Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0026323 Sechium edule HOM05D005602 ORTHO05D007049 5.0e-182 641.0 322 100.0
ClCG01G003580 Citrullus lanatus HOM05D005602 ORTHO05D007049 1.5e-61 240.7 184 73.4
MELO3C005587.2 Cucumis melo HOM05D005602 ORTHO05D007049 2.6e-61 240.0 177 74.6
CsaV3_5G003680 Cucumis sativus L. HOM05D005602 ORTHO05D007049 9.8e-61 238.0 177 74.0
Cfa012027 Carpinus fangiana HOM05D005602 ORTHO05D007049 4.3e-40 169.5 182 53.8
FvH4_5g00820 Fragaria vesca HOM05D005602 ORTHO05D007049 4.7e-39 166.0 187 57.2
FAN04G0086 Fragaria x ananassa HOM05D005602 ORTHO05D007049 1.8e-38 164.1 187 57.2
Manes.02G032722 Manihot esculenta HOM05D005602 ORTHO05D007049 1.8e-38 164.1 183 53.0
FAN18G1786 Fragaria x ananassa HOM05D005602 ORTHO05D007049 2.4e-38 163.7 187 56.1
Potri.003G116200 Populus trichocarpa HOM05D005602 ORTHO05D007049 4.0e-38 162.9 168 57.7
QL12p015265 Quercus lobata HOM05D005602 ORTHO05D007049 1.5e-37 161.0 174 55.7
QL93p2011_0032 Quercus lobata HOM05D005602 ORTHO05D007049 1.5e-37 161.0 174 55.7
CANSAT21G1867 Cannabis sativa HOM05D005602 ORTHO05D007049 2.0e-37 160.6 188 55.9
CiPaw.12G104000 Carya illinoinensis HOM05D005602 ORTHO05D007049 5.8e-37 159.1 159 59.1
PGR042G3436 Punica granatum HOM05D005602 ORTHO05D007049 1.3e-36 157.9 185 52.4
CiPaw.11G146600 Carya illinoinensis HOM05D005602 ORTHO05D007049 1.7e-36 157.5 128 63.3
Gohir.D12G224100 Gossypium hirsutum HOM05D005602 ORTHO05D007049 2.9e-36 156.8 178 55.1
Gorai.008G240200 Gossypium raimondii HOM05D005602 ORTHO05D007049 2.9e-36 156.8 198 51.5
RcHm_v2.0_Chr7g0201261 Rosa chinensis HOM05D005602 ORTHO05D007049 2.9e-36 156.8 185 54.6
Atru.chr9.1453 Acer truncatum HOM05D005602 ORTHO05D007049 4.9e-36 156.0 150 60.7
Actinidia14472 Actinidia chinensis HOM05D005602 ORTHO05D007049 8.4e-36 155.2 183 53.0
Dinv37755 Davidia involucrata HOM05D005602 ORTHO05D007049 1.1e-35 154.8 183 50.8
Prupe.5G080700 Prunus persica HOM05D005602 ORTHO05D007049 1.4e-35 154.5 173 56.6
Gohir.A12G221600 Gossypium hirsutum HOM05D005602 ORTHO05D007049 2.4e-35 153.7 195 51.3
Haze_09041 Corylus avellana HOM05D005602 ORTHO05D007049 3.2e-35 153.3 182 52.2
Sabra03G0080700 Salix brachista HOM05D005602 ORTHO05D007049 3.2e-35 153.3 186 53.2
Duzib068G0634 Durio zibethinus HOM05D005602 ORTHO05D007049 9.3e-35 151.8 200 50.5
FAN08G0713 Fragaria x ananassa HOM05D005602 ORTHO05D007049 2.1e-34 150.6 212 50.9
Nn1g01234 Nelumbo nucifera HOM05D005602 ORTHO05D007049 2.7e-34 150.2 191 50.3
vmacro00220 Vaccinium macrocarpon HOM05D005602 ORTHO05D007049 3.5e-34 149.8 182 51.1
Duzib084G0205 Durio zibethinus HOM05D005602 ORTHO05D007049 6.6e-33 145.6 200 49.0
