Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0026140 Sechium edule HOM05D003867 ORTHO05D004593 1.1e-284 982.6 487 100.0
CsaV3_3G039600 Cucumis sativus L. HOM05D003867 ORTHO05D004593 7.7e-275 949.9 487 94.7
MELO3C009702.2 Cucumis melo HOM05D003867 ORTHO05D004593 3.8e-274 947.6 487 94.5
Thecc.02G275800 Theobroma cacao HOM05D003867 ORTHO05D004593 3.9e-271 937.6 487 92.4
ClCG02G006860 Citrullus lanatus HOM05D003867 ORTHO05D004593 1.1e-270 936.0 487 93.4
COL.COLO4_12823 Corchorus olitorius HOM05D003867 ORTHO05D004593 2.0e-270 935.3 487 91.8
Gorai.001G109800 Gossypium raimondii HOM05D003867 ORTHO05D004593 3.3e-270 934.5 487 92.0
Gohir.D07G101900 Gossypium hirsutum HOM05D003867 ORTHO05D004593 5.7e-270 933.7 487 92.0
Duzib268G1394 Durio zibethinus HOM05D003867 ORTHO05D004593 1.3e-269 932.6 487 92.2
Gohir.A12G147700 Gossypium hirsutum HOM05D003867 ORTHO05D004593 2.8e-269 931.4 487 90.6
Prupe.1G231900 Prunus persica HOM05D003867 ORTHO05D004593 2.8e-269 931.4 487 92.8
Gohir.D12G152000 Gossypium hirsutum HOM05D003867 ORTHO05D004593 3.7e-269 931.0 487 91.8
Gorai.008G164400 Gossypium raimondii HOM05D003867 ORTHO05D004593 4.8e-269 930.6 486 92.2
Lalb_Chr03g0037281 Lupinus albus HOM05D003867 ORTHO05D004593 2.4e-268 928.3 484 92.4
CSS0021164 Camellia sinensis var. sinensis HOM05D003867 ORTHO05D004593 3.1e-268 927.9 487 91.4
Duzib251G0884 Durio zibethinus HOM05D003867 ORTHO05D004593 9.1e-268 926.4 487 91.0
Gohir.A07G097600 Gossypium hirsutum HOM05D003867 ORTHO05D004593 9.1e-268 926.4 487 90.6
CiPaw.05G113400 Carya illinoinensis HOM05D003867 ORTHO05D004593 4.5e-267 924.1 487 91.2
CANSAT64G1093 Cannabis sativa HOM05D003867 ORTHO05D004593 5.9e-267 923.7 484 91.9
Duzib248G0225 Durio zibethinus HOM05D003867 ORTHO05D004593 7.7e-267 923.3 487 91.4
Cpa.g.sc257.6 Carica papaya HOM05D003867 ORTHO05D004593 1.3e-266 922.5 487 91.6
MD13G1115400 Malus domestica HOM05D003867 ORTHO05D004593 2.9e-266 921.4 487 91.0
PGR119G1061 Punica granatum HOM05D003867 ORTHO05D004593 2.9e-266 921.4 492 91.1
CSS0008021 Camellia sinensis var. sinensis HOM05D003867 ORTHO05D004593 3.8e-266 921.0 487 90.6
Manes.12G014300 Manihot esculenta HOM05D003867 ORTHO05D004593 5.0e-266 920.6 487 91.0
Potri.010G057400 Populus trichocarpa HOM05D003867 ORTHO05D004593 5.0e-266 920.6 487 91.4
Lalb_Chr01g0021001 Lupinus albus HOM05D003867 ORTHO05D004593 6.5e-266 920.2 484 91.5
RcHm_v2.0_Chr4g0430891 Rosa chinensis HOM05D003867 ORTHO05D004593 1.1e-265 919.5 487 91.8
PGSC0003DMG400001292 Solanum tuberosum HOM05D003867 ORTHO05D004593 1.4e-265 919.1 486 91.4
Hund25446 Selenicereus undatus HOM05D003867 ORTHO05D004593 2.5e-265 918.3 483 91.1
Solyc02g087240.4 Solanum lycopersicum HOM05D003867 ORTHO05D004593 2.5e-265 918.3 486 91.2
Sopen02g031980 Solanum pennellii HOM05D003867 ORTHO05D004593 2.5e-265 918.3 486 91.2
Oeu020305.1 Olea europaea HOM05D003867 ORTHO05D004593 3.2e-265 917.9 486 92.0
