Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0026408 Sechium edule HOM05D004054 ORTHO05D004945 0.0e+00 1646.3 848 100.0
ClCG05G024580 Citrullus lanatus HOM05D004054 ORTHO05D004945 0.0e+00 1401.3 867 83.3
CsaV3_5G032370 Cucumis sativus L. HOM05D004054 ORTHO05D004945 0.0e+00 1372.1 849 84.1
MELO3C012068.2 Cucumis melo HOM05D004054 ORTHO05D004945 0.0e+00 1317.0 827 83.3
Cfa009037 Carpinus fangiana HOM05D004054 ORTHO05D004945 5.2e-311 1070.8 870 65.7
QL03p065666 Quercus lobata HOM05D004054 ORTHO05D004945 4.8e-309 1064.3 864 64.8
Haze_12066 Corylus avellana HOM05D004054 ORTHO05D004945 1.5e-297 1026.2 973 59.0
Thecc.02G355300 Theobroma cacao HOM05D004054 ORTHO05D004945 6.6e-290 1000.7 861 63.9
TAR362G0462 Trochodendron aralioides HOM05D004054 ORTHO05D004945 1.1e-287 993.4 875 61.7
MD13G1079000 Malus domestica HOM05D004054 ORTHO05D004945 3.7e-285 984.9 873 62.8
Ciclev10030693m.g Citrus clementina HOM05D004054 ORTHO05D004945 1.1e-284 983.4 865 62.0
Gorai.013G077900 Gossypium raimondii HOM05D004054 ORTHO05D004945 1.4e-284 983.0 865 61.6
Duzib268G1532 Durio zibethinus HOM05D004054 ORTHO05D004945 2.1e-283 979.2 872 62.4
Gohir.A13G052300 Gossypium hirsutum HOM05D004054 ORTHO05D004945 5.1e-282 974.5 864 61.2
Gohir.D13G068400 Gossypium hirsutum HOM05D004054 ORTHO05D004945 3.3e-281 971.8 865 61.3
COL.COLO4_07923 Corchorus olitorius HOM05D004054 ORTHO05D004945 1.4e-279 966.5 862 62.6
TWI36G0714 Tripterygium wilfordii HOM05D004054 ORTHO05D004945 2.0e-278 962.6 853 61.1
Prupe.1G267800 Prunus persica HOM05D004054 ORTHO05D004945 2.9e-277 958.7 875 62.4
FAN17G1509 Fragaria x ananassa HOM05D004054 ORTHO05D004945 4.9e-277 958.0 872 60.7
RcHm_v2.0_Chr4g0440641 Rosa chinensis HOM05D004054 ORTHO05D004945 4.9e-277 958.0 863 61.2
FAN12G3951 Fragaria x ananassa HOM05D004054 ORTHO05D004945 6.4e-277 957.6 872 60.9
FvH4_4g31960 Fragaria vesca HOM05D004054 ORTHO05D004945 8.4e-277 957.2 872 60.7
Actinidia05393 Actinidia chinensis HOM05D004054 ORTHO05D004945 2.4e-276 955.7 862 60.8
FAN22G1878 Fragaria x ananassa HOM05D004054 ORTHO05D004945 1.2e-275 953.4 881 60.4
RcHm_v2.0_Chr1g0353921 Rosa chinensis HOM05D004054 ORTHO05D004945 4.6e-275 951.4 861 61.3
Rhsim01G0215700 Rhododendron simsii HOM05D004054 ORTHO05D004945 1.5e-273 946.4 879 60.2
Atru.chr11.1851 Acer truncatum HOM05D004054 ORTHO05D004945 4.3e-273 944.9 862 61.1
GSVIVG01036940001 Vitis vinifera HOM05D004054 ORTHO05D004945 5.6e-273 944.5 851 60.3
MD16G1078700 Malus domestica HOM05D004054 ORTHO05D004945 1.2e-272 943.3 769 66.2
RcHm_v2.0_Chr1g0331881 Rosa chinensis HOM05D004054 ORTHO05D004945 1.1e-271 940.3 862 61.1
FAN07G1439 Fragaria x ananassa HOM05D004054 ORTHO05D004945 1.3e-269 933.3 883 59.5
Ca_22853_v3 Cicer arietinum L. HOM05D004054 ORTHO05D004945 2.7e-267 925.6 879 59.2
Potri.010G033900 Populus trichocarpa HOM05D004054 ORTHO05D004945 1.3e-266 923.3 865 61.0
PGR102G2139 Punica granatum HOM05D004054 ORTHO05D004945 1.7e-266 922.9 871 58.8
