Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0026509 Sechium edule HOM05D003781 ORTHO05D004299 1.1e-195 686.4 338 100.0
CsaV3_3G037920 Cucumis sativus L. HOM05D003781 ORTHO05D004299 3.8e-140 501.9 358 74.0
MELO3C009536.2 Cucumis melo HOM05D003781 ORTHO05D004299 1.8e-137 493.0 356 72.8
ClCG10G018370 Citrullus lanatus HOM05D003781 ORTHO05D004299 1.7e-127 459.9 315 74.3
Sed0000357 Sechium edule HOM05D003781 ORTHO05D004299 1.8e-121 439.9 295 76.3
Prupe.7G095100 Prunus persica HOM05D003781 ORTHO05D004299 7.8e-101 371.3 360 56.1
GSVIVG01029568001 Vitis vinifera HOM05D003781 ORTHO05D004299 7.6e-96 354.8 373 51.2
QL04p046781 Quercus lobata HOM05D003781 ORTHO05D004299 1.7e-95 353.6 364 52.7
MD12G1039800 Malus domestica HOM05D003781 ORTHO05D004299 2.9e-95 352.8 362 53.3
QL04p047257 Quercus lobata HOM05D003781 ORTHO05D004299 2.1e-93 346.7 360 52.2
Dinv31756 Davidia involucrata HOM05D003781 ORTHO05D004299 3.5e-93 345.9 360 52.2
RcHm_v2.0_Chr3g0475861 Rosa chinensis HOM05D003781 ORTHO05D004299 4.6e-93 345.5 364 54.1
MD14G1038400 Malus domestica HOM05D003781 ORTHO05D004299 6.0e-93 345.1 363 52.9
Dinv12337 Davidia involucrata HOM05D003781 ORTHO05D004299 7.8e-93 344.7 361 52.4
RcHm_v2.0_Chr1g0331051 Rosa chinensis HOM05D003781 ORTHO05D004299 1.0e-92 344.4 365 54.0
Actinidia03891 Actinidia chinensis HOM05D003781 ORTHO05D004299 5.1e-92 342.0 360 53.9
Actinidia04001 Actinidia chinensis HOM05D003781 ORTHO05D004299 5.1e-92 342.0 360 53.9
GSVIVG01037869001 Vitis vinifera HOM05D003781 ORTHO05D004299 6.6e-92 341.7 378 50.3
FAN02G2206 Fragaria x ananassa HOM05D003781 ORTHO05D004299 1.1e-91 340.9 362 51.9
Haze_20190 Corylus avellana HOM05D003781 ORTHO05D004299 2.5e-91 339.7 359 51.8
QL07p036815 Quercus lobata HOM05D003781 ORTHO05D004299 2.5e-91 339.7 361 51.5
Duzib093G1220 Durio zibethinus HOM05D003781 ORTHO05D004299 3.6e-90 335.9 358 50.0
Lalb_Chr18g0056351 Lupinus albus HOM05D003781 ORTHO05D004299 8.1e-90 334.7 346 52.9
TWI74G1316 Tripterygium wilfordii HOM05D003781 ORTHO05D004299 8.1e-90 334.7 356 48.9
FvH4_6g20270 Fragaria vesca HOM05D003781 ORTHO05D004299 1.1e-89 334.3 366 51.1
FAN14G3039 Fragaria x ananassa HOM05D003781 ORTHO05D004299 1.8e-89 333.6 366 50.8
Gorai.006G149700 Gossypium raimondii HOM05D003781 ORTHO05D004299 8.9e-89 331.3 357 50.1
Gohir.D09G131000 Gossypium hirsutum HOM05D003781 ORTHO05D004299 1.5e-88 330.5 357 50.1
Potri.016G070800 Populus trichocarpa HOM05D003781 ORTHO05D004299 2.0e-88 330.1 365 50.1