TWI36G0688 Tripterygium wilfordii HOM05D003867 ORTHO05D004593 4.2e-265 917.5 487 91.2
Medtr1g042300 Medicago truncatula HOM05D003867 ORTHO05D004593 5.5e-265 917.1 484 90.7
Haze_12379 Corylus avellana HOM05D003867 ORTHO05D004593 9.4e-265 916.4 486 90.7
MD16G1115300 Malus domestica HOM05D003867 ORTHO05D004593 1.2e-264 916.0 487 91.2
Ca_12000_v3 Cicer arietinum L. HOM05D003867 ORTHO05D004593 1.6e-264 915.6 484 91.1
TAR374G1237 Trochodendron aralioides HOM05D003867 ORTHO05D004593 2.1e-264 915.2 486 91.6
QL03p054504 Quercus lobata HOM05D003867 ORTHO05D004593 2.7e-264 914.8 486 91.4
TPR.G25178 Trifolium pratense HOM05D003867 ORTHO05D004593 2.7e-264 914.8 484 90.3
Nitab4.5_0000271g0190 Nicotiana tabacum HOM05D003867 ORTHO05D004593 3.6e-264 914.4 485 90.7
Peaxi162Scf00128g01017 Petunia axillaris HOM05D003867 ORTHO05D004593 3.6e-264 914.4 485 91.3
ECA232G3717 Erigeron canadensis HOM05D003867 ORTHO05D004593 4.7e-264 914.1 484 90.7
Glyma.10G005500 Glycine max HOM05D003867 ORTHO05D004593 6.1e-264 913.7 484 90.9
FvH4_4g24110 Fragaria vesca HOM05D003867 ORTHO05D004593 1.0e-263 912.9 487 90.8
EL10Ac6g13463 Beta vulgaris HOM05D003867 ORTHO05D004593 1.8e-263 912.1 484 91.1
Migut.E00031 Erythranthe guttata HOM05D003867 ORTHO05D004593 1.8e-263 912.1 486 90.7
Nn4g22382 Nelumbo nucifera HOM05D003867 ORTHO05D004593 1.8e-263 912.1 486 91.6
TWI75G1178 Tripterygium wilfordii HOM05D003867 ORTHO05D004593 1.8e-263 912.1 487 89.5
Oeu019042.1 Olea europaea HOM05D003867 ORTHO05D004593 2.3e-263 911.8 486 92.0
Psat6g040120 Pisum sativum HOM05D003867 ORTHO05D004593 2.3e-263 911.8 484 90.7
DCAR_007011 Daucus carota HOM05D003867 ORTHO05D004593 3.0e-263 911.4 486 90.3
Sabra10G0047900 Salix brachista HOM05D003867 ORTHO05D004593 3.0e-263 911.4 486 90.3
arahy.Tifrunner.gnm1.ann1.VZW0IR Arachis hypogaea HOM05D003867 ORTHO05D004593 3.9e-263 911.0 485 90.7
Lj6g0022289 Lotus japonicus HOM05D003867 ORTHO05D004593 5.1e-263 910.6 484 91.7
vmacro15114 Vaccinium macrocarpon HOM05D003867 ORTHO05D004593 5.1e-263 910.6 487 90.1
Aa31LG3G18010 Aethionema arabicum HOM05D003867 ORTHO05D004593 8.8e-263 909.8 487 91.4
Carub.0006s0748 Capsella rubella HOM05D003867 ORTHO05D004593 8.8e-263 909.8 487 91.6
CARHR204460 Cardamine hirsuta HOM05D003867 ORTHO05D004593 1.1e-262 909.4 487 91.8
Glyma.02G003300 Glycine max HOM05D003867 ORTHO05D004593 1.1e-262 909.4 484 90.7
CDE09G0709 Ceratophyllum demersum HOM05D003867 ORTHO05D004593 1.5e-262 909.1 486 90.1
Hund06074 Selenicereus undatus HOM05D003867 ORTHO05D004593 1.5e-262 909.1 485 90.1
AT5G08530 Arabidopsis thaliana HOM05D003867 ORTHO05D004593 2.0e-262 908.7 487 91.6
A10p28200 Brassica napus HOM05D003867 ORTHO05D004593 2.6e-262 908.3 487 91.4
HanXRQChr09g0255191 Helianthus annuus HOM05D003867 ORTHO05D004593 2.6e-262 908.3 480 90.8
Phvul.007G274700 Phaseolus vulgaris HOM05D003867 ORTHO05D004593 2.6e-262 908.3 480 92.3
Rhsim12G0153900 Rhododendron simsii HOM05D003867 ORTHO05D004593 3.3e-262 907.9 487 90.3
