Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0026382 Sechium edule HOM05D003782 ORTHO05D004361 0.0e+00 1605.1 832 100.0
ClCG03G005890 Citrullus lanatus HOM05D003782 ORTHO05D004361 0.0e+00 1167.9 904 72.7
CsaV3_1G012120 Cucumis sativus L. HOM05D003782 ORTHO05D004361 0.0e+00 1154.0 882 72.9
Sed0005800 Sechium edule HOM05D003782 ORTHO05D004361 0.0e+00 1140.9 915 70.1
MELO3C002586.2 Cucumis melo HOM05D003782 ORTHO05D004361 8.1e-309 1063.5 956 65.0
Cfa000411 Carpinus fangiana HOM05D003782 ORTHO05D004361 4.3e-233 812.0 885 53.4
Haze_06504 Corylus avellana HOM05D003782 ORTHO05D004361 8.0e-232 807.7 877 53.5
QL05p039400 Quercus lobata HOM05D003782 ORTHO05D004361 6.2e-224 781.6 903 52.0
CiPaw.09G056900 Carya illinoinensis HOM05D003782 ORTHO05D004361 8.0e-224 781.2 894 51.7
CiPaw.10G046700 Carya illinoinensis HOM05D003782 ORTHO05D004361 1.1e-212 744.2 776 53.4
Hma1.2p1_0881F.1_g231940 Hydrangea macrophylla HOM05D003782 ORTHO05D004361 2.1e-208 729.9 912 50.0
Actinidia05612 Actinidia chinensis HOM05D003782 ORTHO05D004361 2.2e-205 719.9 894 50.2
GSVIVG01006449001 Vitis vinifera HOM05D003782 ORTHO05D004361 6.4e-205 718.4 909 49.4
Dinv07533 Davidia involucrata HOM05D003782 ORTHO05D004361 9.3e-204 714.5 888 49.7
Manes.17G043000 Manihot esculenta HOM05D003782 ORTHO05D004361 1.2e-203 714.1 906 49.8
Prupe.4G043300 Prunus persica HOM05D003782 ORTHO05D004361 7.3e-201 704.9 930 48.4
Glyma.13G181800 Glycine max HOM05D003782 ORTHO05D004361 2.1e-200 703.4 873 50.1
Potri.011G049300 Populus trichocarpa HOM05D003782 ORTHO05D004361 1.4e-199 700.7 897 49.2
CSS0005863 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 1.8e-199 700.3 890 49.4
MD10G1297100 Malus domestica HOM05D003782 ORTHO05D004361 2.4e-199 699.9 938 47.9
Manes.16G025200 Manihot esculenta HOM05D003782 ORTHO05D004361 2.0e-198 696.8 914 49.0
Lj4g0027811 Lotus japonicus HOM05D003782 ORTHO05D004361 1.7e-197 693.7 926 47.7
Potri.004G039900 Populus trichocarpa HOM05D003782 ORTHO05D004361 1.1e-196 691.0 898 49.2
Glyma.07G194500 Glycine max HOM05D003782 ORTHO05D004361 2.4e-196 689.9 886 49.7
arahy.Tifrunner.gnm1.ann1.1A97AW Arachis hypogaea HOM05D003782 ORTHO05D004361 1.1e-193 681.0 891 48.4
arahy.Tifrunner.gnm1.ann1.2GZF7Z Arachis hypogaea HOM05D003782 ORTHO05D004361 2.5e-193 679.9 892 48.9
Lalb_Chr05g0218361 Lupinus albus HOM05D003782 ORTHO05D004361 5.6e-193 678.7 897 48.3
CANSAT35G1194 Cannabis sativa HOM05D003782 ORTHO05D004361 9.6e-193 677.9 909 48.6
Ciclev10014178m.g Citrus clementina HOM05D003782 ORTHO05D004361 2.8e-192 676.4 963 46.4