MD04G1078000 Malus domestica HOM05D005602 ORTHO05D007049 8.7e-33 145.2 209 49.3
Ciclev10021045m.g Citrus clementina HOM05D005602 ORTHO05D007049 1.1e-32 144.8 181 51.9
MBI04_g35274_MAGBIO Magnolia biondii HOM05D005602 ORTHO05D007049 1.1e-32 144.8 181 49.7
Cc08_g13360 Coffea canephora HOM05D005602 ORTHO05D007049 4.3e-32 142.9 137 56.9
Phvul.002G151100 Phaseolus vulgaris HOM05D005602 ORTHO05D007049 4.3e-32 142.9 160 53.1
Thecc.03G262800 Theobroma cacao HOM05D005602 ORTHO05D007049 4.3e-32 142.9 201 48.3
COL.COLO4_23856 Corchorus olitorius HOM05D005602 ORTHO05D007049 1.3e-31 141.4 204 46.6
Oeu025553.1 Olea europaea HOM05D005602 ORTHO05D007049 1.6e-31 141.0 195 45.6
Nitab4.5_0001816g0270 Nicotiana tabacum HOM05D005602 ORTHO05D007049 2.8e-31 140.2 189 47.6
PGSC0003DMG400003955 Solanum tuberosum HOM05D005602 ORTHO05D007049 1.4e-30 137.9 191 48.7
VMungo1215G3172 Vigna mungo HOM05D005602 ORTHO05D007049 1.4e-30 137.9 172 51.2
Rhsim11G0040300 Rhododendron simsii HOM05D005602 ORTHO05D007049 2.4e-30 137.1 190 47.9
Sc22g0000560 Simmondsia chinensis HOM05D005602 ORTHO05D007049 3.1e-30 136.7 182 49.5
TWI60G0529 Tripterygium wilfordii HOM05D005602 ORTHO05D007049 4.0e-30 136.3 193 45.6
Nitab4.5_0001265g0040 Nicotiana tabacum HOM05D005602 ORTHO05D007049 5.3e-30 136.0 178 47.8
Potri.001G116200 Populus trichocarpa HOM05D005602 ORTHO05D007049 5.3e-30 136.0 138 56.5
Sopen08g027940 Solanum pennellii HOM05D005602 ORTHO05D007049 5.3e-30 136.0 188 49.5
CSS0020464 Camellia sinensis var. sinensis HOM05D005602 ORTHO05D007049 9.0e-30 135.2 178 47.8
Migut.E00970 Erythranthe guttata HOM05D005602 ORTHO05D007049 5.8e-29 132.5 179 48.0
Nitab4.5_0000439g0160 Nicotiana tabacum HOM05D005602 ORTHO05D007049 5.8e-29 132.5 181 47.0
Eucgr.E00479 Eucalyptus grandis HOM05D005602 ORTHO05D007049 7.6e-29 132.1 160 47.5
MSTRG.1934 Avicennia marina HOM05D005602 ORTHO05D007049 9.9e-29 131.7 187 45.5
Oeu056795.1 Olea europaea HOM05D005602 ORTHO05D007049 9.9e-29 131.7 181 49.2
TWI81G0110 Tripterygium wilfordii HOM05D005602 ORTHO05D007049 9.9e-29 131.7 186 46.8
Hma1.2p1_0138F.1_g063075 Hydrangea macrophylla HOM05D005602 ORTHO05D007049 1.7e-28 131.0 212 42.5
Hma1.2p1_0138F.1_g063080 Hydrangea macrophylla HOM05D005602 ORTHO05D007049 1.7e-28 131.0 212 42.5
Lj2A206G27 Lonicera japonica HOM05D005602 ORTHO05D007049 1.7e-28 131.0 165 50.3
Solyc08g079590.3 Solanum lycopersicum HOM05D005602 ORTHO05D007049 1.7e-28 131.0 192 48.4
AUR62017384 Chenopodium quinoa HOM05D005602 ORTHO05D007049 3.8e-28 129.8 182 46.2
HanXRQChr17g0550481 Helianthus annuus HOM05D005602 ORTHO05D007049 4.9e-28 129.4 175 45.7