Duzib248G1634 Durio zibethinus HOM05D004054 ORTHO05D004945 4.8e-264 914.8 869 59.6
GSVIVG01020074001 Vitis vinifera HOM05D004054 ORTHO05D004945 2.4e-263 912.5 875 58.4
Lj4g0012636 Lotus japonicus HOM05D004054 ORTHO05D004945 2.9e-261 905.6 866 58.3
Medtr8g469270 Medicago truncatula HOM05D004054 ORTHO05D004945 2.4e-260 902.5 874 58.1
Glyma.08G296300 Glycine max HOM05D004054 ORTHO05D004945 3.2e-260 902.1 879 58.8
Aqoxy5G00175 Aquilegia oxysepala HOM05D004054 ORTHO05D004945 7.1e-260 901.0 867 57.1
Glyma.18G126000 Glycine max HOM05D004054 ORTHO05D004945 2.1e-259 899.4 881 57.8
MBI11_g00106_MAGBIO Magnolia biondii HOM05D004054 ORTHO05D004945 3.5e-259 898.7 881 55.7
Gorai.008G182900 Gossypium raimondii HOM05D004054 ORTHO05D004945 2.3e-258 896.0 863 58.7
VMungo0251G1664 Vigna mungo HOM05D004054 ORTHO05D004945 1.9e-257 892.9 877 57.9
Lalb_Chr16g0392581 Lupinus albus HOM05D004054 ORTHO05D004945 5.6e-257 891.3 886 57.2
Phvul.003G069800 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 9.6e-257 890.6 879 57.5
MBI17_g39912_MAGBIO Magnolia biondii HOM05D004054 ORTHO05D004945 1.3e-256 890.2 859 56.7
arahy.Tifrunner.gnm1.ann1.K6PP8H Arachis hypogaea HOM05D004054 ORTHO05D004945 2.8e-256 889.0 870 58.2
TPR.G33257 Trifolium pratense HOM05D004054 ORTHO05D004945 1.4e-255 886.7 884 57.7
Gohir.D12G170300 Gossypium hirsutum HOM05D004054 ORTHO05D004945 1.2e-254 883.6 826 59.4
Carub.0003s1763 Capsella rubella HOM05D004054 ORTHO05D004945 5.8e-254 881.3 856 56.8
Sabra10G0030700 Salix brachista HOM05D004054 ORTHO05D004945 1.3e-253 880.2 916 56.9
CSS0048330 Camellia sinensis var. sinensis HOM05D004054 ORTHO05D004945 8.4e-253 877.5 846 58.3
Eucgr.B03410 Eucalyptus grandis HOM05D004054 ORTHO05D004945 1.2e-251 873.6 867 56.9
Peaxi162Scf00209g00326 Petunia axillaris HOM05D004054 ORTHO05D004945 1.2e-251 873.6 895 54.5
Psat4g132120 Pisum sativum HOM05D004054 ORTHO05D004945 3.9e-250 868.6 880 56.8
AL3G31070 Arabidopsis lyrata HOM05D004054 ORTHO05D004945 2.5e-249 865.9 857 55.7
AT3G17900 Arabidopsis thaliana HOM05D004054 ORTHO05D004945 9.6e-249 864.0 860 55.9
Thhalv10020058m.g Eutrema salsugineum HOM05D004054 ORTHO05D004945 1.2e-246 857.1 858 55.9
Manes.05G096500 Manihot esculenta HOM05D004054 ORTHO05D004945 2.0e-246 856.3 743 65.1
Hma1.2p1_1545F.1_g289900 Hydrangea macrophylla HOM05D004054 ORTHO05D004945 5.8e-246 854.7 754 61.1
vmacro07429 Vaccinium macrocarpon HOM05D004054 ORTHO05D004945 5.8e-246 854.7 951 53.8
Lsat_1_v5_gn_8_54080 Lactuca sativa HOM05D004054 ORTHO05D004945 1.0e-245 854.0 875 55.0
Sp3g16020 Schrenkiella parvula HOM05D004054 ORTHO05D004945 1.3e-245 853.6 859 55.4
PSO832G3945 Papaver somniferum HOM05D004054 ORTHO05D004945 2.9e-245 852.4 881 54.6
CARHR093230 Cardamine hirsuta HOM05D004054 ORTHO05D004945 1.4e-244 850.1 855 55.4
Sopen05g002990 Solanum pennellii HOM05D004054 ORTHO05D004945 9.3e-244 847.4 868 55.3
