Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0026560 Sechium edule HOM05D005723 ORTHO05D005968 1.1e-92 343.2 159 100.0
Sed0013306 Sechium edule HOM05D005723 ORTHO05D005968 1.6e-64 249.6 204 63.7
MELO3C009621.2 Cucumis melo HOM05D005723 ORTHO05D005968 3.0e-63 245.4 204 62.7
Lalb_Chr18g0047891 Lupinus albus HOM05D005723 ORTHO05D005968 1.8e-55 219.5 195 56.4
Phvul.001G142700 Phaseolus vulgaris HOM05D005723 ORTHO05D005968 8.9e-55 217.2 196 55.6
Cfa020161 Carpinus fangiana HOM05D005723 ORTHO05D005968 1.2e-54 216.9 193 58.5
Phvul.007G260200 Phaseolus vulgaris HOM05D005723 ORTHO05D005968 1.2e-54 216.9 207 55.6
COL.COLO4_33978 Corchorus olitorius HOM05D005723 ORTHO05D005968 3.4e-54 215.3 205 55.1
Glyma.09G111000 Glycine max HOM05D005723 ORTHO05D005968 4.4e-54 214.9 197 56.9
Glyma.19G148100 Glycine max HOM05D005723 ORTHO05D005968 7.5e-54 214.2 195 55.4
Sabra06G0148000 Salix brachista HOM05D005723 ORTHO05D005968 1.3e-53 213.4 209 54.1
Manes.08G043200 Manihot esculenta HOM05D005723 ORTHO05D005968 1.7e-53 213.0 193 57.0
ClCG10G017570 Citrullus lanatus HOM05D005723 ORTHO05D005968 2.2e-53 212.6 204 58.3
Potri.006G192800 Populus trichocarpa HOM05D005723 ORTHO05D005968 2.2e-53 212.6 205 54.6
VMungo1383G0807 Vigna mungo HOM05D005723 ORTHO05D005968 2.2e-53 212.6 194 55.2
VMungo0720G2417 Vigna mungo HOM05D005723 ORTHO05D005968 2.9e-53 212.2 207 55.6
CiPaw.09G030000 Carya illinoinensis HOM05D005723 ORTHO05D005968 3.7e-53 211.8 210 53.8
TPR.G18229 Trifolium pratense HOM05D005723 ORTHO05D005968 3.7e-53 211.8 206 53.9
TWI53G1132 Tripterygium wilfordii HOM05D005723 ORTHO05D005968 4.9e-53 211.5 200 55.0
Medtr7g093280 Medicago truncatula HOM05D005723 ORTHO05D005968 6.3e-53 211.1 206 52.9
Psat3g068400 Pisum sativum HOM05D005723 ORTHO05D005968 8.3e-53 210.7 206 53.9
CANSAT64G2568 Cannabis sativa HOM05D005723 ORTHO05D005968 1.4e-52 209.9 193 55.4
Gohir.A09G128200 Gossypium hirsutum HOM05D005723 ORTHO05D005968 1.4e-52 209.9 214 53.3
Ca_08526_v3 Cicer arietinum L. HOM05D005723 ORTHO05D005968 2.4e-52 209.1 206 52.9
Lj1g0008741 Lotus japonicus HOM05D005723 ORTHO05D005968 3.2e-52 208.8 208 54.3
Atru.chr8.1119 Acer truncatum HOM05D005723 ORTHO05D005968 4.1e-52 208.4 204 52.0
Potri.016G045300 Populus trichocarpa HOM05D005723 ORTHO05D005968 4.1e-52 208.4 209 53.1
QL07p023897 Quercus lobata HOM05D005723 ORTHO05D005968 4.1e-52 208.4 206 54.4
Thecc.05G171800 Theobroma cacao HOM05D005723 ORTHO05D005968 4.1e-52 208.4 195 54.4
Gorai.006G143000 Gossypium raimondii HOM05D005723 ORTHO05D005968 5.4e-52 208.0 215 53.0
Hund24799 Selenicereus undatus HOM05D005723 ORTHO05D005968 1.6e-51 206.5 203 52.7
Gohir.D09G124200 Gossypium hirsutum HOM05D005723 ORTHO05D005968 2.0e-51 206.1 214 52.8
FAN14G2504 Fragaria x ananassa HOM05D005723 ORTHO05D005968 2.7e-51 205.7 199 54.3