MD05G1316600 Malus domestica HOM05D003782 ORTHO05D004361 6.2e-192 675.2 943 45.8
Sabra11G0033700 Salix brachista HOM05D003782 ORTHO05D004361 8.1e-192 674.9 910 48.0
Thecc.06G191300 Theobroma cacao HOM05D003782 ORTHO05D004361 1.8e-191 673.7 905 48.6
Atru.chr10.1947 Acer truncatum HOM05D003782 ORTHO05D004361 3.1e-191 672.9 942 47.6
Phvul.002G226800 Phaseolus vulgaris HOM05D003782 ORTHO05D004361 1.2e-190 671.0 873 48.8
CSS0007425 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 1.6e-187 660.6 868 48.5
VMungo0251G3691 Vigna mungo HOM05D003782 ORTHO05D004361 1.6e-187 660.6 875 48.5
Cc02_g13030 Coffea canephora HOM05D003782 ORTHO05D004361 2.3e-186 656.8 880 47.8
RcHm_v2.0_Chr5g0007891 Rosa chinensis HOM05D003782 ORTHO05D004361 3.0e-186 656.4 925 46.1
vmacro03847 Vaccinium macrocarpon HOM05D003782 ORTHO05D004361 1.5e-185 654.1 981 44.5
Lalb_Chr09g0327561 Lupinus albus HOM05D003782 ORTHO05D004361 4.3e-185 652.5 893 46.6
Duzib160G0524 Durio zibethinus HOM05D003782 ORTHO05D004361 9.6e-185 651.4 899 47.3
FAN11G2511 Fragaria x ananassa HOM05D003782 ORTHO05D004361 1.6e-184 650.6 967 44.6
TPR.G12054 Trifolium pratense HOM05D003782 ORTHO05D004361 2.1e-184 650.2 963 44.4
TAR624G0538 Trochodendron aralioides HOM05D003782 ORTHO05D003724 1.8e-183 647.1 799 50.1
Sc05g0007840 Simmondsia chinensis HOM05D003782 ORTHO05D004361 2.6e-182 643.3 950 44.9
FAN21G1192 Fragaria x ananassa HOM05D003782 ORTHO05D004361 2.2e-181 640.2 964 43.6
FvH4_3g04800 Fragaria vesca HOM05D003782 ORTHO05D004361 6.5e-181 638.6 964 44.0
FAN16G0824 Fragaria x ananassa HOM05D003782 ORTHO05D004361 1.1e-180 637.9 973 43.5
Medtr4g089015 Medicago truncatula HOM05D003782 ORTHO05D004361 1.2e-179 634.4 967 44.3
FAN25G2149 Fragaria x ananassa HOM05D003782 ORTHO05D004361 3.5e-179 632.9 973 44.2
DCAR_008048 Daucus carota HOM05D003782 ORTHO05D004361 1.8e-178 630.6 807 48.5
Gohir.A06G125300 Gossypium hirsutum HOM05D003782 ORTHO05D004361 2.3e-178 630.2 916 46.1
Gohir.D06G130600 Gossypium hirsutum HOM05D003782 ORTHO05D004361 2.3e-178 630.2 914 46.6
TWI38G1173 Tripterygium wilfordii HOM05D003782 ORTHO05D004361 6.7e-178 628.6 900 45.6
MBI17_g03751_MAGBIO Magnolia biondii HOM05D003782 ORTHO05D004361 4.3e-177 625.9 896 45.4
PGR042G3934 Punica granatum HOM05D003782 ORTHO05D004361 4.3e-177 625.9 890 45.4
Nitab4.5_0011233g0010 Nicotiana tabacum HOM05D003782 ORTHO05D004361 4.0e-175 619.4 960 43.5
Psat7g113440 Pisum sativum HOM05D003782 ORTHO05D004361 2.0e-174 617.1 993 42.4