Lsat_1_v5_gn_3_3441 Lactuca sativa HOM05D005602 ORTHO05D007049 4.9e-28 129.4 187 43.9
DCAR_000860 Daucus carota HOM05D005602 ORTHO05D007049 8.4e-28 128.6 154 50.0
Gohir.A08G174400 Gossypium hirsutum HOM05D005602 ORTHO05D007049 8.4e-28 128.6 198 45.5
Glyma.01G212500 Glycine max HOM05D005602 ORTHO05D007049 1.1e-27 128.3 140 54.3
Nitab4.5_0005241g0030 Nicotiana tabacum HOM05D005602 ORTHO05D007049 1.1e-27 128.3 185 44.3
Peaxi162Scf00271g00219 Petunia axillaris HOM05D005602 ORTHO05D007049 1.9e-27 127.5 185 45.9
ECA233G1349 Erigeron canadensis HOM05D000214 ORTHO05D000131 3.2e-27 126.7 181 45.9
Glyma.11G029300 Glycine max HOM05D005602 ORTHO05D007049 3.2e-27 126.7 174 46.0
Peaxi162Scf00102g01238 Petunia axillaris HOM05D005602 ORTHO05D007049 3.2e-27 126.7 183 45.4
Gorai.004G203300 Gossypium raimondii HOM05D005602 ORTHO05D007049 5.4e-27 125.9 141 53.2
EL10Ac5g12626 Beta vulgaris HOM05D005602 ORTHO05D007049 7.1e-27 125.6 204 43.6
HanXRQChr17g0550491 Helianthus annuus HOM05D005602 ORTHO05D007049 9.3e-27 125.2 190 44.2
Nn4g26397 Nelumbo nucifera HOM05D005602 ORTHO05D007049 1.2e-26 124.8 178 48.3
Lj2g0005511 Lotus japonicus HOM05D005602 ORTHO05D007049 2.7e-26 123.6 175 46.3
FAN13G0541 Fragaria x ananassa HOM05D005602 ORTHO05D007049 6.0e-26 122.5 81 76.5
THA.LOC104813933 Tarenaya hassleriana HOM05D005602 ORTHO05D009891 7.9e-26 122.1 194 46.4
Medtr5g011770 Medicago truncatula HOM05D005602 ORTHO05D007049 8.7e-25 118.6 189 42.9
CSS0008936 Camellia sinensis var. sinensis HOM05D005602 ORTHO05D007049 1.5e-24 117.9 143 47.6
Carub.0007s1851 Capsella rubella HOM05D005602 ORTHO05D007049 1.5e-24 117.9 198 45.5
Lalb_Chr05g0214641 Lupinus albus HOM05D005602 ORTHO05D007049 1.9e-24 117.5 166 44.6
ATR0810G194 Amborella trichopoda HOM05D005602 ORTHO05D007049 2.5e-24 117.1 171 44.4
AL7G30790 Arabidopsis lyrata HOM05D005602 ORTHO05D007049 2.5e-24 117.1 195 45.1
PGR031G0052 Punica granatum HOM05D005602 ORTHO05D007049 9.6e-24 115.2 191 42.9
HanXRQChr07g0188621 Helianthus annuus HOM05D005602 ORTHO05D007049 1.3e-23 114.8 164 41.5
Lsat_1_v5_gn_6_9681 Lactuca sativa HOM05D005602 ORTHO05D007049 2.8e-23 113.6 179 43.6
Aa31LG6G4830 Aethionema arabicum HOM05D005602 ORTHO05D007049 6.2e-23 112.5 195 45.1
SGA_v2.0_scaffold37G14843 Striga asiatica HOM05D005602 ORTHO05D007049 6.2e-23 112.5 199 37.7
Hund11559 Selenicereus undatus HOM05D005602 ORTHO05D007049 3.1e-22 110.2 186 40.3
TAR629G2866 Trochodendron aralioides HOM05D005602 ORTHO05D007049 3.1e-22 110.2 71 74.6
Sp7g20810 Schrenkiella parvula HOM05D005602 ORTHO05D007049 6.9e-22 109.0 196 44.9