Sc13g0002300 Simmondsia chinensis HOM05D005723 ORTHO05D005968 2.7e-51 205.7 193 54.4
RcHm_v2.0_Chr3g0479531 Rosa chinensis HOM05D005723 ORTHO05D005968 3.5e-51 205.3 199 53.3
A03p23560 Brassica napus HOM05D005723 ORTHO05D005968 4.6e-51 204.9 194 53.6
BraA03t11573Z Brassica rapa HOM05D005723 ORTHO05D005968 4.6e-51 204.9 194 53.6
FAN02G2166 Fragaria x ananassa HOM05D005723 ORTHO05D005968 5.9e-51 204.5 199 53.8
BcaC01g05310 Brassica carinata HOM05D005723 ORTHO05D005968 1.0e-50 203.8 194 53.1
THA.LOC104824477 Tarenaya hassleriana HOM05D005723 ORTHO05D005968 1.0e-50 203.8 194 54.6
BcaB01g03439 Brassica carinata HOM05D005723 ORTHO05D005968 1.3e-50 203.4 194 53.1
MD12G1056700 Malus domestica HOM05D005723 ORTHO05D005968 1.3e-50 203.4 197 53.3
TAR623G0918 Trochodendron aralioides HOM05D005723 ORTHO05D005968 1.7e-50 203.0 200 53.0
Aqoxy1G00026 Aquilegia oxysepala HOM05D005723 ORTHO05D005968 2.3e-50 202.6 203 51.7
EL10Ac3g06909 Beta vulgaris HOM05D005723 ORTHO05D005968 2.3e-50 202.6 212 50.5
Nitab4.5_0000324g0030 Nicotiana tabacum HOM05D005723 ORTHO05D005968 2.3e-50 202.6 193 52.8
Aa31LG1G24130 Aethionema arabicum HOM05D005723 ORTHO05D005968 2.9e-50 202.2 194 53.6
Ah.04g152500 Amaranthus hybridus HOM05D005723 ORTHO05D005968 5.0e-50 201.4 193 52.3
BcaC02g12456 Brassica carinata HOM05D005723 ORTHO05D005968 5.0e-50 201.4 194 52.6
BcaNung04410 Brassica carinata HOM05D005723 ORTHO05D005968 5.0e-50 201.4 194 53.1
C04p03240 Brassica napus HOM05D005723 ORTHO05D005968 5.0e-50 201.4 194 52.6
BolC4t21962H Brassica oleracea HOM05D005723 ORTHO05D005968 5.0e-50 201.4 194 52.6
Migut.K00036 Erythranthe guttata HOM05D005723 ORTHO05D005968 5.0e-50 201.4 193 53.4
BolC3t15179H Brassica oleracea HOM05D005723 ORTHO05D005968 8.6e-50 200.7 194 52.6
Sp4g24280 Schrenkiella parvula HOM05D005723 ORTHO05D005968 8.6e-50 200.7 182 54.9
AT2G42070 Arabidopsis thaliana HOM05D005723 ORTHO05D005968 1.5e-49 199.9 194 53.1
A05p02710 Brassica napus HOM05D005723 ORTHO05D005968 1.5e-49 199.9 194 53.1
BraA05t19263Z Brassica rapa HOM05D005723 ORTHO05D005968 1.5e-49 199.9 194 53.1
CARHR137150 Cardamine hirsuta HOM05D005723 ORTHO05D005968 1.9e-49 199.5 194 53.1
CsaV3_3G038770 Cucumis sativus L. HOM05D005723 ORTHO05D005968 1.9e-49 199.5 152 67.1
GSVIVG01033492001 Vitis vinifera HOM05D005723 ORTHO05D005968 1.9e-49 199.5 203 52.2
Thhalv10017043m.g Eutrema salsugineum HOM05D005723 ORTHO05D005968 2.5e-49 199.1 194 53.1
Prupe.7G077500 Prunus persica HOM05D005723 ORTHO05D005968 2.5e-49 199.1 209 51.7
HanXRQChr13g0390481 Helianthus annuus HOM05D005723 ORTHO05D005968 3.3e-49 198.7 201 51.2
THA.LOC104802583 Tarenaya hassleriana HOM05D005723 ORTHO05D005968 3.3e-49 198.7 194 53.1
AL4G40430 Arabidopsis lyrata HOM05D005723 ORTHO05D005968 9.5e-49 197.2 194 52.6
Carub.0004s2440 Capsella rubella HOM05D005723 ORTHO05D005968 9.5e-49 197.2 194 52.6