RhsimUnG0044200 Rhododendron simsii HOM05D003782 ORTHO05D004361 3.4e-174 616.3 1077 41.1
Eucgr.E03352 Eucalyptus grandis HOM05D003782 ORTHO05D004361 4.5e-174 615.9 777 47.7
Peaxi162Scf00379g00065 Petunia axillaris HOM05D003782 ORTHO05D004361 8.4e-173 611.7 847 46.4
Aqoxy4G01073 Aquilegia oxysepala HOM05D003782 ORTHO05D004361 5.5e-172 609.0 936 42.9
Solyc02g078560.4 Solanum lycopersicum HOM05D003782 ORTHO05D004361 1.6e-171 607.4 813 47.6
CAN.G1627.12 Capsicum annuum HOM05D003782 ORTHO05D004361 7.9e-171 605.1 874 45.9
Sopen02g023410 Solanum pennellii HOM05D003782 ORTHO05D004361 5.1e-170 602.4 796 48.0
Dinv40534 Davidia involucrata HOM05D003782 ORTHO05D004361 6.7e-170 602.1 718 50.8
Ca_18527_v3 Cicer arietinum L. HOM05D003782 ORTHO05D004361 7.4e-169 598.6 873 45.4
arahy.Tifrunner.gnm1.ann1.HPML60 Arachis hypogaea HOM05D003782 ORTHO05D004361 4.8e-168 595.9 844 45.6
Lsat_1_v5_gn_7_19080 Lactuca sativa HOM05D003782 ORTHO05D004361 6.3e-168 595.5 891 45.1
arahy.Tifrunner.gnm1.ann1.AS4EHM Arachis hypogaea HOM05D003782 ORTHO05D004361 1.1e-167 594.7 875 45.3
Gohir.A06G209800 Gossypium hirsutum HOM05D003782 ORTHO05D004361 1.8e-167 594.0 909 44.4
Lj6g0013812 Lotus japonicus HOM05D003782 ORTHO05D004361 1.2e-166 591.3 761 47.2
BraA06t23977Z Brassica rapa HOM05D003782 ORTHO05D004361 1.3e-165 587.8 880 44.7
Gorai.010G255000 Gossypium raimondii HOM05D003782 ORTHO05D004361 1.7e-165 587.4 910 44.2
MSTRG.14684 Avicennia marina HOM05D003782 ORTHO05D004361 5.0e-165 585.9 776 46.5
A06p07760 Brassica napus HOM05D003782 ORTHO05D004361 6.5e-165 585.5 880 44.7
CDE02G2556 Ceratophyllum demersum HOM05D003782 ORTHO05D004361 6.5e-165 585.5 905 43.9
CARHR011250 Cardamine hirsuta HOM05D003782 ORTHO05D004361 1.4e-164 584.3 882 44.4
Gohir.D06G211200 Gossypium hirsutum HOM05D003782 ORTHO05D004361 1.4e-164 584.3 910 44.0
HanXRQChr08g0209481 Helianthus annuus HOM05D003782 ORTHO05D004361 9.4e-164 581.6 900 44.0
C05p09350 Brassica napus HOM05D003782 ORTHO05D004361 1.2e-163 581.3 884 44.2
Gorai.010G152400 Gossypium raimondii HOM05D003782 ORTHO05D004361 6.1e-163 578.9 915 44.2
HanXRQChr04g0124181 Helianthus annuus HOM05D003782 ORTHO05D004361 1.8e-162 577.4 897 44.0
BcaC05g24980 Brassica carinata HOM05D003782 ORTHO05D004361 5.1e-162 575.9 785 45.7
Lj1C1208G1 Lonicera japonica HOM05D003782 ORTHO05D004361 1.1e-161 574.7 888 43.8
Migut.H01508 Erythranthe guttata HOM05D003782 ORTHO05D004361 1.5e-161 574.3 769 47.3
BolC5t29675H Brassica oleracea HOM05D003782 ORTHO05D004361 8.2e-160 568.5 909 42.9
Sp1g09750 Schrenkiella parvula HOM05D003782 ORTHO05D004361 8.2e-160 568.5 887 43.1
