Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0026233 Sechium edule HOM05D004192 ORTHO05D004917 0.0e+00 1739.9 869 100.0
ClCG08G008030 Citrullus lanatus HOM05D004192 ORTHO05D004917 0.0e+00 1536.2 873 89.2
MELO3C019875.2 Cucumis melo HOM05D004192 ORTHO05D004917 0.0e+00 1518.1 875 88.0
CsaV3_2G032910 Cucumis sativus L. HOM05D004192 ORTHO05D004917 0.0e+00 1513.0 876 87.8
Sed0024945 Sechium edule HOM05D004192 ORTHO05D004917 0.0e+00 1380.5 780 89.2
CANSAT56G0904 Cannabis sativa HOM05D004192 ORTHO05D004917 0.0e+00 1270.0 871 73.7
COL.COLO4_34171 Corchorus olitorius HOM05D004192 ORTHO05D004917 0.0e+00 1265.8 875 73.5
Thecc.10G097700 Theobroma cacao HOM05D004192 ORTHO05D004917 0.0e+00 1255.0 877 73.7
FAN10G1549 Fragaria x ananassa HOM05D004192 ORTHO05D004917 0.0e+00 1249.6 874 73.0
FvH4_7g06400 Fragaria vesca HOM05D004192 ORTHO05D004917 0.0e+00 1247.6 874 73.0
FAN01G1656 Fragaria x ananassa HOM05D004192 ORTHO05D004917 0.0e+00 1245.7 874 72.5
TWI38G0502 Tripterygium wilfordii HOM05D004192 ORTHO05D004917 0.0e+00 1245.0 871 73.0
CSS0020257 Camellia sinensis var. sinensis HOM05D004192 ORTHO05D004917 0.0e+00 1241.1 885 71.6
PGR044G0968 Punica granatum HOM05D004192 ORTHO05D004917 0.0e+00 1239.2 869 73.6
Eucgr.J01026 Eucalyptus grandis HOM05D004192 ORTHO05D004917 0.0e+00 1237.6 856 73.4
FAN06G5118 Fragaria x ananassa HOM05D004192 ORTHO05D004917 0.0e+00 1234.6 902 70.7
Dinv31284 Davidia involucrata HOM05D004192 ORTHO05D004917 0.0e+00 1231.5 877 73.1
Gorai.008G097500 Gossypium raimondii HOM05D004192 ORTHO05D004917 0.0e+00 1228.4 862 72.4
MD07G1072600 Malus domestica HOM05D004192 ORTHO05D004917 0.0e+00 1226.1 873 71.8
Gohir.A12G088900 Gossypium hirsutum HOM05D004192 ORTHO05D004917 0.0e+00 1220.7 862 72.0
Lalb_Chr02g0151281 Lupinus albus HOM05D004192 ORTHO05D004917 0.0e+00 1220.7 870 70.7
MD02G1244600 Malus domestica HOM05D004192 ORTHO05D004917 0.0e+00 1214.5 877 71.0
RcHm_v2.0_Chr1g0334491 Rosa chinensis HOM05D004192 ORTHO05D004917 0.0e+00 1213.0 872 70.9
Gohir.A01G129200 Gossypium hirsutum HOM05D004192 ORTHO05D004917 0.0e+00 1205.3 874 72.7
Phvul.007G105800 Phaseolus vulgaris HOM05D004192 ORTHO05D004917 0.0e+00 1204.9 870 70.5
Gohir.D01G118800 Gossypium hirsutum HOM05D004192 ORTHO05D004917 0.0e+00 1202.6 874 72.4
Gorai.002G144900 Gossypium raimondii HOM05D004192 ORTHO05D004917 0.0e+00 1202.6 874 72.4
Duzib114G0707 Durio zibethinus HOM05D004192 ORTHO05D004917 0.0e+00 1198.7 839 74.1
FAN03G2327 Fragaria x ananassa HOM05D004192 ORTHO05D004917 0.0e+00 1195.6 874 70.6
Duzib128G0631 Durio zibethinus HOM05D004192 ORTHO05D004917 0.0e+00 1191.4 881 70.8
Cc02_g10300 Coffea canephora HOM05D004192 ORTHO05D004917 0.0e+00 1191.0 875 70.3
Glyma.10G201300 Glycine max HOM05D004192 ORTHO05D004917 0.0e+00 1191.0 873 70.2
VMungo0720G1942 Vigna mungo HOM05D004192 ORTHO05D004917 0.0e+00 1185.6 868 69.7
THA.LOC104816452 Tarenaya hassleriana HOM05D004192 ORTHO05D004917 0.0e+00 1183.3 873 70.4