Solyc03g062830.3 Solanum lycopersicum HOM05D005723 ORTHO05D005968 9.5e-49 197.2 202 51.0
Peaxi162Scf00258g00623 Petunia axillaris HOM05D005723 ORTHO05D005968 1.2e-48 196.8 209 50.2
Sopen03g015150 Solanum pennellii HOM05D005723 ORTHO05D005968 1.6e-48 196.4 202 51.0
Actinidia17274 Actinidia chinensis HOM05D005723 ORTHO05D005968 2.1e-48 196.1 201 51.7
SGA_v2.0_scaffold274G46488 Striga asiatica HOM05D005723 ORTHO05D005968 3.6e-48 195.3 211 49.8
Lju124A25G33 Lonicera japonica HOM05D005723 ORTHO05D005968 1.4e-47 193.4 193 51.8
Nn2g15696 Nelumbo nucifera HOM05D005723 ORTHO05D005968 1.8e-47 193.0 206 46.1
Hma1.2p1_0648F.1_g195110 Hydrangea macrophylla HOM05D005723 ORTHO05D005968 2.3e-47 192.6 202 50.0
Cc06_g15920 Coffea canephora HOM05D005723 ORTHO05D005968 2.6e-46 189.1 203 47.8
arahy.Tifrunner.gnm1.ann1.USMU0G Arachis hypogaea HOM05D005723 ORTHO05D005968 5.8e-46 188.0 176 56.2
Glyma.03G145000 Glycine max HOM05D005723 ORTHO05D005968 7.5e-46 187.6 178 54.5
Duzib093G0286 Durio zibethinus HOM05D005723 ORTHO05D005968 3.7e-45 185.3 179 53.6
MBI08_g23085_MAGBIO Magnolia biondii HOM05D005723 ORTHO05D005968 1.9e-44 183.0 202 49.0
PGR142G4063 Punica granatum HOM05D005723 ORTHO05D005968 4.1e-44 181.8 174 54.0
PSO339G0271 Papaver somniferum HOM05D005723 ORTHO05D005968 9.2e-44 180.6 194 49.0
FvH4_6g22180 Fragaria vesca HOM05D005723 ORTHO05D005968 2.0e-43 179.5 181 53.6
PSO384G0309 Papaver somniferum HOM05D005723 ORTHO05D005968 3.5e-43 178.7 194 48.5
FAN05G3703 Fragaria x ananassa HOM05D005723 ORTHO05D005968 6.0e-43 177.9 181 53.0
Dinv14303 Davidia involucrata HOM05D005723 ORTHO05D005968 3.0e-42 175.6 151 59.6
C03p28100 Brassica napus HOM05D005723 ORTHO05D005968 1.5e-41 173.3 174 52.3
CDE05G1067 Ceratophyllum demersum HOM05D005723 ORTHO05D005968 1.9e-41 172.9 193 46.6
CDE05G2791 Ceratophyllum demersum HOM05D005723 ORTHO05D005968 1.9e-41 172.9 204 45.6
Ciclev10013558m.g Citrus clementina HOM05D005723 ORTHO05D005968 1.9e-41 172.9 173 50.3
Rhsim04G0096600 Rhododendron simsii HOM05D005723 ORTHO05D005968 2.5e-41 172.6 192 49.0
MSTRG.6477 Avicennia marina HOM05D005723 ORTHO05D005968 3.3e-41 172.2 201 46.3
Oeu024483.2 Olea europaea HOM05D005723 ORTHO05D005968 5.6e-41 171.4 173 51.4
Cpa.g.sc85.50 Carica papaya HOM05D005723 ORTHO05D005968 7.3e-41 171.0 143 60.1
Zm00001eb320790 Zea mays HOM05D005723 ORTHO05D005968 1.6e-40 169.9 206 43.2
DCAR_019848 Daucus carota HOM05D005723 ORTHO05D005968 8.1e-40 167.5 199 45.2
MD14G1055000 Malus domestica HOM05D005723 ORTHO05D005968 1.4e-39 166.8 159 57.2
Lsat_1_v5_gn_5_163580 Lactuca sativa HOM05D005723 ORTHO05D005968 1.8e-39 166.4 204 45.1
Zm00001eb104410 Zea mays HOM05D005723 ORTHO05D005968 1.8e-39 166.4 196 43.9
Nitab4.5_0002488g0020 Nicotiana tabacum HOM05D005723 ORTHO05D005968 2.3e-39 166.0 181 49.7
SalBow1G1145 Salvia bowleyana HOM05D005723 ORTHO05D005968 3.1e-39 165.6 108 71.3