Dinv24955 Davidia involucrata HOM05D004054 ORTHO05D004945 2.7e-243 845.9 720 64.0
Sc11g0001680 Simmondsia chinensis HOM05D004054 ORTHO05D004945 7.4e-241 837.8 871 55.1
Nitab4.5_0009649g0020 Nicotiana tabacum HOM05D004054 ORTHO05D004945 9.0e-239 830.9 846 55.3
Cc11_g13490 Coffea canephora HOM05D004054 ORTHO05D004945 2.9e-237 825.9 874 54.3
THA.LOC104820344 Tarenaya hassleriana HOM05D004054 ORTHO05D004945 2.9e-237 825.9 856 54.3
Aa31LG8G4770 Aethionema arabicum HOM05D004054 ORTHO05D004945 2.1e-235 819.7 906 51.1
ECA247G4086 Erigeron canadensis HOM05D004054 ORTHO05D004945 2.3e-234 816.2 861 53.7
Oeu011693.1 Olea europaea HOM05D004054 ORTHO05D004945 5.1e-234 815.1 788 57.2
Lalb_Chr09g0335271 Lupinus albus HOM05D004054 ORTHO05D004945 8.7e-234 814.3 794 57.7
Glyma.02G021900 Glycine max HOM05D004054 ORTHO05D004945 1.1e-233 813.9 864 54.5
DCAR_027382 Daucus carota HOM05D004054 ORTHO05D004945 9.7e-233 810.8 867 53.4
PSO764G0096 Papaver somniferum HOM05D004054 ORTHO05D004945 1.3e-232 810.4 882 52.7
BcaB04g20809 Brassica carinata HOM05D004054 ORTHO05D004945 1.6e-232 810.1 859 53.9
Nitab4.5_0008717g0030 Nicotiana tabacum HOM05D004054 ORTHO05D004945 2.2e-232 809.7 847 54.7
Psat2g124400 Pisum sativum HOM05D004054 ORTHO05D004945 8.2e-232 807.7 863 53.1
A01p36490 Brassica napus HOM05D004054 ORTHO05D004945 1.1e-231 807.4 856 54.4
Migut.L01344 Erythranthe guttata HOM05D004054 ORTHO05D004945 1.5e-230 803.5 827 54.4
BraA03t13202Z Brassica rapa HOM05D004054 ORTHO05D004945 7.2e-228 794.7 864 54.1
Oeu028539.1 Olea europaea HOM05D004054 ORTHO05D004945 7.2e-228 794.7 858 52.0
C03p49280 Brassica napus HOM05D004054 ORTHO05D004945 9.4e-228 794.3 859 53.7
BraA01t03713Z Brassica rapa HOM05D004054 ORTHO05D004945 2.7e-227 792.7 855 53.7
BcaC09g48754 Brassica carinata HOM05D004054 ORTHO05D004945 4.6e-227 792.0 854 53.3
C01p46250 Brassica napus HOM05D004054 ORTHO05D004945 1.4e-226 790.4 855 53.6
BolC1t04586H Brassica oleracea HOM05D004054 ORTHO05D004945 3.9e-226 788.9 855 53.6
SalBow2G0733 Salvia bowleyana HOM05D004054 ORTHO05D004945 3.3e-225 785.8 954 49.3
BolC3t17216H Brassica oleracea HOM05D004054 ORTHO05D004945 5.7e-225 785.0 857 53.4
SGA_v2.0_scaffold302G47866 Striga asiatica HOM05D004054 ORTHO05D004945 7.4e-225 784.6 871 52.2
MSTRG.671 Avicennia marina HOM05D004054 ORTHO05D004945 6.9e-223 778.1 790 54.8
AUR62026447 Chenopodium quinoa HOM05D004054 ORTHO05D004945 9.1e-223 777.7 856 52.6
Ca_04741_v3 Cicer arietinum L. HOM05D004054 ORTHO05D004945 3.4e-222 775.8 837 52.2
Hund25271 Selenicereus undatus HOM05D004054 ORTHO05D004945 3.4e-222 775.8 842 53.1
HanXRQChr12g0369801 Helianthus annuus HOM05D004054 ORTHO05D004945 1.3e-221 773.9 861 52.6
BcaB04g18970 Brassica carinata HOM05D004054 ORTHO05D004945 6.5e-221 771.5 858 53.0
Nn3g19739 Nelumbo nucifera HOM05D004054 ORTHO05D004945 1.2e-219 767.3 729 57.5
Lalb_Chr17g0340361 Lupinus albus HOM05D004054 ORTHO05D004945 1.2e-214 750.7 798 53.8
