Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0026513 Sechium edule HOM05D006244 ORTHO05D007401 9.9e-141 503.4 255 100.0
MELO3C009823.2 Cucumis melo HOM05D006244 ORTHO05D007401 2.0e-101 372.9 236 81.4
CsaV3_3G040880 Cucumis sativus L. HOM05D006244 ORTHO05D007401 7.7e-101 370.9 237 80.6
ClCG10G015550 Citrullus lanatus HOM05D006244 ORTHO05D007401 1.7e-100 369.8 238 81.5
MD04G1042500 Malus domestica HOM05D006244 ORTHO05D007401 1.7e-68 263.5 242 57.9
QL10p050150 Quercus lobata HOM05D006244 ORTHO05D007401 2.9e-68 262.7 242 57.4
QL05p011148 Quercus lobata HOM05D006244 ORTHO05D007401 5.0e-68 261.9 242 57.9
CANSAT78G1025 Cannabis sativa HOM05D006244 ORTHO05D007401 1.5e-67 260.4 238 57.1
CiPaw.02G053900 Carya illinoinensis HOM05D006244 ORTHO05D007401 1.9e-67 260.0 238 57.6
Prupe.1G196900 Prunus persica HOM05D006244 ORTHO05D007401 2.5e-67 259.6 239 56.9
TAR636G2962 Trochodendron aralioides HOM05D006244 ORTHO05D007401 3.6e-66 255.8 239 55.2
Manes.04G043800 Manihot esculenta HOM05D006244 ORTHO05D007401 4.7e-66 255.4 242 57.0
Cfa020094 Carpinus fangiana HOM05D006244 ORTHO05D007401 2.3e-65 253.1 239 57.7
Atru.chr4.1240 Acer truncatum HOM05D006244 ORTHO05D007401 4.0e-65 252.3 233 58.4
GSVIVG01010791001 Vitis vinifera HOM05D006244 ORTHO05D007401 4.0e-65 252.3 238 54.2
Actinidia11297 Actinidia chinensis HOM05D006244 ORTHO05D007401 2.0e-64 250.0 230 57.4
FAN07G2433 Fragaria x ananassa HOM05D006244 ORTHO05D007401 2.0e-64 250.0 239 54.4
Dinv22748 Davidia involucrata HOM05D006244 ORTHO05D007401 2.6e-64 249.6 226 59.3
Hund03170 Selenicereus undatus HOM05D006244 ORTHO05D007401 5.8e-64 248.4 253 53.4
RcHm_v2.0_Chr4g0406631 Rosa chinensis HOM05D006244 ORTHO05D007401 7.5e-64 248.1 236 53.0
Duzib175G0007 Durio zibethinus HOM05D006244 ORTHO05D007401 9.8e-64 247.7 237 56.5
Lj3g0008901 Lotus japonicus HOM05D006244 ORTHO05D007401 3.7e-63 245.7 237 56.1
FvH4_4g10850 Fragaria vesca HOM05D006244 ORTHO05D007401 6.4e-63 245.0 227 53.7
FAN12G2117 Fragaria x ananassa HOM05D006244 ORTHO05D007401 6.4e-63 245.0 227 53.7
COL.COLO4_12977 Corchorus olitorius HOM05D006244 ORTHO05D007401 1.9e-62 243.4 252 54.8
Duzib151G0743 Durio zibethinus HOM05D006244 ORTHO05D007401 2.4e-62 243.0 237 55.7
Aqoxy2G04144 Aquilegia oxysepala HOM05D006244 ORTHO05D007401 5.4e-62 241.9 231 53.7
Gorai.011G141500 Gossypium raimondii HOM05D006244 ORTHO05D007401 7.0e-62 241.5 238 55.9
Thecc.04G177000 Theobroma cacao HOM05D006244 ORTHO05D007401 9.2e-62 241.1 239 54.8
Gohir.D10G128300 Gossypium hirsutum HOM05D006244 ORTHO05D007401 1.6e-61 240.4 238 55.9
AT3G59490 Arabidopsis thaliana HOM05D006244 ORTHO05D007401 2.0e-61 240.0 234 55.6
