Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0026378 Sechium edule HOM05D004937 ORTHO05D006414 1.4e-226 789.3 406 100.0
MELO3C002448.2 Cucumis melo HOM05D004937 ORTHO05D006414 8.0e-193 677.2 418 83.5
CsaV3_1G010670 Cucumis sativus L. HOM05D004937 ORTHO05D006414 4.5e-188 661.4 418 81.1
Thecc.06G222700 Theobroma cacao HOM05D004937 ORTHO05D006414 2.6e-151 539.3 412 66.7
QL05p072835 Quercus lobata HOM05D004937 ORTHO05D006414 1.4e-149 533.5 419 66.8
COL.COLO4_31792 Corchorus olitorius HOM05D004937 ORTHO05D006414 1.2e-148 530.4 417 66.2
CiPaw.09G093200 Carya illinoinensis HOM05D004937 ORTHO05D006414 6.0e-148 528.1 414 66.2
GSVIVG01012711001 Vitis vinifera HOM05D004937 ORTHO05D000904 7.6e-143 511.1 414 63.3
Manes.16G005800 Manihot esculenta HOM05D004937 ORTHO05D006414 4.9e-142 508.4 440 61.1
Haze_06813 Corylus avellana HOM05D004937 ORTHO05D006414 6.4e-142 508.1 414 64.0
arahy.Tifrunner.gnm1.ann1.L1792D Arachis hypogaea HOM05D004937 ORTHO05D006414 1.2e-140 503.8 418 64.8
Gohir.D06G214000 Gossypium hirsutum HOM05D004937 ORTHO05D006414 1.2e-140 503.8 414 63.5
Gorai.010G252100 Gossypium raimondii HOM05D004937 ORTHO05D006414 1.2e-140 503.8 414 63.5
Potri.004G010400 Populus trichocarpa HOM05D004937 ORTHO05D006414 1.2e-140 503.8 479 57.4
Eucgr.D01342 Eucalyptus grandis HOM05D004937 ORTHO05D006414 2.7e-140 502.7 415 61.2
Cpa.g.sc152.26 Carica papaya HOM05D004937 ORTHO05D006414 2.3e-139 499.6 421 62.5
Ciclev10014440m.g Citrus clementina HOM05D004937 ORTHO05D006414 5.1e-139 498.4 406 63.3
TAR624G0274 Trochodendron aralioides HOM05D004937 ORTHO05D006414 1.9e-138 496.5 411 63.3
Gohir.A06G207300 Gossypium hirsutum HOM05D004937 ORTHO05D006414 3.3e-138 495.7 413 62.5
Glyma.07G261700 Glycine max HOM05D004937 ORTHO05D006414 4.3e-138 495.4 404 61.9
CSS0033735 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 5.6e-138 495.0 413 62.5
Lalb_Chr12g0196051 Lupinus albus HOM05D004937 ORTHO05D006414 7.3e-138 494.6 439 61.5
Sabra04G0005400 Salix brachista HOM05D004937 ORTHO05D006414 9.6e-138 494.2 497 57.1
CANSAT56G3877 Cannabis sativa HOM05D004937 ORTHO05D006414 2.8e-137 492.7 413 61.3
PGR042G1615 Punica granatum HOM05D004937 ORTHO05D006414 8.1e-137 491.1 422 63.5
TWI63G0901 Tripterygium wilfordii HOM05D004937 ORTHO05D006414 2.4e-136 489.6 434 59.9
Glyma.17G012400 Glycine max HOM05D004937 ORTHO05D006414 6.9e-136 488.0 410 61.5
Lj4g0022599 Lotus japonicus HOM05D004937 ORTHO05D006414 6.9e-136 488.0 425 60.5
MD10G1323300 Malus domestica HOM05D004937 ORTHO05D006414 1.2e-135 487.3 456 57.2
Phvul.003G080000 Phaseolus vulgaris HOM05D004937 ORTHO05D006414 5.8e-135 485.0 414 59.7
vmacro15793 Vaccinium macrocarpon HOM05D004937 ORTHO05D006414 9.9e-135 484.2 419 59.9
arahy.Tifrunner.gnm1.ann1.VWCB5J Arachis hypogaea HOM05D004937 ORTHO05D006414 2.9e-134 482.6 419 62.5
Peaxi162Scf00394g00019 Petunia axillaris HOM05D004937 ORTHO05D006414 2.9e-134 482.6 442 57.2
Prupe.4G019000 Prunus persica HOM05D004937 ORTHO05D006414 3.8e-134 482.3 440 58.6
Nn1g07169 Nelumbo nucifera HOM05D004937 ORTHO05D006414 1.1e-133 480.7 419 58.2
Aa31LG1G2970 Aethionema arabicum HOM05D004937 ORTHO05D006414 1.4e-133 480.3 418 60.5