SalBow2G2854 Salvia bowleyana HOM05D004054 ORTHO05D004945 2.0e-214 750.0 1034 45.4
AUR62026254 Chenopodium quinoa HOM05D004054 ORTHO05D004945 1.7e-213 746.9 865 51.3
Medtr5g038440 Medicago truncatula HOM05D004054 ORTHO05D004945 1.6e-211 740.3 859 50.5
TPR.G13762 Trifolium pratense HOM05D004054 ORTHO05D004945 3.7e-208 729.2 788 53.0
BcaC01g03722 Brassica carinata HOM05D004054 ORTHO05D004945 1.8e-207 726.9 863 51.3
A03p40440 Brassica napus HOM05D004054 ORTHO05D004945 4.5e-206 722.2 736 56.2
CDE09G0195 Ceratophyllum demersum HOM05D004054 ORTHO05D004945 7.7e-206 721.5 890 47.4
ATR0564G248 Amborella trichopoda HOM05D004054 ORTHO05D004945 1.0e-205 721.1 879 48.8
Lj2g0020807 Lotus japonicus HOM05D004054 ORTHO05D004945 1.0e-202 711.1 724 54.8
Hund05913 Selenicereus undatus HOM05D004054 ORTHO05D004945 4.0e-202 709.1 819 50.1
Cpa.g.sc5.276 Carica papaya HOM05D004054 ORTHO05D004945 1.1e-199 701.0 549 67.2
HPP92_011033 Vanilla planifolia HOM05D004054 ORTHO05D004945 2.4e-199 699.9 872 48.6
Solyc05g007030.4 Solanum lycopersicum HOM05D004054 ORTHO05D004945 2.7e-198 696.4 603 60.9
EL10Ac6g13147 Beta vulgaris HOM05D004054 ORTHO05D004945 1.0e-197 694.5 864 49.1
arahy.Tifrunner.gnm1.ann1.S53SYG Arachis hypogaea HOM05D004054 ORTHO05D004945 2.0e-190 670.2 781 49.9
Gohir.A12G166800 Gossypium hirsutum HOM05D004054 ORTHO05D004945 8.6e-181 638.3 548 62.6
Zm00001eb409770 Zea mays HOM05D004054 ORTHO05D004945 1.2e-179 634.4 878 46.1
arahy.Tifrunner.gnm1.ann1.B2D650 Arachis hypogaea HOM05D004054 ORTHO05D004945 6.2e-179 632.1 780 48.3
SEGI_39580 Sequoiadendron giganteum HOM05D004054 ORTHO05D004945 1.0e-178 631.3 920 43.0
VMungo1215G1372 Vigna mungo HOM05D004054 ORTHO05D004945 4.4e-169 599.4 1112 37.6
Lsat_1_v5_gn_4_9281 Lactuca sativa HOM05D004054 ORTHO05D004945 8.6e-165 585.1 816 44.5
Nn1g02896 Nelumbo nucifera HOM05D004054 ORTHO05D004945 1.9e-164 583.9 873 42.7
CiPaw.06G080700 Carya illinoinensis HOM05D004054 ORTHO05D004945 9.9e-161 571.6 452 66.6
unitig_22.g6528 Utricularia gibba HOM05D004054 ORTHO05D004945 1.3e-157 561.2 874 42.1
ECA234G1496 Erigeron canadensis HOM05D004054 ORTHO05D004945 3.4e-153 546.6 822 41.6
CDE02G2379 Ceratophyllum demersum HOM05D004054 ORTHO05D004945 7.1e-151 538.9 735 43.1
Phvul.002G066700 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 1.2e-145 521.5 580 51.7
Ah.03g132020 Amaranthus hybridus HOM05D004054 ORTHO05D004945 3.5e-142 510.0 494 56.9
HanXRQChr03g0092771 Helianthus annuus HOM05D004054 ORTHO05D004945 1.0e-141 508.4 750 42.7
Mapoly0224s0002 Marchantia polymorpha HOM05D004054 ORTHO05D004945 1.8e-122 444.5 835 36.4
Zm00001eb066230 Zea mays HOM05D004054 ORTHO05D004945 8.5e-120 435.6 588 47.4
unitig_8.g3947 Utricularia gibba HOM05D004054 ORTHO05D004945 9.7e-108 395.6 548 44.0
Pp3c16_680 Physcomitrium patens HOM05D004054 ORTHO05D004945 2.3e-101 374.4 795 34.5
CiPaw.06G080600 Carya illinoinensis HOM05D004054 ORTHO05D004945 3.3e-100 370.5 364 58.5