TAR636G1975 Trochodendron aralioides HOM05D003781 ORTHO05D004299 3.4e-88 329.3 362 51.1
Ciclev10012131m.g Citrus clementina HOM05D003781 ORTHO05D004299 4.9e-87 325.5 356 50.6
FAN05G1631 Fragaria x ananassa HOM05D003781 ORTHO05D004299 4.9e-87 325.5 390 48.2
FAN05G5379 Fragaria x ananassa HOM05D003781 ORTHO05D004299 4.9e-87 325.5 390 48.2
CiPaw.09G020700 Carya illinoinensis HOM05D003781 ORTHO05D004299 8.4e-87 324.7 364 49.2
Lj1g0015362 Lotus japonicus HOM05D003781 ORTHO05D004299 1.4e-86 323.9 346 53.5
Haze_19697 Corylus avellana HOM05D003781 ORTHO05D004299 1.9e-86 323.6 353 52.1
Ca_03587_v3 Cicer arietinum L. HOM05D003781 ORTHO05D004299 4.2e-86 322.4 348 51.4
Atru.chr8.1371 Acer truncatum HOM05D003781 ORTHO05D004299 1.2e-85 320.9 356 49.7
FAN09G0267 Fragaria x ananassa HOM05D003781 ORTHO05D004299 1.2e-85 320.9 393 47.8
Medtr0036s0040 Medicago truncatula HOM05D003781 ORTHO05D004299 3.5e-85 319.3 346 52.0
Manes.08G033100 Manihot esculenta HOM05D003781 ORTHO05D004299 4.6e-85 318.9 361 48.2
TWI53G0607 Tripterygium wilfordii HOM05D003781 ORTHO05D004299 1.0e-84 317.8 357 47.1
vmacro07475 Vaccinium macrocarpon HOM05D003781 ORTHO05D004299 1.0e-84 317.8 362 50.6
Thecc.05G103800 Theobroma cacao HOM05D003781 ORTHO05D004299 1.3e-84 317.4 358 49.7
DCAR_009179 Daucus carota HOM05D003781 ORTHO05D004299 3.0e-84 316.2 357 50.4
TAR633G0070 Trochodendron aralioides HOM05D003781 ORTHO05D004299 3.0e-84 316.2 362 48.9
Cpa.g.sc10.172 Carica papaya HOM05D003781 ORTHO05D004299 6.6e-84 315.1 355 49.6
Sopen01g003140 Solanum pennellii HOM05D003781 ORTHO05D004299 1.1e-83 314.3 353 48.4
arahy.Tifrunner.gnm1.ann1.GQX3NW Arachis hypogaea HOM05D003781 ORTHO05D004299 7.3e-83 311.6 350 50.6
CANSAT01G0129 Cannabis sativa HOM05D003781 ORTHO05D004299 1.6e-82 310.5 365 46.8
arahy.Tifrunner.gnm1.ann1.WYX60D Arachis hypogaea HOM05D003781 ORTHO05D004299 2.1e-82 310.1 351 50.7
Psat5g299360 Pisum sativum HOM05D003781 ORTHO05D004299 2.8e-82 309.7 349 51.0
COL.COLO4_29580 Corchorus olitorius HOM05D004248 ORTHO05D004978 3.6e-82 309.3 341 48.4
Solyc01g007160.4 Solanum lycopersicum HOM05D003781 ORTHO05D004299 1.8e-81 307.0 358 47.2
VMungo0464G1804 Vigna mungo HOM05D003781 ORTHO05D004299 1.8e-81 307.0 342 50.6
PGSC0003DMG400021351 Solanum tuberosum HOM05D003781 ORTHO05D004299 4.0e-81 305.8 363 47.4
Phvul.001G195300 Phaseolus vulgaris HOM05D003781 ORTHO05D004299 5.3e-81 305.4 342 48.8
Sabra16G0070900 Salix brachista HOM05D003781 ORTHO05D004299 5.3e-81 305.4 371 47.7