AT4G22758 Arabidopsis thaliana HOM05D005602 ORTHO05D007049 9.0e-22 108.6 194 42.8
Psat2g179800 Pisum sativum HOM05D005602 ORTHO05D007049 9.0e-22 108.6 135 48.9
Sopen08g003460 Solanum pennellii HOM05D005602 ORTHO05D007049 9.0e-22 108.6 172 43.6
BcaNung01034 Brassica carinata HOM05D005602 ORTHO05D007049 2.6e-21 107.1 187 42.2
BcaB03g11744 Brassica carinata HOM05D005602 ORTHO05D007049 3.4e-21 106.7 194 41.2
C03p84390 Brassica napus HOM05D005602 ORTHO05D007049 5.8e-21 105.9 194 41.2
Solyc08g007500.3 Solanum lycopersicum HOM05D005602 ORTHO05D007049 9.9e-21 105.1 167 43.7
CARHR229710 Cardamine hirsuta HOM05D005602 ORTHO05D007049 1.3e-20 104.8 197 41.1
Thhalv10026059m.g Eutrema salsugineum HOM05D005602 ORTHO05D007049 1.3e-20 104.8 193 41.5
A08p15970 Brassica napus HOM05D005602 ORTHO05D007049 1.7e-20 104.4 194 41.2
BraA08t33569Z Brassica rapa HOM05D005602 ORTHO05D007049 1.7e-20 104.4 194 41.2
BolC3t20728H Brassica oleracea HOM05D005602 ORTHO05D007049 2.2e-20 104.0 194 40.7
PSO782G4384 Papaver somniferum HOM05D005602 ORTHO05D007049 2.2e-20 104.0 101 57.4
CARHR254110 Cardamine hirsuta HOM05D005602 ORTHO05D007049 2.9e-20 103.6 201 40.8
BcaC01g00797 Brassica carinata HOM05D005602 ORTHO05D007049 4.9e-20 102.8 194 40.2
HanXRQChr17g0550471 Helianthus annuus HOM05D005602 ORTHO05D007049 4.9e-20 102.8 73 67.1
Sp6g05400 Schrenkiella parvula HOM05D005602 ORTHO05D007049 4.9e-20 102.8 156 46.2
BcaB05g23765 Brassica carinata HOM05D005602 ORTHO05D007049 8.4e-20 102.1 113 54.0
unitig_52.g17500 Utricularia gibba HOM05D005602 ORTHO05D007049 1.1e-19 101.7 161 41.6
BcaC03g16309 Brassica carinata HOM05D005602 ORTHO05D007049 3.2e-19 100.1 198 40.9
BolC2t10138H Brassica oleracea HOM05D005602 ORTHO05D007049 3.2e-19 100.1 198 40.9
BraA02t07575Z Brassica rapa HOM05D005602 ORTHO05D007049 4.2e-19 99.8 193 43.5
PSO478G5168 Papaver somniferum HOM05D005602 ORTHO05D007049 4.2e-19 99.8 75 65.3
AUR62010517 Chenopodium quinoa HOM05D005602 ORTHO05D007049 5.5e-19 99.4 79 62.0
HPP92_020968 Vanilla planifolia HOM05D005602 ORTHO05D007049 9.3e-19 98.6 171 38.6
BraA01t01350Z Brassica rapa HOM05D005602 ORTHO05D007049 1.2e-18 98.2 197 41.1
AL6G46940 Arabidopsis lyrata HOM05D005602 ORTHO05D007049 1.6e-18 97.8 197 40.6
A02p25870 Brassica napus HOM05D005602 ORTHO05D007049 3.5e-18 96.7 193 40.4
BolC1t01656H Brassica oleracea HOM05D005602 ORTHO05D007049 3.5e-18 96.7 197 41.6
A01p14030 Brassica napus HOM05D005602 ORTHO05D009891 4.6e-18 96.3 210 41.0
BcaC09g51083 Brassica carinata HOM05D005602 ORTHO05D007049 6.0e-18 95.9 197 41.6
Carub.0006s3122 Capsella rubella HOM05D005602 ORTHO05D007049 6.0e-18 95.9 156 42.9