Ciclev10021382m.g Citrus clementina HOM05D006244 ORTHO05D007401 2.0e-61 240.0 233 54.1
ECA248G0275 Erigeron canadensis HOM05D006244 ORTHO05D007401 3.5e-61 239.2 237 51.9
Hma1.2p1_0324F.1_g125510 Hydrangea macrophylla HOM05D006244 ORTHO05D007401 4.6e-61 238.8 234 53.0
Lalb_Chr22g0352091 Lupinus albus HOM05D006244 ORTHO05D007401 1.0e-60 237.7 238 52.9
Potri.017G028900 Populus trichocarpa HOM05D006244 ORTHO05D007401 1.3e-60 237.3 235 54.0
AL5G41400 Arabidopsis lyrata HOM05D006244 ORTHO05D007401 2.3e-60 236.5 234 55.6
Carub.0005s2622 Capsella rubella HOM05D006244 ORTHO05D007401 3.0e-60 236.1 234 56.0
Sp5g03670 Schrenkiella parvula HOM05D006244 ORTHO05D007401 3.0e-60 236.1 234 55.6
CSS0032343 Camellia sinensis var. sinensis HOM05D006244 ORTHO05D007401 3.9e-60 235.7 238 52.5
Cpa.g.sc9.298 Carica papaya HOM05D006244 ORTHO05D007401 3.9e-60 235.7 233 57.5
Sabra17G0017500 Salix brachista HOM05D006244 ORTHO05D007401 3.9e-60 235.7 232 53.9
Sc19g0002910 Simmondsia chinensis HOM05D006244 ORTHO05D007401 3.9e-60 235.7 238 51.3
Eucgr.H00368 Eucalyptus grandis HOM05D006244 ORTHO05D007401 5.0e-60 235.3 242 51.7
CARHR169870 Cardamine hirsuta HOM05D006244 ORTHO05D007401 8.6e-60 234.6 234 55.6
PSO732G0675 Papaver somniferum HOM05D006244 ORTHO05D007401 1.1e-59 234.2 236 52.1
Gohir.A10G138500 Gossypium hirsutum HOM05D006244 ORTHO05D007401 1.5e-59 233.8 238 54.6
Lsat_1_v5_gn_1_77900 Lactuca sativa HOM05D006244 ORTHO05D007401 2.5e-59 233.0 230 51.7
THA.LOC104803749 Tarenaya hassleriana HOM05D006244 ORTHO05D007401 3.3e-59 232.6 239 53.6
TWI38G0370 Tripterygium wilfordii HOM05D006244 ORTHO05D007401 5.6e-59 231.9 234 53.4
Thhalv10006132m.g Eutrema salsugineum HOM05D006244 ORTHO05D007401 1.2e-58 230.7 234 53.4
PSO675G8539 Papaver somniferum HOM05D006244 ORTHO05D007401 2.1e-58 229.9 249 49.8
Sopen11g020640 Solanum pennellii HOM05D006244 ORTHO05D007401 2.1e-58 229.9 240 51.7
Solyc11g045210.2 Solanum lycopersicum HOM05D006244 ORTHO05D007401 2.8e-58 229.6 240 51.7
BcaC07g40478 Brassica carinata HOM05D006244 ORTHO05D007401 6.2e-58 228.4 238 53.8
HanXRQChr11g0343701 Helianthus annuus HOM05D006244 ORTHO05D007401 6.2e-58 228.4 234 51.3
BcaC07g40479 Brassica carinata HOM05D006244 ORTHO05D007401 8.1e-58 228.0 235 54.5
SalBow3G2237 Salvia bowleyana HOM05D006244 ORTHO05D007401 8.1e-58 228.0 242 49.6
PGSC0003DMG400022864 Solanum tuberosum HOM05D006244 ORTHO05D007401 1.1e-57 227.6 241 51.5
Cc07_g21300 Coffea canephora HOM05D006244 ORTHO05D007401 1.4e-57 227.3 235 52.3
Aa31LG10G13810 Aethionema arabicum HOM05D006244 ORTHO05D007401 2.3e-57 226.5 234 51.7