Sabra16G0073100 Salix brachista HOM05D003781 ORTHO05D004299 5.3e-81 305.4 371 47.7
Ca_17838_v3 Cicer arietinum L. HOM05D003781 ORTHO05D004299 9.0e-81 304.7 345 50.4
Cc06_g06510 Coffea canephora HOM05D003781 ORTHO05D004299 7.6e-80 301.6 357 46.8
VMungo1383G2961 Vigna mungo HOM05D003781 ORTHO05D004299 1.7e-79 300.4 341 48.4
Glyma.19G200100 Glycine max HOM05D003781 ORTHO05D004299 2.2e-79 300.1 342 50.3
PGR142G3605 Punica granatum HOM05D003781 ORTHO05D004299 3.8e-79 299.3 346 48.0
Thhalv10027115m.g Eutrema salsugineum HOM05D003781 ORTHO05D004299 1.1e-78 297.7 345 48.7
Glyma.19G199100 Glycine max HOM05D003781 ORTHO05D004299 1.1e-78 297.7 342 50.0
PGR142G3230 Punica granatum HOM05D003781 ORTHO05D004299 1.1e-78 297.7 366 47.8
Nitab4.5_0001122g0140 Nicotiana tabacum HOM05D003781 ORTHO05D004299 3.2e-78 296.2 356 47.8
Nn2g14295 Nelumbo nucifera HOM05D003781 ORTHO05D004299 9.3e-78 294.7 364 47.8
A08p18640 Brassica napus HOM05D003781 ORTHO05D004299 2.7e-77 293.1 347 49.6
Medtr2g102470 Medicago truncatula HOM05D003781 ORTHO05D004299 4.6e-77 292.4 350 48.6
CAN.G170.93 Capsicum annuum HOM05D003781 ORTHO05D004299 1.3e-76 290.8 359 47.4
Hma1.2p1_0064F.1_g034690 Hydrangea macrophylla HOM05D003781 ORTHO05D004299 1.3e-76 290.8 327 50.5
Nitab4.5_0000020g0070 Nicotiana tabacum HOM05D003781 ORTHO05D004299 1.3e-76 290.8 358 46.9
Sp7g29260 Schrenkiella parvula HOM05D003781 ORTHO05D004299 1.3e-76 290.8 345 48.4
Peaxi162Scf00586g00012 Petunia axillaris HOM05D003781 ORTHO05D004299 5.1e-76 288.9 361 45.7
CARHR239280 Cardamine hirsuta HOM05D003781 ORTHO05D004299 6.7e-76 288.5 345 48.1
BraA08t33827Z Brassica rapa HOM05D003781 ORTHO05D004299 1.1e-75 287.7 350 48.9
Aa31LG2G18950 Aethionema arabicum HOM05D003781 ORTHO05D004299 1.5e-75 287.3 346 47.4
BcaNung04576 Brassica carinata HOM05D003781 ORTHO05D004299 3.3e-75 286.2 352 47.4
BolC7t46313H Brassica oleracea HOM05D003781 ORTHO05D004299 5.6e-75 285.4 352 47.7
ECA248G2654 Erigeron canadensis HOM05D003781 ORTHO05D004299 7.4e-75 285.0 370 45.7
MSTRG.5897 Avicennia marina HOM05D003781 ORTHO05D004299 1.3e-74 284.3 357 48.2
MBI04_g43653_MAGBIO Magnolia biondii HOM05D003781 ORTHO05D004299 1.6e-74 283.9 374 46.0
Sopen01g052480 Solanum pennellii HOM05D003781 ORTHO05D004299 1.6e-74 283.9 357 46.2
THA.LOC104809956 Tarenaya hassleriana HOM05D003781 ORTHO05D004299 1.6e-74 283.9 360 46.7
Aqoxy1G00670 Aquilegia oxysepala HOM05D003781 ORTHO05D004299 2.8e-74 283.1 363 44.9
HanXRQChr01g0025751 Helianthus annuus HOM05D003781 ORTHO05D004299 3.7e-74 282.7 350 44.3