Potri.010G233600 Populus trichocarpa HOM05D004192 ORTHO05D004917 0.0e+00 1181.4 867 70.5
Hund22302 Selenicereus undatus HOM05D004192 ORTHO05D004917 0.0e+00 1181.0 868 70.3
Gohir.D12G087300 Gossypium hirsutum HOM05D004192 ORTHO05D004917 0.0e+00 1174.8 862 70.3
Potri.008G026900 Populus trichocarpa HOM05D004192 ORTHO05D004917 0.0e+00 1174.5 871 69.3
arahy.Tifrunner.gnm1.ann1.CA0PQ2 Arachis hypogaea HOM05D004192 ORTHO05D004917 0.0e+00 1173.7 871 69.8
Peaxi162Scf00398g00058 Petunia axillaris HOM05D004192 ORTHO05D004917 0.0e+00 1173.7 873 69.6
Nn6g35085 Nelumbo nucifera HOM05D004192 ORTHO05D004917 0.0e+00 1168.3 847 69.8
Sc20g0001360 Simmondsia chinensis HOM05D004192 ORTHO05D004917 0.0e+00 1165.2 846 70.9
DCAR_019044 Daucus carota HOM05D004192 ORTHO05D004917 0.0e+00 1162.5 871 68.5
Lalb_Chr21g0313171 Lupinus albus HOM05D004192 ORTHO05D004917 0.0e+00 1162.5 870 69.1
Prupe.2G090700 Prunus persica HOM05D004192 ORTHO05D004917 0.0e+00 1161.4 783 74.2
ECA233G2766 Erigeron canadensis HOM05D004192 ORTHO05D004917 0.0e+00 1161.0 872 68.3
Lsat_1_v5_gn_8_23081 Lactuca sativa HOM05D004192 ORTHO05D004917 0.0e+00 1159.8 873 68.3
Ca_10484_v3 Cicer arietinum L. HOM05D004192 ORTHO05D004917 0.0e+00 1159.4 869 68.7
MSTRG.8112 Avicennia marina HOM05D004192 ORTHO05D004917 0.0e+00 1155.2 851 70.5
HanXRQChr12g0368431 Helianthus annuus HOM05D004192 ORTHO05D004917 0.0e+00 1154.4 881 68.6
THA.LOC104823194 Tarenaya hassleriana HOM05D004192 ORTHO05D004917 0.0e+00 1153.7 872 67.8
EL10Ac4g08605 Beta vulgaris HOM05D004192 ORTHO05D004917 0.0e+00 1153.3 867 68.6
CiPaw.13G035500 Carya illinoinensis HOM05D004192 ORTHO05D004917 0.0e+00 1151.0 873 68.4
HanXRQChr08g0218151 Helianthus annuus HOM05D004192 ORTHO05D004917 0.0e+00 1147.9 881 67.2
AT3G10550 Arabidopsis thaliana HOM05D004192 ORTHO05D004917 0.0e+00 1143.6 874 66.7
Migut.F01661 Erythranthe guttata HOM05D004192 ORTHO05D004917 0.0e+00 1143.3 873 67.6
Thhalv10020062m.g Eutrema salsugineum HOM05D004192 ORTHO05D004917 0.0e+00 1142.9 869 67.0
Sopen11g003530 Solanum pennellii HOM05D004192 ORTHO05D004917 0.0e+00 1140.6 864 67.1
Sp3g08830 Schrenkiella parvula HOM05D004192 ORTHO05D004917 0.0e+00 1139.4 872 67.0
AL3G21970 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 0.0e+00 1139.0 878 66.5
TAR623G0905 Trochodendron aralioides HOM05D004192 ORTHO05D004917 0.0e+00 1138.6 876 67.5
Sabra08G0018400 Salix brachista HOM05D004192 ORTHO05D004917 0.0e+00 1138.3 899 66.5
Solyc11g007670.3 Solanum lycopersicum HOM05D004192 ORTHO05D004917 0.0e+00 1135.2 864 66.9
Carub.0003s0979 Capsella rubella HOM05D004192 ORTHO05D004917 0.0e+00 1132.1 873 66.4
Rhsim03G0109700 Rhododendron simsii HOM05D004192 ORTHO05D004917 0.0e+00 1130.9 979 62.3
Psat6g175320 Pisum sativum HOM05D004192 ORTHO05D004917 0.0e+00 1130.2 875 66.7
Lj5g0013826 Lotus japonicus HOM05D004192 ORTHO05D004917 0.0e+00 1129.8 866 67.4
Manes.10G054700 Manihot esculenta HOM05D004192 ORTHO05D004917 0.0e+00 1129.8 787 72.4