Rhsim02G0106300 Rhododendron simsii HOM05D004937 ORTHO05D006414 5.4e-133 478.4 427 58.5
Peaxi162Scf00307g01425 Petunia axillaris HOM05D004937 ORTHO05D006414 2.1e-132 476.5 442 56.8
VMungo1215G2760 Vigna mungo HOM05D004937 ORTHO05D006414 2.1e-132 476.5 407 60.0
DCAR_024931 Daucus carota HOM05D004937 ORTHO05D006414 5.1e-131 471.9 414 58.0
Cc09_g01540 Coffea canephora HOM05D004937 ORTHO05D000904 3.3e-130 469.2 422 59.0
Lj1A1232T94 Lonicera japonica HOM05D004937 ORTHO05D006414 9.6e-130 467.6 425 56.9
AL1G22990 Arabidopsis lyrata HOM05D004937 ORTHO05D006414 1.6e-129 466.8 422 58.8
Medtr4g132300 Medicago truncatula HOM05D004937 ORTHO05D006414 1.6e-129 466.8 438 55.5
AT1G11800 Arabidopsis thaliana HOM05D004937 ORTHO05D006414 3.7e-129 465.7 423 59.1
Carub.0001s1147 Capsella rubella HOM05D004937 ORTHO05D006414 8.1e-129 464.5 420 57.9
BcaB08g37429 Brassica carinata HOM05D004937 ORTHO05D006414 3.1e-128 462.6 412 59.2
Thhalv10006713m.g Eutrema salsugineum HOM05D004937 ORTHO05D000904 5.3e-128 461.8 418 58.6
C08p47960 Brassica napus HOM05D004937 ORTHO05D006414 9.0e-128 461.1 409 58.4
CARHR012140 Cardamine hirsuta HOM05D004937 ORTHO05D006414 9.0e-128 461.1 422 57.6
BcaC07g41758 Brassica carinata HOM05D004937 ORTHO05D006414 1.5e-127 460.3 407 58.7
BraA09t41776Z Brassica rapa HOM05D004937 ORTHO05D006414 2.0e-127 459.9 412 57.3
BolC8t52333H Brassica oleracea HOM05D004937 ORTHO05D006414 2.6e-127 459.5 409 57.9
PSO541G5924 Papaver somniferum HOM05D004937 ORTHO05D006414 5.8e-127 458.4 424 59.2
PGSC0003DMG400019871 Solanum tuberosum HOM05D004937 ORTHO05D006414 1.3e-126 457.2 450 54.0
RcHm_v2.0_Chr5g0002731 Rosa chinensis HOM05D004937 ORTHO05D006414 1.7e-126 456.8 474 54.0
PSO675G1521 Papaver somniferum HOM05D004937 ORTHO05D006414 4.9e-126 455.3 424 58.5
Sopen02g011270 Solanum pennellii HOM05D004937 ORTHO05D006414 1.9e-125 453.4 449 54.1
A09p64340 Brassica napus HOM05D004937 ORTHO05D007797 1.2e-124 450.7 406 57.4
Sp1g10430 Schrenkiella parvula HOM05D004937 ORTHO05D006414 1.6e-124 450.3 416 57.0
Solyc02g032870.4 Solanum lycopersicum HOM05D004937 ORTHO05D006414 2.7e-124 449.5 449 53.9
Nitab4.5_0011734g0010 Nicotiana tabacum HOM05D004937 ORTHO05D006414 1.3e-123 447.2 455 53.4
FvH4_3g01860 Fragaria vesca HOM05D004937 ORTHO05D006414 2.3e-123 446.4 472 54.2
FAN21G0664 Fragaria x ananassa HOM05D004937 ORTHO05D006414 2.3e-123 446.4 472 54.4
Aqoxy1G02086 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 8.7e-123 444.5 485 49.9
PSO541G2704 Papaver somniferum HOM05D004937 ORTHO05D006414 8.7e-123 444.5 424 56.8
THA.LOC104809500 Tarenaya hassleriana HOM05D004937 ORTHO05D006414 8.7e-123 444.5 408 57.4
PSO675G7903 Papaver somniferum HOM05D004937 ORTHO05D006414 1.5e-122 443.7 424 56.6
Nitab4.5_0000005g0300 Nicotiana tabacum HOM05D004937 ORTHO05D006414 2.5e-122 443.0 459 52.9
MSTRG.15996 Avicennia marina HOM05D004937 ORTHO05D006414 9.6e-122 441.0 496 49.8
Sed0013617 Sechium edule HOM05D004937 ORTHO05D006414 1.3e-121 440.7 232 89.7
Lsat_1_v5_gn_7_16360 Lactuca sativa HOM05D004937 ORTHO05D006414 1.1e-120 437.6 420 56.4
DCAR_028195 Daucus carota HOM05D004937 ORTHO05D006414 1.4e-120 437.2 432 52.3
ECA236G0630 Erigeron canadensis HOM05D004937 ORTHO05D006414 2.4e-120 436.4 429 56.9