MBI04_g47396_MAGBIO Magnolia biondii HOM05D003781 ORTHO05D004299 3.7e-74 282.7 384 45.6
BraA03t15109Z Brassica rapa HOM05D003781 ORTHO05D004299 4.8e-74 282.3 360 47.8
Lsat_1_v5_gn_6_113040 Lactuca sativa HOM05D003781 ORTHO05D004299 1.1e-73 281.2 379 45.4
Migut.J00706 Erythranthe guttata HOM05D003781 ORTHO05D004299 1.4e-73 280.8 357 46.5
A03p60680 Brassica napus HOM05D003781 ORTHO05D004299 1.8e-73 280.4 360 46.4
C07p58580 Brassica napus HOM05D003781 ORTHO05D004299 1.8e-73 280.4 355 47.3
Solyc01g110330.3 Solanum lycopersicum HOM05D003781 ORTHO05D004299 2.4e-73 280.0 343 46.4
AT4G31400 Arabidopsis thaliana HOM05D003781 ORTHO05D004299 3.1e-73 279.6 346 46.8
PSO541G6247 Papaver somniferum HOM05D003781 ORTHO05D004299 6.9e-73 278.5 361 46.0
CiPaw.10G017000 Carya illinoinensis HOM05D003781 ORTHO05D004299 1.2e-72 277.7 349 47.6
Lsat_1_v5_gn_1_58161 Lactuca sativa HOM05D003781 ORTHO05D004299 1.2e-72 277.7 363 45.7
Hma1.2p1_0381F.1_g140000 Hydrangea macrophylla HOM05D003781 ORTHO05D004299 4.5e-72 275.8 347 45.8
Carub.0007s0916 Capsella rubella HOM05D003781 ORTHO05D004299 7.6e-72 275.0 346 45.7
Oeu034092.2 Olea europaea HOM05D003781 ORTHO05D004299 1.3e-71 274.2 355 47.3
TPR.G37223 Trifolium pratense HOM05D003781 ORTHO05D004299 2.9e-71 273.1 343 46.4
Actinidia31110 Actinidia chinensis HOM05D003781 ORTHO05D004299 1.1e-70 271.2 347 45.0
Hund10883 Selenicereus undatus HOM05D003781 ORTHO05D004299 1.4e-70 270.8 349 45.3
PSO675G8110 Papaver somniferum HOM05D003781 ORTHO05D004299 1.9e-70 270.4 361 45.4
AUR62030753 Chenopodium quinoa HOM05D003781 ORTHO05D004299 2.4e-70 270.0 371 42.9
Eucgr.K02618 Eucalyptus grandis HOM05D003781 ORTHO05D004299 2.4e-70 270.0 290 48.6
AUR62036398 Chenopodium quinoa HOM05D003781 ORTHO05D004299 1.2e-69 267.7 268 51.5
EL10Ac5g12476 Beta vulgaris HOM05D003781 ORTHO05D004299 4.6e-69 265.8 283 50.5
C03p88000 Brassica napus HOM05D003781 ORTHO05D004299 1.8e-68 263.8 260 52.7
Oeu052621.2 Olea europaea HOM05D003781 ORTHO05D004299 5.1e-68 262.3 270 51.5
Rhsim03G0064900 Rhododendron simsii HOM05D003781 ORTHO05D004299 1.5e-67 260.8 359 46.5
SalBow8G0162 Salvia bowleyana HOM05D003781 ORTHO05D004299 1.9e-67 260.4 351 43.9
HanXRQChr16g0532941 Helianthus annuus HOM05D003781 ORTHO05D004299 1.3e-66 257.7 269 50.2
AL7G20660 Arabidopsis lyrata HOM05D003781 ORTHO05D004299 4.8e-66 255.8 307 48.2
SGA_v2.0_scaffold13G06629 Striga asiatica HOM05D003781 ORTHO05D004299 1.1e-65 254.6 364 42.9