GSVIVG01034690001 Vitis vinifera HOM05D004192 ORTHO05D004917 0.0e+00 1126.3 772 74.4
Nn2g13965 Nelumbo nucifera HOM05D004192 ORTHO05D004917 0.0e+00 1125.5 877 67.0
Aqoxy1G00968 Aquilegia oxysepala HOM05D004192 ORTHO05D004917 0.0e+00 1122.5 848 67.8
Glyma.20G189100 Glycine max HOM05D004192 ORTHO05D004917 0.0e+00 1122.1 887 67.2
TPR.G2517 Trifolium pratense HOM05D004192 ORTHO05D004917 0.0e+00 1115.5 952 63.0
Sabra10G0181200 Salix brachista HOM05D004192 ORTHO05D004917 0.0e+00 1110.9 953 62.5
Aa31LG3G3400 Aethionema arabicum HOM05D004192 ORTHO05D004917 0.0e+00 1109.7 874 66.0
SGA_v2.0_scaffold62G21320 Striga asiatica HOM05D004192 ORTHO05D004917 0.0e+00 1100.1 932 62.3
BcaNung05805 Brassica carinata HOM05D004192 ORTHO05D004917 0.0e+00 1095.5 876 64.7
BolC1t05384H Brassica oleracea HOM05D004192 ORTHO05D004917 0.0e+00 1095.5 876 64.7
PSO384G3766 Papaver somniferum HOM05D004192 ORTHO05D004917 0.0e+00 1095.5 850 66.1
PSO339G1524 Papaver somniferum HOM05D004192 ORTHO05D004917 0.0e+00 1094.3 869 65.0
Thhalv10012689m.g Eutrema salsugineum HOM05D004192 ORTHO05D004917 0.0e+00 1092.4 871 65.2
Lj3A933G36 Lonicera japonica HOM05D004192 ORTHO05D004917 0.0e+00 1090.9 889 65.9
CSS0018543 Camellia sinensis var. sinensis HOM05D004192 ORTHO05D004917 0.0e+00 1083.6 746 73.3
AL6G14190 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 0.0e+00 1079.3 874 65.0
Ah.04g163610 Amaranthus hybridus HOM05D004192 ORTHO05D004917 0.0e+00 1078.5 863 65.2
Haze_02630 Corylus avellana HOM05D004192 ORTHO05D004917 0.0e+00 1076.6 1026 58.5
AT5G04540 Arabidopsis thaliana HOM05D004192 ORTHO05D004917 0.0e+00 1075.8 872 63.5
Lj2C27G6 Lonicera japonica HOM05D004192 ORTHO05D004917 1.7e-309 1065.8 962 61.1
BraA01t04242Z Brassica rapa HOM05D004192 ORTHO05D004917 8.5e-309 1063.5 850 65.3
BolC9t59967H Brassica oleracea HOM05D004192 ORTHO05D004917 1.4e-308 1062.8 872 64.0
Sp6g38220 Schrenkiella parvula HOM05D004192 ORTHO05D004917 2.5e-308 1062.0 872 64.0
A10p31560 Brassica napus HOM05D004192 ORTHO05D004917 6.1e-307 1057.4 873 63.8
BraA10t45202Z Brassica rapa HOM05D004192 ORTHO05D004917 6.1e-307 1057.4 873 63.8
ATR0820G117 Amborella trichopoda HOM05D004192 ORTHO05D004917 1.4e-306 1056.2 849 65.3
C02p01980 Brassica napus HOM05D004192 ORTHO05D004917 3.9e-306 1054.7 872 64.0
BolC2t06155H Brassica oleracea HOM05D004192 ORTHO05D004917 5.1e-306 1054.3 872 64.0
Carub.0006s0348 Capsella rubella HOM05D004192 ORTHO05D004917 2.8e-304 1048.5 870 62.9
HanXRQChr14g0456301 Helianthus annuus HOM05D004192 ORTHO05D004917 3.7e-304 1048.1 882 63.6
Atru.chr12.952 Acer truncatum HOM05D004192 ORTHO05D004917 4.1e-303 1044.6 721 73.4
BraA02t04817Z Brassica rapa HOM05D004192 ORTHO05D004917 1.2e-302 1043.1 872 63.3
Nitab4.5_0000593g0020 Nicotiana tabacum HOM05D004192 ORTHO05D004917 1.5e-302 1042.7 905 62.2
HPP92_001744 Vanilla planifolia HOM05D004192 ORTHO05D004917 6.1e-299 1030.8 848 63.0