Eucgr.D01978 Eucalyptus grandis HOM05D005602 ORTHO05D007049 6.0e-18 95.9 176 42.0
Zm00001eb167430 Zea mays HOM05D005602 ORTHO05D007049 6.0e-18 95.9 179 36.9
C01p17190 Brassica napus HOM05D005602 ORTHO05D007049 1.8e-17 94.4 246 38.2
CAN.G630.58 Capsicum annuum HOM05D005602 ORTHO05D007049 8.7e-17 92.0 56 76.8
Aa31LG9G10380 Aethionema arabicum HOM05D005602 ORTHO05D007049 3.3e-16 90.1 180 38.9
Thhalv10028909m.g Eutrema salsugineum HOM05D005602 ORTHO05D007049 3.3e-16 90.1 193 38.9
CDE04G1617 Ceratophyllum demersum HOM05D005602 ORTHO05D007049 4.8e-15 86.3 154 36.4
Os02g0448600 Oryza sativa ssp. japonica HOM05D005602 ORTHO05D007049 6.2e-15 85.9 190 34.2
Cpa.g.sc29.79 Carica papaya HOM05D005602 ORTHO05D007049 1.5e-13 81.3 163 42.3
SEGI_10185 Sequoiadendron giganteum HOM05D005602 ORTHO05D007049 1.2e-10 71.6 138 34.1
CANSAT54G1888 Cannabis sativa HOM05D002481 ORTHO05D002643 1.1e-08 65.1 102 38.2
Actinidia13007 Actinidia chinensis HOM05D005602 ORTHO05D007049 2.5e-08 63.9 136 37.5
PSO063G1260 Papaver somniferum HOM05D002481 ORTHO05D002643 7.4e-08 62.4 72 43.1
PSO339G5316 Papaver somniferum HOM05D002481 ORTHO05D002643 7.4e-08 62.4 72 43.1
Eucgr.B03896 Eucalyptus grandis HOM05D002481 ORTHO05D002643 1.3e-07 61.6 85 38.8
Aqoxy2G01422 Aquilegia oxysepala HOM05D002481 ORTHO05D002643 1.6e-07 61.2 110 30.0
Aqoxy2G01424 Aquilegia oxysepala HOM05D002481 ORTHO05D002643 1.6e-07 61.2 110 30.0
MELO3C021455.2 Cucumis melo HOM05D002481 ORTHO05D002643 1.6e-07 61.2 96 33.3
Potri.009G149200 Populus trichocarpa HOM05D002481 ORTHO05D002643 1.6e-07 61.2 103 37.9
Cc01_g09840 Coffea canephora HOM05D002481 ORTHO05D002643 3.7e-07 60.1 106 33.0
Nitab4.5_0000227g0140 Nicotiana tabacum HOM05D002481 ORTHO05D002643 3.7e-07 60.1 79 39.2
Potri.004G188600 Populus trichocarpa HOM05D002481 ORTHO05D002643 3.7e-07 60.1 100 38.0
CAN.G386.31 Capsicum annuum HOM05D002481 ORTHO05D002643 4.8e-07 59.7 68 41.2
CsaV3_6G014700 Cucumis sativus L. HOM05D002481 ORTHO05D002643 4.8e-07 59.7 96 32.3
Psat5g254560 Pisum sativum HOM05D002481 ORTHO05D002643 4.8e-07 59.7 100 36.0
TPR.G32398 Trifolium pratense HOM05D002481 ORTHO05D002643 4.8e-07 59.7 101 34.7
ClCG02G021890 Citrullus lanatus HOM05D002481 ORTHO05D002643 6.3e-07 59.3 96 34.4
Sabra04G0129500 Salix brachista HOM05D002481 ORTHO05D002643 6.3e-07 59.3 100 37.0
Sc12g0004130 Simmondsia chinensis HOM05D002481 ORTHO05D002643 8.2e-07 58.9 109 32.1
Solyc11g066860.2 Solanum lycopersicum HOM05D002481 ORTHO05D002643 8.2e-07 58.9 129 31.0
Haze_23454 Corylus avellana HOM05D002481 ORTHO05D002643 1.1e-06 58.5 96 37.5
Ca_01681_v3 Cicer arietinum L. HOM05D002481 ORTHO05D002643 1.4e-06 58.2 118 33.1