CDE06G0061 Ceratophyllum demersum HOM05D003781 ORTHO05D004299 1.8e-65 253.8 368 41.6
Lj2A35G43 Lonicera japonica HOM05D003781 ORTHO05D004299 4.0e-65 252.7 273 50.2
unitig_26.g10109 Utricularia gibba HOM05D003781 ORTHO05D004299 4.0e-65 252.7 351 44.7
BcaB03g12691 Brassica carinata HOM05D003781 ORTHO05D004299 1.5e-64 250.8 303 46.9
CDE08G1154 Ceratophyllum demersum HOM05D003781 ORTHO05D004299 1.5e-64 250.8 279 46.6
Ah.04g152350 Amaranthus hybridus HOM05D003781 ORTHO05D000148 1.0e-63 248.1 352 42.6
CSS0048701 Camellia sinensis var. sinensis HOM05D003781 ORTHO05D004299 1.3e-63 247.7 353 43.3
ATR0772G111 Amborella trichopoda HOM05D003781 ORTHO05D004299 4.9e-63 245.7 387 40.8
RhsimUnG0138100 Rhododendron simsii HOM05D003781 ORTHO05D004299 1.9e-62 243.8 350 43.7
Rhsim09G0141200 Rhododendron simsii HOM05D003781 ORTHO05D004299 7.9e-61 238.4 394 39.1
Os04g0498900 Oryza sativa ssp. japonica HOM05D003781 ORTHO05D004299 8.7e-60 235.0 348 43.4
HPP92_023079 Vanilla planifolia HOM05D003781 ORTHO05D004299 8.7e-60 235.0 361 39.9
Gohir.A09G134500 Gossypium hirsutum HOM05D003781 ORTHO05D004299 1.9e-59 233.8 353 40.8
BcaC01g01091 Brassica carinata HOM05D003781 ORTHO05D004299 4.3e-59 232.6 220 53.2
Zm00001eb078390 Zea mays HOM05D003781 ORTHO05D004299 1.6e-58 230.7 270 46.3
Zm00001eb078410 Zea mays HOM05D003781 ORTHO05D004299 1.6e-58 230.7 270 46.3
Zm00001eb078400 Zea mays HOM05D003781 ORTHO05D004299 4.8e-58 229.2 270 46.3
BolC3t21111H Brassica oleracea HOM05D003781 ORTHO05D004299 8.2e-58 228.4 267 49.1
Nitab4.5_0002858g0040 Nicotiana tabacum HOM05D003781 ORTHO05D004299 2.0e-56 223.8 310 44.5
PSO675G6385 Papaver somniferum HOM05D003781 ORTHO05D004299 1.4e-54 217.6 246 48.4
vmacro10320 Vaccinium macrocarpon HOM05D003781 ORTHO05D004299 1.9e-54 217.2 229 49.8
SEGI_09697 Sequoiadendron giganteum HOM05D003781 ORTHO05D004299 1.9e-51 207.2 429 33.3
Lj1A1051T45 Lonicera japonica HOM05D003781 ORTHO05D004299 2.2e-50 203.8 230 47.8
Nitab4.5_0008187g0010 Nicotiana tabacum HOM05D003781 ORTHO05D004299 4.8e-50 202.6 352 38.1
CSS0029856 Camellia sinensis var. sinensis HOM05D003781 ORTHO05D004299 6.3e-50 202.2 311 41.2
BcaNung01523 Brassica carinata HOM05D003781 ORTHO05D004299 5.0e-47 192.6 311 40.2
ATR1127G225 Amborella trichopoda HOM05D003781 ORTHO05D004299 1.4e-46 191.0 317 38.5
Pp3c11_11100 Physcomitrium patens HOM05D003781 ORTHO05D004299 1.0e-44 184.9 295 40.7
THA.LOC104816619 Tarenaya hassleriana HOM05D003781 ORTHO05D004299 2.6e-43 180.3 218 47.2