C08p48360 Brassica napus HOM05D003782 ORTHO05D004361 1.1e-159 568.2 881 43.5
BolC8t52375H Brassica oleracea HOM05D003782 ORTHO05D004361 1.1e-159 568.2 881 43.5
Thhalv10006765m.g Eutrema salsugineum HOM05D003782 ORTHO05D004361 3.1e-159 566.6 888 43.0
COL.COLO4_31507 Corchorus olitorius HOM05D003782 ORTHO05D004361 1.0e-157 561.6 1018 41.3
Hund23698 Selenicereus undatus HOM05D003782 ORTHO05D004361 1.3e-157 561.2 900 43.3
AL1G22040 Arabidopsis lyrata HOM05D003782 ORTHO05D004361 1.7e-157 560.8 897 42.3
EL10Ac8g20337 Beta vulgaris HOM05D003782 ORTHO05D004361 2.9e-157 560.1 796 46.2
Sp2g03490 Schrenkiella parvula HOM05D003782 ORTHO05D004361 3.8e-157 559.7 886 42.7
SGA_v2.0_scaffold49G18282 Striga asiatica HOM05D003782 ORTHO05D004361 1.4e-156 557.8 801 45.4
Nitab4.5_0003668g0120 Nicotiana tabacum HOM05D003782 ORTHO05D004361 1.2e-155 554.7 958 40.7
Ah.14g089260 Amaranthus hybridus HOM05D003782 ORTHO05D004361 1.8e-154 550.8 889 42.7
A09p64830 Brassica napus HOM05D003782 ORTHO05D004361 5.1e-154 549.3 947 40.9
Carub.0001s1062 Capsella rubella HOM05D003782 ORTHO05D004361 6.7e-154 548.9 878 42.7
AT1G11060 Arabidopsis thaliana HOM05D003782 ORTHO05D004361 1.1e-153 548.1 887 41.9
BraA09t41812Z Brassica rapa HOM05D003782 ORTHO05D004361 2.0e-153 547.4 947 40.4
Aa31LG1G3850 Aethionema arabicum HOM05D003782 ORTHO05D004361 5.7e-153 545.8 912 41.8
PSO210G1870 Papaver somniferum HOM05D003782 ORTHO05D004361 4.8e-152 542.7 1005 39.4
AUR62016973 Chenopodium quinoa HOM05D003782 ORTHO05D004361 5.3e-151 539.3 783 46.0
AUR62014785 Chenopodium quinoa HOM05D003782 ORTHO05D004361 9.1e-151 538.5 825 44.4
ATR0680G033 Amborella trichopoda HOM05D003782 ORTHO05D004361 2.0e-150 537.3 914 42.0
Lalb_Chr20g0122011 Lupinus albus HOM05D003782 ORTHO05D004361 5.9e-150 535.8 761 45.7
AT1G61030 Arabidopsis thaliana HOM05D003782 ORTHO05D004361 2.2e-149 533.9 884 41.4
Oeu014694.1 Olea europaea HOM05D003782 ORTHO05D004361 5.0e-149 532.7 803 43.3
AL2G15410 Arabidopsis lyrata HOM05D003782 ORTHO05D004361 6.5e-149 532.3 883 42.1
PSO832G0898 Papaver somniferum HOM05D003782 ORTHO05D004361 1.5e-148 531.2 1005 39.1
SalBow8G2382 Salvia bowleyana HOM05D003782 ORTHO05D004361 5.2e-146 522.7 826 43.1
Aa31LG2G9560 Aethionema arabicum HOM05D003782 ORTHO05D004361 2.0e-145 520.8 861 42.4
Carub.0002s0417 Capsella rubella HOM05D003782 ORTHO05D004361 2.0e-145 520.8 873 41.1
BcaC07g41789 Brassica carinata HOM05D003782 ORTHO05D004361 2.2e-144 517.3 910 41.5
SalBow7G0940 Salvia bowleyana HOM05D003782 ORTHO05D004361 2.6e-142 510.4 803 42.2
