Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0026400 Sechium edule HOM05D007771 ORTHO05D009850 1.5e-32 142.1 67 100.0
MELO3C014083.2 Cucumis melo HOM05D007771 ORTHO05D009850 2.8e-26 121.3 67 82.1
ClCG10G004130 Citrullus lanatus HOM05D007771 ORTHO05D009850 5.8e-24 113.6 65 78.5
Glyma.02G303200 Glycine max HOM05D007771 ORTHO05D009850 9.6e-19 96.3 68 67.6
Phvul.008G282400 Phaseolus vulgaris HOM05D007771 ORTHO05D009850 9.6e-19 96.3 68 66.2
LjContig00081g0001678 Lotus japonicus HOM05D007771 ORTHO05D009850 4.8e-18 94.0 68 64.7
arahy.Tifrunner.gnm1.ann1.29L1CF Arachis hypogaea HOM05D007771 ORTHO05D009850 5.3e-17 90.5 69 63.8
Glyma.14G010700 Glycine max HOM05D007771 ORTHO05D009850 5.3e-17 90.5 68 67.6
MD03G1039700 Malus domestica HOM05D007771 ORTHO05D009850 9.0e-17 89.7 70 62.9
arahy.Tifrunner.gnm1.ann1.0J0D7Z Arachis hypogaea HOM05D007771 ORTHO05D009850 1.2e-16 89.4 69 63.8
CiPaw.11G208800 Carya illinoinensis HOM05D007771 ORTHO05D009850 1.5e-16 89.0 64 62.5
Eucgr.F03660 Eucalyptus grandis HOM05D007771 ORTHO05D009850 2.6e-16 88.2 69 63.8
PGR083G2136 Punica granatum HOM05D007771 ORTHO05D009850 2.6e-16 88.2 67 61.2
RcHm_v2.0_Chr5g0075191 Rosa chinensis HOM05D007771 ORTHO05D009850 3.4e-16 87.8 66 62.1
Lalb_Chr17g0349031 Lupinus albus HOM05D007771 ORTHO05D009850 4.5e-16 87.4 69 63.8
arahy.Tifrunner.gnm1.ann1.YJMT2M Arachis hypogaea HOM05D007771 ORTHO05D009850 1.3e-15 85.9 72 61.1
CANSAT11G2411 Cannabis sativa HOM05D007771 ORTHO05D009850 1.7e-15 85.5 66 62.1
MD11G1040400 Malus domestica HOM05D007771 ORTHO05D009850 4.9e-15 84.0 70 60.0
Medtr5g096780 Medicago truncatula HOM05D007771 ORTHO05D009850 4.9e-15 84.0 68 61.8
QL08p001590 Quercus lobata HOM05D007771 ORTHO05D009850 4.9e-15 84.0 70 61.4
Gohir.D05G386700 Gossypium hirsutum HOM05D007771 ORTHO05D009850 6.4e-15 83.6 68 64.7
Potri.001G469401 Populus trichocarpa HOM05D007771 ORTHO05D009850 8.4e-15 83.2 73 56.2
TPR.G1243 Trifolium pratense HOM05D007771 ORTHO05D009850 8.4e-15 83.2 71 54.9
Cfa016941 Carpinus fangiana HOM05D007771 ORTHO05D009850 3.2e-14 81.3 64 59.4
Medtr5g096760 Medicago truncatula HOM05D007771 ORTHO05D009850 4.2e-14 80.9 68 61.8
Potri.005G061200 Populus trichocarpa HOM05D007771 ORTHO05D009850 4.2e-14 80.9 73 56.2
TAR627G1191 Trochodendron aralioides HOM05D007771 ORTHO05D009850 5.5e-14 80.5 67 61.2
Cc05_g15490 Coffea canephora HOM05D007771 ORTHO05D009850 9.3e-14 79.7 69 56.5
Potri.007G107500 Populus trichocarpa HOM05D007771 ORTHO05D009850 2.1e-13 78.6 67 56.7