Nitab4.5_0004117g0020 Nicotiana tabacum HOM05D006244 ORTHO05D007401 2.3e-57 226.5 240 50.8
A04p02170 Brassica napus HOM05D006244 ORTHO05D007401 3.1e-57 226.1 234 54.3
EL10Ac3g05981 Beta vulgaris HOM05D006244 ORTHO05D007401 4.0e-57 225.7 239 50.2
Nitab4.5_0008822g0040 Nicotiana tabacum HOM05D006244 ORTHO05D007401 5.2e-57 225.3 241 50.6
MSTRG.9759 Avicennia marina HOM05D006244 ORTHO05D007401 8.9e-57 224.6 235 49.8
BraA04t15944Z Brassica rapa HOM05D006244 ORTHO05D007401 8.9e-57 224.6 234 54.3
Rhsim09G0025200 Rhododendron simsii HOM05D006244 ORTHO05D007401 8.9e-57 224.6 295 43.7
AUR62023861 Chenopodium quinoa HOM05D006244 ORTHO05D007401 1.2e-56 224.2 241 50.6
DCAR_028445 Daucus carota HOM05D006244 ORTHO05D007401 2.6e-56 223.0 229 51.5
PGR142G0422 Punica granatum HOM05D006244 ORTHO05D007401 4.4e-56 222.2 240 50.8
A09p51770 Brassica napus HOM05D006244 ORTHO05D007401 5.8e-56 221.9 234 53.8
BcaNung05942 Brassica carinata HOM05D006244 ORTHO05D007401 7.5e-56 221.5 222 55.9
BraA09t40612Z Brassica rapa HOM05D006244 ORTHO05D007401 7.5e-56 221.5 234 53.0
unitig_0.g2404 Utricularia gibba HOM05D006244 ORTHO05D007401 7.5e-56 221.5 236 52.1
arahy.Tifrunner.gnm1.ann1.IE55HN Arachis hypogaea HOM05D006244 ORTHO05D007401 9.8e-56 221.1 241 49.4
C08p34500 Brassica napus HOM05D006244 ORTHO05D007401 9.8e-56 221.1 234 53.0
BolC8t51051H Brassica oleracea HOM05D006244 ORTHO05D007401 9.8e-56 221.1 234 53.0
Peaxi162Scf00126g00623 Petunia axillaris HOM05D006244 ORTHO05D007401 9.8e-56 221.1 241 49.8
Actinidia27645 Actinidia chinensis HOM05D006244 ORTHO05D007401 1.3e-55 220.7 207 56.0
CAN.G31.8 Capsicum annuum HOM05D006244 ORTHO05D007401 1.3e-55 220.7 243 50.2
TPR.G18836 Trifolium pratense HOM05D006244 ORTHO05D007401 1.3e-55 220.7 234 51.3
BcaB02g08221 Brassica carinata HOM05D006244 ORTHO05D007401 6.4e-55 218.4 234 53.0
arahy.Tifrunner.gnm1.ann1.LPC3IP Arachis hypogaea HOM05D006244 ORTHO05D007401 8.3e-55 218.0 240 48.3
Psat5g289400 Pisum sativum HOM05D006244 ORTHO05D007401 1.1e-54 217.6 234 51.7
Ah.07g202200 Amaranthus hybridus HOM05D006244 ORTHO05D007401 2.4e-54 216.5 235 47.2
ATR0743G009 Amborella trichopoda HOM05D006244 ORTHO05D007401 1.6e-53 213.8 237 45.1
Glyma.15G029700 Glycine max HOM05D006244 ORTHO05D007401 2.7e-53 213.0 243 50.6
Medtr2g098960 Medicago truncatula HOM05D006244 ORTHO05D007401 1.7e-52 210.3 234 49.6
AUR62002326 Chenopodium quinoa HOM05D006244 ORTHO05D007401 5.1e-52 208.8 241 47.3
MBI08_g33169_MAGBIO Magnolia biondii HOM05D006244 ORTHO05D007401 1.9e-51 206.8 209 51.7
Migut.G01000 Erythranthe guttata HOM05D006244 ORTHO05D007401 3.3e-51 206.1 230 48.7
vmacro00644 Vaccinium macrocarpon HOM05D006244 ORTHO05D007401 2.3e-49 199.9 203 51.2
