5
BraA10t45126Z Brassica rapa HOM05D000520 ORTHO05D000399 5.1e-21 104.0 65 78.5
Actinidia00652 Actinidia chinensis HOM05D000520 ORTHO05D000399 6.6e-21 103.6 68 79.4
MSTRG.27294 Avicennia marina HOM05D000520 ORTHO05D000399 6.6e-21 103.6 68 77.9
C09p71340 Brassica napus HOM05D000520 ORTHO05D000399 8.7e-21 103.2 70 75.7
Cpa.g.sc19.110 Carica papaya HOM05D000520 ORTHO05D000399 8.7e-21 103.2 68 79.4
THA.LOC104826837 Tarenaya hassleriana HOM05D000520 ORTHO05D000399 8.7e-21 103.2 67 73.1
TPR.G20212 Trifolium pratense HOM05D000520 ORTHO05D000399 1.1e-20 102.8 68 76.5
BolC9t59896H Brassica oleracea HOM05D000520 ORTHO05D000399 1.5e-20 102.4 70 74.3
Solyc06g050710.4 Solanum lycopersicum HOM05D000520 ORTHO05D000399 1.5e-20 102.4 67 79.1
Sopen06g016270 Solanum pennellii HOM05D000520 ORTHO05D000399 1.5e-20 102.4 67 79.1
Cc02_g05820 Coffea canephora HOM05D000520 ORTHO05D000399 2.5e-20 101.7 71 71.8
Nn2g13284 Nelumbo nucifera HOM05D000520 ORTHO05D000399 2.5e-20 101.7 67 74.6
Sc14g0005550 Simmondsia chinensis HOM05D000520 ORTHO05D000399 2.5e-20 101.7 67 76.1
CAN.G865.11 Capsicum annuum HOM05D000520 ORTHO05D000399 3.3e-20 101.3 64 82.8
Hund13522 Selenicereus undatus HOM05D000520 ORTHO05D000399 5.6e-20 100.5 71 70.4
CARHR207870 Cardamine hirsuta HOM05D000520 ORTHO05D000399 7.3e-20 100.1 59 88.1
HanXRQChr15g0493871 Helianthus annuus HOM05D000520 ORTHO05D000399 7.3e-20 100.1 68 75.0
Peaxi162Scf00284g00228 Petunia axillaris HOM05D000520 ORTHO05D000399 7.3e-20 100.1 70 74.3
CSS0009158 Camellia sinensis var. sinensis HOM05D000520 ORTHO05D000399 9.6e-20 99.8 68 75.0
CSS0043309 Camellia sinensis var. sinensis HOM05D000520 ORTHO05D000399 9.6e-20 99.8 68 75.0
arahy.Tifrunner.gnm1.ann1.46LX0D Arachis hypogaea HOM05D000520 ORTHO05D000399 1.6e-19 99.0 67 74.6
HanXRQChr08g0222621 Helianthus annuus HOM05D000520 ORTHO05D000399 1.6e-19 99.0 68 75.0
SalBow3G1779 Salvia bowleyana HOM05D000520 ORTHO05D000399 1.6e-19 99.0 72 69.4
Eucgr.G03105 Eucalyptus grandis HOM05D000520 ORTHO05D000399 2.1e-19 98.6 71 69.0
Psat2g029200 Pisum sativum HOM05D000520 ORTHO05D000399 4.8e-19 97.4 65 76.9
AUR62022965 Chenopodium quinoa HOM05D000520 ORTHO05D000399 6.2e-19 97.1 64 75.0
EL10Ac2g04916 Beta vulgaris HOM05D000520 ORTHO05D000399 8.1e-19 96.7 64 75.0
ECA232G0418 Erigeron canadensis HOM05D000003 ORTHO05D000004 1.8e-18 95.5 68 70.6
Lsat_1_v5_gn_8_13301 Lactuca sativa HOM05D000520 ORTHO05D000399 2.4e-18 95.1 68 70.6
PSO339G3969 Papaver somniferum HOM05D000520 ORTHO05D000399 2.4e-18 95.1 72 66.7
DCAR_024797 Daucus carota HOM05D001699 ORTHO05D000399 3.1e-18 94.7 68 67.6
PSO384G1077 Papaver somniferum HOM05D000520 ORTHO05D000399 5.3e-18 94.0 72 65.3