Ciclev10010110m.g Citrus clementina HOM05D007771 ORTHO05D009850 4.6e-13 77.4 67 58.2
TWI39G0067 Tripterygium wilfordii HOM05D007771 ORTHO05D009850 7.9e-13 76.6 66 57.6
Atru.chr2.3846 Acer truncatum HOM05D007771 ORTHO05D009850 1.3e-12 75.9 65 58.5
Potri.011G166250 Populus trichocarpa HOM05D007771 ORTHO05D009850 1.3e-12 75.9 70 52.9
Thecc.07G005300 Theobroma cacao HOM05D007771 ORTHO05D009850 1.8e-12 75.5 70 58.6
HanXRQChr13g0409141 Helianthus annuus HOM05D007771 ORTHO05D009850 3.0e-12 74.7 68 58.8
MBI15_g00878_MAGBIO Magnolia biondii HOM05D007771 ORTHO05D009850 3.9e-12 74.3 69 53.6
BraA08t32092Z Brassica rapa HOM05D007771 ORTHO05D009850 5.1e-12 73.9 70 58.6
Thhalv10022324m.g Eutrema salsugineum HOM05D007771 ORTHO05D009850 5.1e-12 73.9 66 59.1
Gohir.A04G003000 Gossypium hirsutum HOM05D007771 ORTHO05D009850 5.1e-12 73.9 60 65.0
Gorai.009G453400 Gossypium raimondii HOM05D007771 ORTHO05D009850 5.1e-12 73.9 60 65.0
Manes.02G224000 Manihot esculenta HOM05D007771 ORTHO05D009850 5.1e-12 73.9 70 55.7
BcaC01g01562 Brassica carinata HOM05D007771 ORTHO05D009850 6.7e-12 73.6 70 57.1
A08p00340 Brassica napus HOM05D007771 ORTHO05D009850 6.7e-12 73.6 70 57.1
BolC3t21615H Brassica oleracea HOM05D007771 ORTHO05D009850 6.7e-12 73.6 70 57.1
Manes.05G206300 Manihot esculenta HOM05D007771 ORTHO05D009850 8.7e-12 73.2 67 55.2
C03p93160 Brassica napus HOM05D007771 ORTHO05D009850 1.1e-11 72.8 66 56.1
Sopen07g034140 Solanum pennellii HOM05D007771 ORTHO05D009850 1.1e-11 72.8 67 50.7
BcaB04g16929 Brassica carinata HOM05D007771 ORTHO05D009850 1.9e-11 72.0 70 55.7
Migut.H01728 Erythranthe guttata HOM05D007771 ORTHO05D009850 2.5e-11 71.6 66 51.5
HanXRQChr03g0077771 Helianthus annuus HOM05D007771 ORTHO05D009850 3.3e-11 71.2 66 59.1
BcaB06g25475 Brassica carinata HOM05D007771 ORTHO05D009850 5.6e-11 70.5 65 56.9
Carub.0003s1266 Capsella rubella HOM05D007771 ORTHO05D009850 5.6e-11 70.5 65 55.4
PGSC0003DMG400022153 Solanum tuberosum HOM05D007771 ORTHO05D009850 5.6e-11 70.5 65 50.8
CARHR045420 Cardamine hirsuta HOM05D007771 ORTHO05D009850 7.4e-11 70.1 65 55.4
Duzib268G1197 Durio zibethinus HOM05D007771 ORTHO05D009850 9.6e-11 69.7 70 52.9
AL3G25100 Arabidopsis lyrata HOM05D007771 ORTHO05D009850 2.8e-10 68.2 65 52.3
AL1G63820 Arabidopsis lyrata HOM05D007771 ORTHO05D009850 3.7e-10 67.8 69 50.7
AT3G13275 Arabidopsis thaliana HOM05D007771 ORTHO05D009850 3.7e-10 67.8 65 52.3
A03p38110 Brassica napus HOM05D004608 ORTHO05D006533 3.7e-10 67.8 65 52.3
C01p51800 Brassica napus HOM05D004608 ORTHO05D006533 3.7e-10 67.8 63 58.7