FAN17G1708 Fragaria x ananassa HOM05D006244 ORTHO05D007401 1.5e-48 197.2 204 52.0
HPP92_001264 Vanilla planifolia HOM05D006244 ORTHO05D007401 2.6e-48 196.4 248 43.5
HPP92_001248 Vanilla planifolia HOM05D006244 ORTHO05D007401 3.4e-48 196.1 248 43.5
Nn3g18564 Nelumbo nucifera HOM05D006244 ORTHO05D007401 3.0e-44 183.0 244 43.9
VMungo1080G0762 Vigna mungo HOM05D006244 ORTHO05D007401 3.0e-44 183.0 205 49.3
Phvul.005G153400 Phaseolus vulgaris HOM05D006244 ORTHO05D007401 2.1e-42 176.8 204 48.0
Zm00001eb318410 Zea mays HOM05D006244 ORTHO05D007401 2.8e-42 176.4 243 40.3
C04p33420 Brassica napus HOM05D006244 ORTHO05D007401 1.4e-41 174.1 235 46.8
BolC4t24903H Brassica oleracea HOM05D006244 ORTHO05D007401 2.6e-40 169.9 235 44.7
Lju337A6T20 Lonicera japonica HOM05D006244 ORTHO05D007401 2.0e-32 143.7 158 48.7
Cfa015178 Carpinus fangiana HOM05D006244 ORTHO05D007401 3.4e-32 142.9 158 51.3
Psat5g289440 Pisum sativum HOM05D006244 ORTHO05D007401 1.7e-28 130.6 123 56.9
Os09g0515300 Oryza sativa ssp. japonica HOM05D006244 ORTHO05D007401 2.0e-24 117.1 125 46.4
Pp3c9_3600 Physcomitrium patens HOM05D006244 ORTHO05D007401 2.0e-24 117.1 241 31.1
SMO364G0376 Selaginella moellendorffii HOM05D006244 ORTHO05D007401 1.9e-19 100.5 223 30.0
Lju337A6G22 Lonicera japonica HOM05D006244 ORTHO05D007401 2.8e-18 96.7 68 64.7
Lj6C77T3 Lonicera japonica HOM05D006244 ORTHO05D007401 6.2e-18 95.5 67 65.7
C04p32460 Brassica napus HOM05D006244 ORTHO05D007401 5.3e-17 92.4 158 39.9
Peaxi162Scf01193g00009 Petunia axillaris HOM05D006244 ORTHO05D007401 1.0e-15 88.2 135 40.0
Peaxi162Scf00533g00611 Petunia axillaris HOM05D006244 ORTHO05D007401 2.9e-15 86.7 135 39.3
Sabra17G0062000 Salix brachista HOM05D006244 ORTHO05D007401 4.9e-15 85.9 122 43.4
Peaxi162Scf00066g02019 Petunia axillaris HOM05D006244 ORTHO05D007401 8.4e-15 85.1 135 38.5
Peaxi162Scf00272g00041 Petunia axillaris HOM05D006244 ORTHO05D007401 2.1e-13 80.5 124 40.3
MBI08_g09972_MAGBIO Magnolia biondii HOM05D006244 ORTHO05D007401 1.3e-12 77.8 113 40.7
Zm00001eb239190 Zea mays HOM05D001072 ORTHO05D007401 1.8e-12 77.4 62 54.8
Peaxi162Scf00627g00001 Petunia axillaris HOM05D006244 ORTHO05D007401 3.0e-12 76.6 124 38.7
Lj6A77G23 Lonicera japonica HOM05D006244 ORTHO05D007401 1.5e-11 74.3 103 39.8
BcaC02g10138 Brassica carinata HOM05D006244 ORTHO05D007401 1.9e-11 73.9 223 30.0
Peaxi162Scf00404g00815 Petunia axillaris HOM05D006244 ORTHO05D007401 4.3e-11 72.8 138 37.0
vmacro00645 Vaccinium macrocarpon HOM05D006244 ORTHO05D007401 5.5e-06 55.8 35 71.4


User provided reference genes

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