SalBow7G0271 Salvia bowleyana HOM05D003782 ORTHO05D004361 7.7e-142 508.8 803 42.1
HPP92_014533 Vanilla planifolia HOM05D003782 ORTHO05D004361 1.2e-139 501.5 891 39.6
Sabra04G0024600 Salix brachista HOM05D003782 ORTHO05D004361 2.3e-138 497.3 781 44.0
CARHR052160 Cardamine hirsuta HOM05D003782 ORTHO05D004361 2.0e-137 494.2 885 40.2
Os10g0497000 Oryza sativa ssp. japonica HOM05D003782 ORTHO05D004361 4.7e-131 473.0 805 40.2
Duzib235G1248 Durio zibethinus HOM05D003782 ORTHO05D004361 6.1e-131 472.6 882 40.7
Duzib192G0241 Durio zibethinus HOM05D003782 ORTHO05D004361 1.0e-125 455.3 886 39.8
Zm00001eb220930 Zea mays HOM05D003782 ORTHO05D004361 1.9e-124 451.1 785 39.7
Ah.09g235740 Amaranthus hybridus HOM05D003782 ORTHO05D004361 7.2e-124 449.1 879 39.0
unitig_26.g9369 Utricularia gibba HOM05D003782 ORTHO05D004361 8.9e-114 415.6 766 40.2
Migut.M01185 Erythranthe guttata HOM05D003782 ORTHO05D004361 1.4e-111 408.3 876 37.1
Pp3c9_20340 Physcomitrium patens HOM05D003782 ORTHO05D004361 2.9e-96 357.5 800 34.0
Pp3c9_20349 Physcomitrium patens HOM05D003782 ORTHO05D004361 2.9e-96 357.5 800 34.0
Mapoly0014s0099 Marchantia polymorpha HOM05D003782 ORTHO05D004361 1.4e-90 338.6 919 31.7
Zm00001eb044640 Zea mays HOM05D003782 ORTHO05D004361 2.2e-88 331.3 672 37.1
SMO169G0190 Selaginella moellendorffii HOM05D003782 ORTHO05D004361 7.1e-87 326.2 756 33.7
Aqoxy6G00197 Aquilegia oxysepala HOM05D003782 ORTHO05D004361 2.1e-86 324.7 328 53.7
ECA236G4595 Erigeron canadensis HOM05D003782 ORTHO05D004361 1.7e-85 321.6 526 42.2
Cpa.g.sc27.74 Carica papaya HOM05D003782 ORTHO05D004361 8.7e-77 292.7 356 50.3
Lj6g0001672 Lotus japonicus HOM05D003782 ORTHO05D004361 6.4e-72 276.6 372 48.4
Lj6g0027699 Lotus japonicus HOM05D003782 ORTHO05D004361 1.8e-61 241.9 240 53.3
CSS0036804 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 3.3e-60 237.7 375 43.7
SEGI_34470 Sequoiadendron giganteum HOM05D003782 ORTHO05D004361 9.6e-60 236.1 250 53.6
FAN07G0886 Fragaria x ananassa HOM05D003782 ORTHO05D004361 1.6e-59 235.3 291 46.4
CBR_g19729 Chara braunii HOM05D003782 ORTHO05D004361 1.3e-56 225.7 953 26.9
Oeu043706.1 Olea europaea HOM05D003782 ORTHO05D004361 1.7e-56 225.3 379 43.0
SHI01818 Sapria himalayana HOM05D003782 ORTHO05D004361 5.7e-52 210.3 447 36.9
Sabra04G0024500 Salix brachista HOM05D003782 ORTHO05D004361 2.0e-41 175.3 136 65.4
Cpa.g.sc27.75 Carica papaya HOM05D003782 ORTHO05D004361 3.3e-28 131.3 114 62.3
TWI12G0412 Tripterygium wilfordii HOM05D003782 ORTHO05D004361 1.4e-26 125.9 181 44.2