Migut.M01330 Erythranthe guttata HOM05D004937 ORTHO05D000904 9.0e-120 434.5 466 50.6
Sc24g0000210 Simmondsia chinensis HOM05D004937 ORTHO05D006414 1.5e-119 433.7 459 48.8
HPP92_001597 Vanilla planifolia HOM05D004937 ORTHO05D006414 2.6e-119 433.0 420 54.8
Hund23457 Selenicereus undatus HOM05D004937 ORTHO05D006414 5.8e-119 431.8 531 48.2
HanXRQChr15g0470651 Helianthus annuus HOM05D004937 ORTHO05D006414 7.6e-119 431.4 440 54.3
HPP92_001591 Vanilla planifolia HOM05D004937 ORTHO05D006414 2.2e-118 429.9 422 54.7
Psat4g006200 Pisum sativum HOM05D004937 ORTHO05D006414 1.5e-114 417.2 310 65.2
Hma1.2p1_3370F.1_g335650 Hydrangea macrophylla HOM05D004937 ORTHO05D006414 2.5e-114 416.4 402 58.5
EL10Ac8g20076 Beta vulgaris HOM05D004937 ORTHO05D006414 9.7e-114 414.5 528 46.0
SalBow8G2768 Salvia bowleyana HOM05D004937 ORTHO05D006414 1.8e-112 410.2 460 49.1
TPR.G22185 Trifolium pratense HOM05D004937 ORTHO05D006414 2.5e-109 399.8 281 68.7
Ca_21076_v3 Cicer arietinum L. HOM05D004937 ORTHO05D006414 9.4e-109 397.9 314 62.1
unitig_748.g7590 Utricularia gibba HOM05D004937 ORTHO05D006414 9.4e-109 397.9 418 49.8
AUR62021933 Chenopodium quinoa HOM05D004937 ORTHO05D006414 4.3e-106 389.0 527 45.2
HanXRQChr05g0129391 Helianthus annuus HOM05D004937 ORTHO05D006414 6.3e-105 385.2 293 63.8
SHI02217 Sapria himalayana HOM05D004937 ORTHO05D006414 4.5e-103 379.0 506 44.9
ATR0794G089 Amborella trichopoda HOM05D004937 ORTHO05D006414 1.4e-101 374.0 276 62.3
CDE02G2441 Ceratophyllum demersum HOM05D004937 ORTHO05D006414 1.4e-101 374.0 425 50.1
SEGI_33731 Sequoiadendron giganteum HOM05D004937 ORTHO05D006414 1.2e-100 370.9 286 61.2
ClCG03G004640 Citrullus lanatus HOM05D004937 ORTHO05D006414 6.1e-100 368.6 195 89.7
AUR62012723 Chenopodium quinoa HOM05D004937 ORTHO05D006414 1.4e-99 367.5 320 57.8
Os12g0414900 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 3.0e-99 366.3 441 45.1
Zm00001eb043220 Zea mays HOM05D004937 ORTHO05D006414 3.3e-98 362.8 268 61.6
QL05p072858 Quercus lobata HOM05D004937 ORTHO05D006414 7.4e-98 361.7 269 62.8
PSO017G1772 Papaver somniferum HOM05D004937 ORTHO05D006414 5.3e-96 355.5 283 61.1
Pp3c20_16850 Physcomitrium patens HOM05D004937 ORTHO05D006414 5.3e-96 355.5 328 54.3
Haze_06812 Corylus avellana HOM05D004937 ORTHO05D006414 7.7e-95 351.7 291 58.8
Mapoly0028s0073 Marchantia polymorpha HOM05D004937 ORTHO05D006414 2.2e-94 350.1 277 58.5
Ah.14g087960 Amaranthus hybridus HOM05D004937 ORTHO05D006414 1.4e-93 347.4 528 42.0
QL05p072840 Quercus lobata HOM05D004937 ORTHO05D006414 3.6e-92 342.8 271 60.9
Potri.004G010900 Populus trichocarpa HOM05D004937 ORTHO05D006414 6.1e-92 342.0 327 54.7
Dinv20060 Davidia involucrata HOM05D004937 ORTHO05D006414 6.7e-91 338.6 297 57.6
CBR_g38366 Chara braunii HOM05D004937 ORTHO05D006414 1.8e-88 330.5 294 55.1
SMO361G0593 Selaginella moellendorffii HOM05D004937 ORTHO05D006414 2.4e-88 330.1 267 60.3
Dinv13907 Davidia involucrata HOM05D004937 ORTHO05D006414 2.6e-87 326.6 288 53.5
AagrBONN_evm.TU.Sc2ySwM_368.2060 Anthoceros agrestis HOM05D004937 ORTHO05D006414 1.0e-83 314.7 247 61.5
ClCG03G004650 Citrullus lanatus HOM05D000020 ORTHO05D000904 5.2e-83 312.4 229 76.9