PGR142G2231 Punica granatum HOM05D000520 ORTHO05D000399 3.4e-17 91.3 74 64.9
CDE04G2050 Ceratophyllum demersum HOM05D007559 ORTHO05D009642 1.1e-15 86.3 68 57.4
MBI15_g19958_MAGBIO Magnolia biondii HOM05D000520 ORTHO05D000399 1.9e-15 85.5 67 64.2
ATR0594G059 Amborella trichopoda HOM05D004253 ORTHO05D005013 3.2e-15 84.7 64 64.1
ECA233G3958 Erigeron canadensis HOM05D000490 ORTHO05D001398 4.2e-15 84.3 52 82.7
MBI15_g03641_MAGBIO Magnolia biondii HOM05D004253 ORTHO05D005013 7.1e-15 83.6 67 62.7
Os01g0826000 Oryza sativa ssp. japonica HOM05D000520 ORTHO05D000399 2.7e-14 81.6 67 59.7
Zm00001eb368660 Zea mays HOM05D000520 ORTHO05D000399 7.9e-14 80.1 67 59.7
Atru.chr12.134 Acer truncatum HOM05D000520 ORTHO05D000399 3.4e-09 64.7 44 72.7
TAR623G0897 Trochodendron aralioides HOM05D002596 ORTHO05D002851 1.3e-08 62.8 51 60.8
Dinv19722 Davidia involucrata HOM05D000520 ORTHO05D000399 2.9e-08 61.6 61 50.8
SMO118G0153 Selaginella moellendorffii HOM05D000520 ORTHO05D000399 2.9e-08 61.6 65 40.0
Dinv33031 Davidia involucrata HOM05D000520 ORTHO05D000399 6.5e-08 60.5 61 50.8
ATR0796G208 Amborella trichopoda HOM05D000520 ORTHO05D000399 1.9e-07 58.9 68 45.6
Aqoxy4G02185 Aquilegia oxysepala HOM05D000520 ORTHO05D000399 3.2e-07 58.2 50 56.0
Actinidia21058 Actinidia chinensis HOM05D000520 ORTHO05D000399 4.2e-07 57.8 61 49.2
FvH4_2g25240 Fragaria vesca HOM05D000520 ORTHO05D000399 4.2e-07 57.8 61 47.5
Dinv37048 Davidia involucrata HOM05D000262 ORTHO05D000300 5.5e-07 57.4 65 40.0
Nn3g21431 Nelumbo nucifera HOM05D000520 ORTHO05D000399 5.5e-07 57.4 61 47.5
Nn4g25875 Nelumbo nucifera HOM05D000520 ORTHO05D000399 5.5e-07 57.4 61 44.3
CSS0021736 Camellia sinensis var. sinensis HOM05D000520 ORTHO05D000399 9.3e-07 56.6 61 49.2
Lsat_1_v5_gn_9_60620 Lactuca sativa HOM05D009001 ORTHO05D000399 1.6e-06 55.8 58 50.0
CiPaw.01G149000 Carya illinoinensis HOM05D000520 ORTHO05D000399 2.1e-06 55.5 66 47.0
Phvul.009G247600 Phaseolus vulgaris HOM05D000520 ORTHO05D000399 2.1e-06 55.5 65 44.6
GSVIVG01017753001 Vitis vinifera HOM05D000520 ORTHO05D000399 2.1e-06 55.5 61 45.9
MSTRG.24755 Avicennia marina HOM05D000520 ORTHO05D000399 2.7e-06 55.1 67 41.8
MD11G1304000 Malus domestica HOM05D000520 ORTHO05D000399 2.7e-06 55.1 61 45.9
PGR142G1407 Punica granatum HOM05D000262 ORTHO05D000300 2.7e-06 55.1 65 43.1
Zm00001eb394840 Zea mays HOM05D000520 ORTHO05D037140 2.7e-06 55.1 68 39.7
arahy.Tifrunner.gnm1.ann1.H24US0 Arachis hypogaea HOM05D000520 ORTHO05D000399 3.5e-06 54.7 68 41.2
QL06p008798 Quercus lobata HOM05D000520 ORTHO05D000399 3.5e-06 54.7 61 49.2