SMO119G0368 Selaginella moellendorffii HOM05D004054 ORTHO05D004945 2.8e-91 340.9 624 35.3
Psat0s2845g0120 Pisum sativum HOM05D004054 ORTHO05D004945 4.1e-90 337.0 439 46.9
AagrBONN_evm.TU.Sc2ySwM_228.4114 Anthoceros agrestis HOM05D004054 ORTHO05D004945 4.1e-82 310.5 721 33.1
Potri.008G194566 Populus trichocarpa HOM05D004054 ORTHO05D004945 1.0e-80 305.8 265 61.9
Cpa.g.sc5.277 Carica papaya HOM05D004054 ORTHO05D004945 1.1e-74 285.8 316 53.2
Phvul.002G066500 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 4.3e-63 247.3 282 51.8
Potri.008G194632 Populus trichocarpa HOM05D004054 ORTHO05D004945 2.9e-59 234.6 195 66.7
Gohir.A12G166900 Gossypium hirsutum HOM05D004054 ORTHO05D004945 9.9e-52 209.5 250 53.6
MSTRG.2359 Avicennia marina HOM05D004054 ORTHO05D004945 9.9e-44 183.0 173 57.2
RcHm_v2.0_Chr1g0331861 Rosa chinensis HOM05D004054 ORTHO05D004945 1.0e-32 146.4 138 58.7
C02p33030 Brassica napus HOM05D004054 ORTHO05D004945 3.3e-31 141.4 386 31.1
C03p36410 Brassica napus HOM05D004054 ORTHO05D004945 7.6e-28 130.2 387 31.3
BolC3t15954H Brassica oleracea HOM05D004054 ORTHO05D004945 7.6e-28 130.2 387 31.3
CBR_g39858 Chara braunii HOM05D004054 ORTHO05D009492 2.8e-22 111.7 365 26.3
A05p04500 Brassica napus HOM05D004054 ORTHO05D004945 1.4e-21 109.4 184 38.0
C03p62480 Brassica napus HOM05D004054 ORTHO05D004945 1.4e-21 109.4 184 38.0
C06p17170 Brassica napus HOM05D004054 ORTHO05D004945 4.5e-20 104.4 179 41.3
Lalb_Chr17g0340371 Lupinus albus HOM05D004054 ORTHO05D004945 1.0e-16 93.2 60 80.0
CAN.G793.43 Capsicum annuum HOM05D004054 ORTHO05D004945 3.0e-16 91.7 173 42.2
A01p41860 Brassica napus HOM05D004054 ORTHO05D004945 3.3e-15 88.2 104 47.1
PGSC0003DMG402017622 Solanum tuberosum HOM05D004054 ORTHO05D004945 3.3e-15 88.2 106 44.3
C08p43480 Brassica napus HOM05D004054 ORTHO05D004945 8.2e-14 83.6 132 39.4
BcaC08g44394 Brassica carinata HOM05D004054 ORTHO05D004945 1.8e-13 82.4 175 36.6
BolC3t18505H Brassica oleracea HOM05D004054 ORTHO05D004945 6.9e-13 80.5 195 33.8
unitig_8.g3946 Utricularia gibba HOM05D004054 ORTHO05D004945 4.9e-11 74.3 105 36.2
Lsat_1_v5_gn_7_73540 Lactuca sativa HOM05D004054 ORTHO05D004945 9.3e-10 70.1 58 56.9
C06p10280 Brassica napus HOM05D011797 ORTHO05D012335 3.5e-09 68.2 48 75.0
Lsat_1_v5_gn_3_52120 Lactuca sativa HOM05D004054 ORTHO05D004945 6.0e-09 67.4 58 48.3
MBI09_g47007_MAGBIO Magnolia biondii HOM05D003023 ORTHO05D018021 1.1e-07 63.2 96 38.5
A06p30220 Brassica napus HOM05D003604 ORTHO05D004110 1.9e-07 62.4 76 48.7
CBR_g39853 Chara braunii HOM05D000019 ORTHO05D000002 3.3e-07 61.6 47 57.4
CBR_g39856 Chara braunii HOM05D000019 ORTHO05D000353 3.3e-07 61.6 218 25.2
Aqoxy4G02344 Aquilegia oxysepala HOM05D004054 ORTHO05D004945 9.7e-07 60.1 71 46.5
Lsat_1_v5_gn_5_60100 Lactuca sativa HOM05D004054 ORTHO05D036438 9.7e-07 60.1 85 45.9


User provided reference genes

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