Cc02_g09440 Coffea canephora HOM05D003781 ORTHO05D004299 1.8e-41 174.1 262 42.4
SMO367G1200 Selaginella moellendorffii HOM05D003781 ORTHO05D004299 3.4e-40 169.9 324 34.9
AUR62040627 Chenopodium quinoa HOM05D003781 ORTHO05D004299 8.5e-39 165.2 220 41.8
Sc07g0006420 Simmondsia chinensis HOM05D003781 ORTHO05D004299 4.8e-34 149.4 122 55.7
RhsimUnG0138400 Rhododendron simsii HOM05D003781 ORTHO05D004299 4.5e-32 142.9 178 47.2
SMO343G0088 Selaginella moellendorffii HOM05D003781 ORTHO05D004299 1.0e-31 141.7 250 36.0
TPR.G33838 Trifolium pratense HOM05D003781 ORTHO05D004299 3.6e-29 133.3 164 47.6
HanXRQChr15g0472861 Helianthus annuus HOM05D003781 ORTHO05D004299 2.0e-27 127.5 162 41.4
HanXRQChr03g0072391 Helianthus annuus HOM05D003781 ORTHO05D004299 4.8e-26 122.9 177 41.8
ATR0772G001 Amborella trichopoda HOM05D003781 ORTHO05D004299 1.1e-25 121.7 161 45.3
AagrBONN_evm.TU.Sc2ySwM_228.4048 Anthoceros agrestis HOM05D003781 ORTHO05D004299 3.1e-25 120.2 153 40.5
AL1G32760 Arabidopsis lyrata HOM05D003781 ORTHO05D004299 3.1e-25 120.2 144 45.1
Actinidia06046 Actinidia chinensis HOM05D003781 ORTHO05D004299 1.7e-23 114.4 153 46.4
Mapoly0033s0057 Marchantia polymorpha HOM05D003781 ORTHO05D004299 2.2e-23 114.0 144 42.4
SGA_v2.0_scaffold31G12848 Striga asiatica HOM05D003781 ORTHO05D004299 2.1e-21 107.5 198 37.4
PRCOL_00001992 Prasinoderma coloniale HOM05D003781 ORTHO05D004299 1.8e-20 104.4 283 29.0
MD10G1054000 Malus domestica HOM05D003781 ORTHO05D004299 2.3e-20 104.0 137 40.9
QL07p036300 Quercus lobata HOM05D001729 ORTHO05D001155 2.0e-19 100.9 212 34.9
EL10Ac6g14086 Beta vulgaris HOM05D003781 ORTHO05D004299 1.7e-18 97.8 75 56.0
TAR629G3109 Trochodendron aralioides HOM05D003781 ORTHO05D004299 2.9e-15 87.0 103 48.5
Lsat_1_v5_gn_1_27721 Lactuca sativa HOM05D003781 ORTHO05D004299 8.6e-15 85.5 115 40.9
Gorai.005G179000 Gossypium raimondii HOM05D003781 ORTHO05D004299 7.2e-14 82.4 78 48.7
Gohir.D04G105401 Gossypium hirsutum HOM05D003781 ORTHO05D004299 9.5e-14 82.0 78 48.7
TPR.G742 Trifolium pratense HOM05D003781 ORTHO05D004299 4.7e-13 79.7 77 51.9
Cre12.g542400 Chlamydomonas reinhardtii HOM05D003781 ORTHO05D004299 6.8e-12 75.9 116 37.1
CBR_g53498 Chara braunii HOM05D003781 ORTHO05D004299 7.5e-11 72.4 78 50.0
CBR_g53714 Chara braunii HOM05D003781 ORTHO05D004299 1.3e-10 71.6 170 27.6
MCO12G060 Micromonas commoda HOM05D003781 ORTHO05D004299 5.4e-09 66.2 292 24.3


User provided reference genes

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