CAN.G135.58 Capsicum annuum HOM05D004192 ORTHO05D004917 6.7e-298 1027.3 756 69.8
Aa31LG11G5410 Aethionema arabicum HOM05D004192 ORTHO05D004917 1.8e-287 992.6 870 60.8
BcaC06g32164 Brassica carinata HOM05D004192 ORTHO05D004917 5.0e-285 984.6 767 65.8
BcaB04g21235 Brassica carinata HOM05D004192 ORTHO05D004917 2.1e-283 979.2 734 67.8
SEGI_16113 Sequoiadendron giganteum HOM05D004192 ORTHO05D004917 1.3e-272 943.3 857 58.0
CDE06G2538 Ceratophyllum demersum HOM05D004192 ORTHO05D004917 3.7e-272 941.8 736 65.8
AUR62041535 Chenopodium quinoa HOM05D004192 ORTHO05D004917 8.3e-272 940.6 846 60.3
AUR62041537 Chenopodium quinoa HOM05D004192 ORTHO05D004917 1.0e-269 933.7 847 59.9
ECA238G3394 Erigeron canadensis HOM05D004192 ORTHO05D004917 3.9e-269 931.8 807 60.8
Actinidia18569 Actinidia chinensis HOM05D004192 ORTHO05D004917 2.4e-263 912.5 619 75.9
PGSC0003DMG402027320 Solanum tuberosum HOM05D004192 ORTHO05D004917 6.2e-259 897.9 753 61.6
C09p72230 Brassica napus HOM05D004192 ORTHO05D004917 5.2e-250 868.2 698 65.3
CiPaw.14G028000 Carya illinoinensis HOM05D004192 ORTHO05D004917 5.1e-245 851.7 549 78.0
AagrBONN_evm.TU.Sc2ySwM_368.2559 Anthoceros agrestis HOM05D004192 ORTHO05D004917 3.2e-231 805.8 856 53.0
unitig_736.g22321 Utricularia gibba HOM05D004192 ORTHO05D004917 1.9e-228 796.6 872 51.8
Lsat_1_v5_gn_2_102840 Lactuca sativa HOM05D004192 ORTHO05D004917 1.3e-227 793.9 793 57.5
Medtr1g492590 Medicago truncatula HOM05D004192 ORTHO05D004917 1.6e-219 766.9 542 71.4
Pp3c22_15020 Physcomitrium patens HOM05D004192 ORTHO05D004917 1.8e-202 710.3 873 46.3
Mapoly0087s0031 Marchantia polymorpha HOM05D004192 ORTHO05D004917 1.3e-200 704.1 867 46.1
CARHR085080 Cardamine hirsuta HOM05D004192 ORTHO05D004917 1.1e-199 701.0 489 73.0
Pp3c18_20050 Physcomitrium patens HOM05D004192 ORTHO05D004917 1.4e-197 694.1 882 45.1
A01p41680 Brassica napus HOM05D004192 ORTHO05D004917 4.4e-172 609.4 475 67.6
Nitab4.5_0003408g0020 Nicotiana tabacum HOM05D004192 ORTHO05D004917 5.5e-167 592.4 777 46.6
Os08g0556700 Oryza sativa ssp. japonica HOM05D004192 ORTHO05D004917 4.4e-164 582.8 587 56.0
Ciclev10031728m.g Citrus clementina HOM05D004192 ORTHO05D004917 4.2e-159 566.2 401 72.1
MBI17_g20218_MAGBIO Magnolia biondii HOM05D004192 ORTHO05D004917 9.5e-159 565.1 461 64.2
CARHR208730 Cardamine hirsuta HOM05D004192 ORTHO05D004917 4.7e-158 562.8 474 62.2
SHI21315 Sapria himalayana HOM05D004192 ORTHO05D004917 3.0e-157 560.1 473 62.6
Hma1.2p1_0492F.1_g164750 Hydrangea macrophylla HOM05D004192 ORTHO05D004917 8.6e-152 542.0 396 70.2
SMO367G0225 Selaginella moellendorffii HOM05D004192 ORTHO05D004917 1.6e-150 537.7 835 41.9
vmacro07217 Vaccinium macrocarpon HOM05D004192 ORTHO05D004917 2.6e-148 530.4 508 59.6
Oeu026557.1 Olea europaea HOM05D004192 ORTHO05D004917 4.6e-137 493.0 752 42.7
CARHR085070 Cardamine hirsuta HOM05D004192 ORTHO05D004917 1.3e-123 448.4 389 59.1
Zm00001eb039660 Zea mays HOM05D004192 ORTHO05D004917 2.9e-123 447.2 475 53.5