ECA236G3594 Erigeron canadensis HOM05D003782 ORTHO05D004361 2.4e-26 125.2 170 47.6
arahy.Tifrunner.gnm1.ann1.M5G8HU Arachis hypogaea HOM05D003782 ORTHO05D004361 3.5e-25 121.3 85 72.9
TWI12G0828 Tripterygium wilfordii HOM05D003782 ORTHO05D004361 5.5e-23 114.0 161 41.6
Zm00001eb006190 Zea mays HOM05D003782 ORTHO05D004361 5.5e-23 114.0 145 45.5
arahy.Tifrunner.gnm1.ann1.S76ADD Arachis hypogaea HOM05D001687 ORTHO05D001608 8.0e-22 110.2 79 72.2
FAN28G2813 Fragaria x ananassa HOM05D003782 ORTHO05D004361 1.4e-21 109.4 99 57.6
BcaC05g24978 Brassica carinata HOM05D003782 ORTHO05D004361 1.2e-20 106.3 183 43.7
SEGI_13110 Sequoiadendron giganteum HOM05D003782 ORTHO05D004361 2.6e-20 105.1 235 31.5
Zm00001eb335960 Zea mays HOM05D003782 ORTHO05D004361 1.4e-18 99.4 118 50.0
arahy.Tifrunner.gnm1.ann1.IMK82Y Arachis hypogaea HOM05D003782 ORTHO05D004361 2.4e-18 98.6 70 72.9
arahy.Tifrunner.gnm1.ann1.04J95Q Arachis hypogaea HOM05D003782 ORTHO05D004361 8.5e-16 90.1 111 48.6
MD09G1213100 Malus domestica HOM05D003782 ORTHO05D004361 1.1e-15 89.7 54 75.9
arahy.Tifrunner.gnm1.ann1.R5EEB5 Arachis hypogaea HOM05D003782 ORTHO05D004361 3.6e-14 84.7 52 75.0
Nn1g04009 Nelumbo nucifera HOM05D003782 ORTHO05D004361 6.8e-13 80.5 84 51.2
Zm00001eb432110 Zea mays HOM05D003782 ORTHO05D004361 6.8e-13 80.5 88 48.9
Glyma.04G160500 Glycine max HOM05D003782 ORTHO05D004361 1.2e-12 79.7 95 49.5
CSS0006007 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 1.5e-12 79.3 59 71.2
TAR626G0244 Trochodendron aralioides HOM05D003782 ORTHO05D004361 1.5e-12 79.3 61 65.6
ATR0561G103 Amborella trichopoda HOM05D003782 ORTHO05D004361 2.6e-12 78.6 125 36.8
Zm00001eb179180 Zea mays HOM05D003782 ORTHO05D004361 2.8e-11 75.1 88 46.6
Zm00001eb174580 Zea mays HOM05D003782 ORTHO05D004361 1.1e-10 73.2 65 58.5
QL05p013418 Quercus lobata HOM05D003782 ORTHO05D004361 7.0e-10 70.5 55 60.0
VMungo0251G1485 Vigna mungo HOM05D003782 ORTHO05D004361 9.2e-10 70.1 65 55.4
CARHR034020 Cardamine hirsuta HOM05D003782 ORTHO05D004361 1.0e-08 66.6 92 46.7
VMungo0331G2027 Vigna mungo HOM05D003782 ORTHO05D004361 2.3e-08 65.5 65 52.3
arahy.Tifrunner.gnm1.ann1.IG0W9M Arachis hypogaea HOM05D003782 ORTHO05D004361 7.3e-07 60.5 49 57.1
MCO02G174 Micromonas commoda HOM05D003782 ORTHO05D004361 1.2e-06 59.7 77 41.6
SHI01816 Sapria himalayana HOM05D005377 ORTHO05D003034 1.6e-06 59.3 72 45.8
TAR624G1003 Trochodendron aralioides HOM05D003782 ORTHO05D004361 1.6e-06 59.3 73 53.4


User provided reference genes

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