Nitab4.5_0007303g0040 Nicotiana tabacum HOM05D002481 ORTHO05D002643 1.4e-06 58.2 127 28.3
Oeu050177.2 Olea europaea HOM05D002481 ORTHO05D002643 1.4e-06 58.2 127 27.6
Hund00790 Selenicereus undatus HOM05D002481 ORTHO05D002643 1.4e-06 58.2 80 36.2
DCAR_018741 Daucus carota HOM05D002481 ORTHO05D002643 1.8e-06 57.8 68 39.7
THA.LOC104800558 Tarenaya hassleriana HOM05D002481 ORTHO05D002643 1.8e-06 57.8 92 33.7
TWI79G0527 Tripterygium wilfordii HOM05D002481 ORTHO05D002643 1.8e-06 57.8 65 41.5
DCAR_005666 Daucus carota HOM05D002481 ORTHO05D002643 2.4e-06 57.4 72 38.9
PGR119G2131 Punica granatum HOM05D002481 ORTHO05D002643 2.4e-06 57.4 98 33.7
Sabra09G0117800 Salix brachista HOM05D002481 ORTHO05D002643 2.4e-06 57.4 100 36.0
PGSC0003DMG400028068 Solanum tuberosum HOM05D002481 ORTHO05D002643 2.4e-06 57.4 68 39.7
Thecc.09G292100 Theobroma cacao HOM05D002481 ORTHO05D002643 2.4e-06 57.4 93 35.5
Sopen01g004940 Solanum pennellii HOM05D002481 ORTHO05D002643 3.1e-06 57.0 111 32.4
PGSC0003DMG400007125 Solanum tuberosum HOM05D002481 ORTHO05D002643 3.1e-06 57.0 65 43.1
Nitab4.5_0001453g0050 Nicotiana tabacum HOM05D002481 ORTHO05D002643 4.1e-06 56.6 127 26.8
Peaxi162Scf00789g00532 Petunia axillaris HOM05D002481 ORTHO05D002643 4.1e-06 56.6 104 28.8
CDE08G0576 Ceratophyllum demersum HOM05D000911 ORTHO05D000890 5.3e-06 56.2 96 34.4
PSO782G2879 Papaver somniferum HOM05D002481 ORTHO05D002643 5.3e-06 56.2 79 38.0
PSO782G5698 Papaver somniferum HOM05D002481 ORTHO05D002643 5.3e-06 56.2 79 38.0
Solyc01g009430.3 Solanum lycopersicum HOM05D002481 ORTHO05D002643 5.3e-06 56.2 68 38.2
Actinidia37101 Actinidia chinensis HOM05D002481 ORTHO05D002643 6.9e-06 55.8 72 38.9
Cfa010085 Carpinus fangiana HOM05D002481 ORTHO05D002643 6.9e-06 55.8 65 43.1
HanXRQChr14g0451951 Helianthus annuus HOM05D002481 ORTHO05D002643 6.9e-06 55.8 121 33.1
Sopen11g026570 Solanum pennellii HOM05D002481 ORTHO05D002643 6.9e-06 55.8 128 28.9
Actinidia02079 Actinidia chinensis HOM05D005602 ORTHO05D007049 9.0e-06 55.5 101 36.6
CAN.G919.6 Capsicum annuum HOM05D002481 ORTHO05D002643 9.0e-06 55.5 100 34.0
Cpa.g.sc47.62 Carica papaya HOM05D002481 ORTHO05D002643 9.0e-06 55.5 65 40.0
SalBow3G3337 Salvia bowleyana HOM05D002481 ORTHO05D002643 9.0e-06 55.5 68 38.2
SEGI_07544 Sequoiadendron giganteum HOM05D002481 ORTHO05D002643 9.0e-06 55.5 79 38.0
SEGI_34924 Sequoiadendron giganteum HOM05D002481 ORTHO05D002643 9.0e-06 55.5 70 40.0
PGSC0003DMG400026533 Solanum tuberosum HOM05D002481 ORTHO05D002643 9.0e-06 55.5 68 38.2


User provided reference genes

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