AL3G45840 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 1.5e-119 434.9 366 64.2
Cpa.g.sc942.1 Carica papaya HOM05D004192 ORTHO05D004917 1.5e-119 434.9 312 69.2
arahy.Tifrunner.gnm1.ann1.VIL3TT Arachis hypogaea HOM05D004192 ORTHO05D004917 1.1e-114 418.7 329 67.8
Medtr1g092570 Medicago truncatula HOM05D004192 ORTHO05D004917 2.5e-111 407.5 325 65.2
MBI17_g20211_MAGBIO Magnolia biondii HOM05D004192 ORTHO05D004917 4.8e-110 403.3 367 60.2
SHI21312 Sapria himalayana HOM05D004192 ORTHO05D004917 3.9e-96 357.1 344 54.9
HanXRQChr14g0456291 Helianthus annuus HOM05D004192 ORTHO05D004917 3.1e-85 320.9 290 56.9
Oeu026556.1 Olea europaea HOM05D004192 ORTHO05D004917 1.7e-78 298.5 249 61.8
Hma1.2p1_0492F.1_g164740 Hydrangea macrophylla HOM05D004192 ORTHO05D004917 1.4e-77 295.4 210 71.0
Zm00001eb215930 Zea mays HOM05D004192 ORTHO05D004917 2.3e-64 251.5 185 65.4
Psat0s4326g0040 Pisum sativum HOM05D004192 ORTHO05D004917 7.5e-63 246.5 185 67.0
Cpa.g.c33984 Carica papaya HOM05D004192 ORTHO05D004917 8.5e-59 233.0 157 74.5
vmacro07216 Vaccinium macrocarpon HOM05D004192 ORTHO05D004917 1.0e-56 226.1 219 56.6
Psat0s3097g0040 Pisum sativum HOM05D004192 ORTHO05D004917 1.6e-44 185.7 146 68.5
Cfa026029 Carpinus fangiana HOM05D004192 ORTHO05D004917 4.5e-44 184.1 615 28.9
PGSC0003DMG401027320 Solanum tuberosum HOM05D004192 ORTHO05D004917 2.3e-40 171.8 156 61.5
QL04p040652 Quercus lobata HOM05D004192 ORTHO05D004917 2.6e-39 168.3 272 41.9
TAR371G0071 Trochodendron aralioides HOM05D004192 ORTHO05D004917 1.5e-31 142.5 128 63.3
SHI21313 Sapria himalayana HOM05D004192 ORTHO05D004917 1.7e-30 139.0 72 95.8
BcaB02g10205 Brassica carinata HOM05D004192 ORTHO05D004917 7.8e-28 130.2 138 55.1
QL04p040713 Quercus lobata HOM05D004192 ORTHO05D004917 5.0e-27 127.5 124 59.7
RcHm_v2.0_Chr4g0433221 Rosa chinensis HOM05D004192 ORTHO05D004917 4.9e-22 110.9 72 76.4
Oeu021819.1 Olea europaea HOM05D004192 ORTHO05D004917 4.1e-21 107.8 76 73.7
Actinidia18568 Actinidia chinensis HOM05D004192 ORTHO05D004917 1.7e-19 102.4 114 52.6
RcHm_v2.0_Chr0c16g0499861 Rosa chinensis HOM05D004192 ORTHO05D004917 2.3e-16 92.0 74 67.6
Rhsim01G0150300 Rhododendron simsii HOM05D004192 ORTHO05D004917 3.4e-15 88.2 99 47.5
Nitab4.5_0003408g0010 Nicotiana tabacum HOM05D004192 ORTHO05D004917 1.3e-14 86.3 66 65.2
RcHm_v2.0_Chr2g0132831 Rosa chinensis HOM05D004192 ORTHO05D004917 1.0e-11 76.6 47 78.7
Hma1.2p1_0492F.1_g164730 Hydrangea macrophylla HOM05D011107 ORTHO05D012795 6.2e-09 67.4 75 54.7
Lsat_1_v5_gn_6_80241 Lactuca sativa HOM05D004192 ORTHO05D004917 4.0e-08 64.7 44 75.0
AL4G18520 Arabidopsis lyrata HOM05D003414 ORTHO05D003913 5.8e-07 60.8 35 80.0
AL4G19510 Arabidopsis lyrata HOM05D002764 ORTHO05D002960 5.8e-07 60.8 35 80.0
AL5G23210 Arabidopsis lyrata HOM05D063572 ORTHO05D002960 5.8e-07 60.8 35 80.0


User provided reference genes

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