Migut.M01331 Erythranthe guttata HOM05D004937 ORTHO05D006414 8.8e-83 311.6 280 56.1
HPP92_014181 Vanilla planifolia HOM05D004937 ORTHO05D006414 7.7e-79 298.5 267 55.4
Aqoxy3G03726 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 1.7e-70 270.8 279 48.7
Aqoxy4G00762 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 1.9e-69 267.3 271 49.1
CSS0005056 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 9.5e-69 265.0 173 68.8
Zm00001eb048580 Zea mays HOM05D004937 ORTHO05D006414 8.9e-67 258.5 189 63.5
Aqoxy5G03390 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 4.9e-57 226.1 227 48.5
CSS0029720 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 1.3e-54 218.0 270 45.6
CSS0048087 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 8.9e-51 205.3 270 43.3
Dinv13906 Davidia involucrata HOM05D004937 ORTHO05D006414 1.5e-50 204.5 267 41.9
Mapoly0074s0008 Marchantia polymorpha HOM05D004937 ORTHO05D006414 2.2e-49 200.7 280 43.2
BcaB08g37427 Brassica carinata HOM05D004937 ORTHO05D006414 5.4e-48 196.1 174 52.9
Dinv13904 Davidia involucrata HOM05D004937 ORTHO05D006414 5.4e-48 196.1 208 52.4
QL05p072848 Quercus lobata HOM05D004937 ORTHO05D006414 1.3e-46 191.4 137 63.5
BcaB08g37428 Brassica carinata HOM05D004937 ORTHO05D006414 3.0e-46 190.3 205 55.1
BcaB08g37425 Brassica carinata HOM05D004937 ORTHO05D006414 1.8e-43 181.0 133 61.7
Psat6g178560 Pisum sativum HOM05D004937 ORTHO05D006414 4.4e-42 176.4 137 61.3
Cre06.g305050 Chlamydomonas reinhardtii HOM05D004937 ORTHO05D006414 7.5e-42 175.6 294 34.7
PRCOL_00004553 Prasinoderma coloniale HOM05D004937 ORTHO05D006414 9.2e-40 168.7 296 34.8
MCO11G820 Micromonas commoda HOM05D004937 ORTHO05D006414 2.7e-39 167.2 301 35.9
Dinv13905 Davidia involucrata HOM05D004937 ORTHO05D006414 1.7e-38 164.5 102 73.5
Aqoxy3G02634 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 1.2e-31 141.7 160 45.0
Lj2C267G4 Lonicera japonica HOM05D004937 ORTHO05D006414 5.8e-26 122.9 97 58.8
AagrBONN_evm.TU.Sc2ySwM_368.2061 Anthoceros agrestis HOM05D004937 ORTHO05D006414 9.9e-26 122.1 119 52.1
PGSC0003DMG400026496 Solanum tuberosum HOM05D004937 ORTHO05D006414 9.9e-26 122.1 75 72.0
Cre06.g305250 Chlamydomonas reinhardtii HOM05D004937 ORTHO05D006414 1.3e-25 121.7 308 28.9
PRCOL_00006577 Prasinoderma coloniale HOM05D004937 ORTHO05D006414 2.9e-25 120.6 348 29.0
SGA_v2.0_scaffold4G01909 Striga asiatica HOM05D004937 ORTHO05D006414 3.6e-20 103.6 254 33.5
Atru.chr10.2244 Acer truncatum HOM05D004937 ORTHO05D006414 6.4e-17 92.8 144 55.6
TPR.G37060 Trifolium pratense HOM05D004937 ORTHO05D006414 1.6e-12 78.2 153 34.0
FAN25G1168 Fragaria x ananassa HOM05D004937 ORTHO05D006414 4.8e-12 76.6 122 39.3
Os10g0401100 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 1.8e-11 74.7 50 62.0
Dinv30719 Davidia involucrata HOM05D004937 ORTHO05D006414 6.5e-09 66.2 64 45.3
Os07g0510800 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 3.2e-08 63.9 63 47.6
Os07g0510300 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 5.5e-08 63.2 104 35.6
PSO832G4260 Papaver somniferum HOM05D004937 ORTHO05D002819 2.7e-07 60.8 52 53.8


User provided reference genes

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