Hund06774 Selenicereus undatus HOM05D000999 ORTHO05D000399 3.5e-06 54.7 68 36.8
SEGI_07017 Sequoiadendron giganteum HOM05D000520 ORTHO05D000399 3.5e-06 54.7 63 42.9
Solyc02g076880.4 Solanum lycopersicum HOM05D000262 ORTHO05D000300 3.5e-06 54.7 64 39.1
Sopen02g021780 Solanum pennellii HOM05D000262 ORTHO05D000300 3.5e-06 54.7 64 39.1
vmacro15275 Vaccinium macrocarpon HOM05D000262 ORTHO05D009865 3.5e-06 54.7 56 50.0
Actinidia40258 Actinidia chinensis HOM05D000520 ORTHO05D000399 4.6e-06 54.3 61 45.9
Aqoxy5G00713 Aquilegia oxysepala HOM05D000520 ORTHO05D000399 4.6e-06 54.3 61 47.5
Nn1g09133 Nelumbo nucifera HOM05D000262 ORTHO05D000300 4.6e-06 54.3 64 39.1
SMO347G0518 Selaginella moellendorffii HOM05D000999 ORTHO05D000399 4.6e-06 54.3 59 42.4
THA.LOC104814252 Tarenaya hassleriana HOM05D000262 ORTHO05D000300 4.6e-06 54.3 68 35.3
TPR.G13851 Trifolium pratense HOM05D000520 ORTHO05D000399 4.6e-06 54.3 61 45.9
Carub.0007s2919 Capsella rubella HOM05D012302 ORTHO05D016597 6.0e-06 53.9 55 38.2
MD03G1023000 Malus domestica HOM05D000262 ORTHO05D000300 6.0e-06 53.9 65 40.0
Potri.019G107500 Populus trichocarpa HOM05D000262 ORTHO05D000300 6.0e-06 53.9 69 34.8
Prupe.8G257200 Prunus persica HOM05D000520 ORTHO05D000399 6.0e-06 53.9 61 47.5
CiPaw.10G044300 Carya illinoinensis HOM05D000262 ORTHO05D000300 7.9e-06 53.5 65 38.5
CDE11G0338 Ceratophyllum demersum HOM05D000520 ORTHO05D000399 7.9e-06 53.5 61 45.9
MELO3C021404.2 Cucumis melo HOM05D000520 ORTHO05D000399 7.9e-06 53.5 67 41.8
Dinv29767 Davidia involucrata HOM05D000520 ORTHO05D000399 7.9e-06 53.5 61 45.9
Lalb_Chr02g0148151 Lupinus albus HOM05D000520 ORTHO05D000399 7.9e-06 53.5 68 39.7
MBI04_g07884_MAGBIO Magnolia biondii HOM05D000262 ORTHO05D000300 7.9e-06 53.5 65 38.5
Medtr2g436830 Medicago truncatula HOM05D000520 ORTHO05D000399 7.9e-06 53.5 61 45.9
Psat1g153560 Pisum sativum HOM05D000520 ORTHO05D000399 7.9e-06 53.5 61 44.3
Potri.019G106500 Populus trichocarpa HOM05D000262 ORTHO05D000300 7.9e-06 53.5 69 33.3
Prupe.7G025000 Prunus persica HOM05D000262 ORTHO05D000300 7.9e-06 53.5 65 40.0
QL07p015611 Quercus lobata HOM05D000262 ORTHO05D000300 7.9e-06 53.5 65 38.5
SMO164G0017 Selaginella moellendorffii HOM05D000262 ORTHO05D000399 7.9e-06 53.5 68 36.8
SEGI_37233 Sequoiadendron giganteum HOM05D000262 ORTHO05D000399 7.9e-06 53.5 67 37.3
TWI12G0219 Tripterygium wilfordii HOM05D000520 ORTHO05D000399 7.9e-06 53.5 61 45.9
TAR636G3055 Trochodendron aralioides HOM05D000520 ORTHO05D000399 7.9e-06 53.5 61 44.3
Zm00001eb032340 Zea mays HOM05D000999 ORTHO05D000399 7.9e-06 53.5 72 36.1


User provided reference genes

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