C03p46260 Brassica napus HOM05D007771 ORTHO05D009850 3.7e-10 67.8 65 50.8
A05p36330 Brassica napus HOM05D007771 ORTHO05D009850 4.8e-10 67.4 63 58.7
BcaC05g29197 Brassica carinata HOM05D007771 ORTHO05D009850 6.2e-10 67.0 62 53.2
C05p54690 Brassica napus HOM05D007771 ORTHO05D009850 6.2e-10 67.0 62 53.2
BolC3t16896H Brassica oleracea HOM05D007771 ORTHO05D009850 6.2e-10 67.0 65 50.8
BolC5t34139H Brassica oleracea HOM05D007771 ORTHO05D009850 6.2e-10 67.0 62 53.2
BraA05t22434Z Brassica rapa HOM05D007771 ORTHO05D009850 6.2e-10 67.0 60 58.3
Sp3g11480 Schrenkiella parvula HOM05D007771 ORTHO05D009850 6.2e-10 67.0 63 54.0
A01p40280 Brassica napus HOM05D004608 ORTHO05D006533 1.1e-09 66.2 65 55.4
BolC1t05126H Brassica oleracea HOM05D007771 ORTHO05D009850 1.1e-09 66.2 63 54.0
BraA01t04064Z Brassica rapa HOM05D004608 ORTHO05D006533 1.1e-09 66.2 65 55.4
FAN11G2649 Fragaria x ananassa HOM05D007771 ORTHO05D009850 1.1e-09 66.2 39 69.2
CARHR087900 Cardamine hirsuta HOM05D007771 ORTHO05D009850 3.1e-09 64.7 54 59.3
COL.COLO4_07761 Corchorus olitorius HOM05D007771 ORTHO05D009850 9.0e-09 63.2 55 61.8
Solyc07g065940.1 Solanum lycopersicum HOM05D007771 ORTHO05D009850 9.0e-09 63.2 61 49.2
Nn1g08434 Nelumbo nucifera HOM05D007771 ORTHO05D009850 1.2e-08 62.8 74 47.3
EL10Ac4g07508 Beta vulgaris HOM05D007771 ORTHO05D009850 4.5e-08 60.8 65 44.6
Os09g0480100 Oryza sativa ssp. japonica HOM05D007771 ORTHO05D009850 5.8e-08 60.5 63 47.6
CAN.G623.52 Capsicum annuum HOM05D007771 ORTHO05D009850 7.6e-08 60.1 38 68.4
HPP92_017988 Vanilla planifolia HOM05D007771 ORTHO05D009850 1.0e-07 59.7 67 49.3
BraA03t12964Z Brassica rapa HOM05D004608 ORTHO05D006533 2.9e-07 58.2 57 50.9
Carub.0001s4425 Capsella rubella HOM05D007771 ORTHO05D009850 2.9e-07 58.2 66 50.0
PGSC0003DMG400014434 Solanum tuberosum HOM05D007771 ORTHO05D009850 2.9e-07 58.2 65 47.7
HPP92_026702 Vanilla planifolia HOM05D007771 ORTHO05D009850 3.8e-07 57.8 67 47.8
Gohir.D13G133100 Gossypium hirsutum HOM05D007771 ORTHO05D009850 4.9e-07 57.4 49 57.1
Gohir.A13G130128 Gossypium hirsutum HOM05D007771 ORTHO05D009850 6.5e-07 57.0 68 47.1
EL10Ac4g09984 Beta vulgaris HOM05D007771 ORTHO05D009850 1.9e-06 55.5 36 69.4
Lalb_Chr04g0247701 Lupinus albus HOM05D007771 ORTHO05D009850 1.9e-06 55.5 39 64.1
DCAR_013772 Daucus carota HOM05D007771 ORTHO05D009850 2.5e-06 55.1 65 43.1
Gorai.013G149400 Gossypium raimondii HOM05D007771 ORTHO05D009850 2.5e-06 55.1 49 55.1


User provided reference genes

Program Settings