Pp3c12_9930 Physcomitrium patens HOM05D005723 ORTHO05D005968 3.4e-38 162.2 192 45.8
HPP92_009024 Vanilla planifolia HOM05D005723 ORTHO05D005968 5.8e-38 161.4 187 46.0
ATR0807G138 Amborella trichopoda HOM05D005723 ORTHO05D005968 9.2e-36 154.1 175 46.9
HPP92_009080 Vanilla planifolia HOM05D005723 ORTHO05D005968 7.8e-35 151.0 139 52.5
Os09g0553300 Oryza sativa ssp. japonica HOM05D005723 ORTHO05D005968 1.3e-34 150.2 109 63.3
SMO358G0738 Selaginella moellendorffii HOM05D005723 ORTHO05D005968 1.1e-33 147.1 193 40.9
arahy.Tifrunner.gnm1.ann1.4E6ATU Arachis hypogaea HOM05D005723 ORTHO05D005968 8.1e-32 141.0 161 50.3
Mapoly0013s0082 Marchantia polymorpha HOM05D005723 ORTHO05D005968 2.3e-31 139.4 108 60.2
AUR62015361 Chenopodium quinoa HOM05D005723 ORTHO05D005968 3.1e-31 139.0 157 49.7
AagrBONN_evm.TU.Sc2ySwM_117.3227 Anthoceros agrestis HOM05D005723 ORTHO05D005968 8.9e-31 137.5 109 59.6
TWI74G1261 Tripterygium wilfordii HOM05D005723 ORTHO05D005968 2.6e-30 136.0 198 42.9
Oeu034265.1 Olea europaea HOM05D005723 ORTHO05D005968 4.4e-30 135.2 156 48.7
AUR62012024 Chenopodium quinoa HOM05D005723 ORTHO05D005968 1.3e-29 133.7 151 49.0
HanXRQChr01g0009761 Helianthus annuus HOM05D005723 ORTHO05D005968 3.7e-29 132.1 157 47.1
ECA248G2266 Erigeron canadensis HOM05D005723 ORTHO05D005968 5.4e-28 128.3 157 45.9
Cre06.g285200 Chlamydomonas reinhardtii HOM05D005723 ORTHO05D005968 6.0e-27 124.8 197 35.0
PRCOL_00004505 Prasinoderma coloniale HOM05D005723 ORTHO05D005968 1.1e-25 120.6 196 33.7
arahy.Tifrunner.gnm1.ann1.WEU379 Arachis hypogaea HOM05D005723 ORTHO05D005968 1.5e-25 120.2 237 34.6
Pp3c3_14150 Physcomitrium patens HOM05D005723 ORTHO05D005968 8.9e-23 110.9 108 53.7
Haze_19996 Corylus avellana HOM05D005723 ORTHO05D005968 2.4e-20 102.8 122 49.2
SEGI_25574 Sequoiadendron giganteum HOM05D005723 ORTHO05D005968 4.6e-19 98.6 138 44.9
unitig_748.g7589 Utricularia gibba HOM05D005723 ORTHO05D005968 6.0e-19 98.2 141 41.8
MSTRG.10844 Avicennia marina HOM05D005723 ORTHO05D005968 3.3e-17 92.4 121 45.5
Actinidia38586 Actinidia chinensis HOM05D005723 ORTHO05D005968 5.6e-17 91.7 176 36.9
arahy.Tifrunner.gnm1.ann1.HLHI9C Arachis hypogaea HOM05D005723 ORTHO05D005968 2.4e-15 86.3 118 44.9
CBR_g29504 Chara braunii HOM05D005723 ORTHO05D005968 2.6e-14 82.8 146 34.9
Haze_19995 Corylus avellana HOM05D005723 ORTHO05D005968 7.1e-12 74.7 37 78.4
vmacro09121 Vaccinium macrocarpon HOM05D005723 ORTHO05D005968 1.6e-11 73.6 48 64.6
MCO15G614 Micromonas commoda HOM05D005723 ORTHO05D005968 1.9e-09 66.6 94 36.2
C05p20370 Brassica napus HOM05D005723 ORTHO05D005968 1.4e-07 60.5 99 38.4
BolC5t30732H Brassica oleracea HOM05D000589 ORTHO05D005968 1.4e-07 60.5 99 38.4
Gohir.A13G075901 Gossypium hirsutum HOM05D005723 ORTHO05D005968 5.3e-07 58.5 72 47.2


User provided reference genes

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