AL6G19230 Arabidopsis lyrata HOM05D003867 ORTHO05D004593 4.4e-262 907.5 487 91.6
Thhalv10013394m.g Eutrema salsugineum HOM05D003867 ORTHO05D004593 5.7e-262 907.1 487 91.2
C03p04400 Brassica napus HOM05D003867 ORTHO05D004593 7.4e-262 906.7 487 91.4
VMungo0720G1468 Vigna mungo HOM05D003867 ORTHO05D004593 7.4e-262 906.7 493 91.9
Aqoxy3G01483 Aquilegia oxysepala HOM05D003867 ORTHO05D004593 9.7e-262 906.4 487 91.4
BraA10t44869Z Brassica rapa HOM05D003867 ORTHO05D004593 9.7e-262 906.4 486 91.4
Nn3g16522 Nelumbo nucifera HOM05D003867 ORTHO05D004593 1.3e-261 906.0 486 90.3
DCAR_031187 Daucus carota HOM05D003867 ORTHO05D004593 1.7e-261 905.6 485 90.1
Sp6g34370 Schrenkiella parvula HOM05D003867 ORTHO05D004593 1.7e-261 905.6 487 91.4
THA.LOC104819362 Tarenaya hassleriana HOM05D003867 ORTHO05D004593 2.2e-261 905.2 487 91.2
BcaB01g05588 Brassica carinata HOM05D003867 ORTHO05D004593 3.7e-261 904.4 487 91.2
A03p03890 Brassica napus HOM05D003867 ORTHO05D004593 3.7e-261 904.4 488 90.2
BolC9t59588H Brassica oleracea HOM05D003867 ORTHO05D004593 3.7e-261 904.4 486 91.2
Eucgr.H04659 Eucalyptus grandis HOM05D003867 ORTHO05D004593 3.7e-261 904.4 487 91.6
MSTRG.7988 Avicennia marina HOM05D003867 ORTHO05D004593 4.8e-261 904.0 486 90.7
BcaB08g37249 Brassica carinata HOM05D003867 ORTHO05D004593 6.3e-261 903.7 487 91.4
MBI11_g06772_MAGBIO Magnolia biondii HOM05D003867 ORTHO05D004593 6.3e-261 903.7 485 89.3
Peaxi162Scf00449g00825 Petunia axillaris HOM05D003867 ORTHO05D004593 6.3e-261 903.7 479 91.2
PSO063G4816 Papaver somniferum HOM05D003867 ORTHO05D004593 1.1e-260 902.9 487 90.8
Lsat_1_v5_gn_4_184020 Lactuca sativa HOM05D003867 ORTHO05D004593 1.8e-260 902.1 486 90.5
PSO782G1516 Papaver somniferum HOM05D003867 ORTHO05D004593 5.3e-260 900.6 487 90.3
Ah.03g133960 Amaranthus hybridus HOM05D003867 ORTHO05D004593 7.0e-260 900.2 482 89.6
C09p68410 Brassica napus HOM05D003867 ORTHO05D004593 7.0e-260 900.2 489 91.0
HanXRQChr15g0486841 Helianthus annuus HOM05D003867 ORTHO05D004593 9.1e-260 899.8 480 90.2
BolC3t12971H Brassica oleracea HOM05D003867 ORTHO05D004593 1.2e-259 899.4 484 91.1
CAN.G206.61 Capsicum annuum HOM05D003867 ORTHO05D004593 1.6e-259 899.0 485 89.7
THA.LOC104818400 Tarenaya hassleriana HOM05D003867 ORTHO05D004593 5.9e-259 897.1 486 90.9
Os07g0645400 Oryza sativa ssp. japonica HOM05D003867 ORTHO05D004593 5.0e-258 894.0 490 91.2
Rhsim12G0103900 Rhododendron simsii HOM05D003867 ORTHO05D004593 1.5e-257 892.5 474 90.9
SGA_v2.0_scaffold63G21760 Striga asiatica HOM05D003867 ORTHO05D004593 1.9e-257 892.1 486 89.5
SGA_v2.0_scaffold347G49568 Striga asiatica HOM05D003867 ORTHO05D004593 4.2e-257 891.0 486 89.3
BraA03t09737Z Brassica rapa HOM05D003867 ORTHO05D004593 1.6e-256 889.0 485 90.5
Ciclev10033600m.g Citrus clementina HOM05D003867 ORTHO05D004593 2.7e-256 888.3 437 95.4
Sc04g0010000 Simmondsia chinensis HOM05D003867 ORTHO05D004593 1.0e-255 886.3 479 90.4
Zm00001eb329270 Zea mays HOM05D003867 ORTHO05D004593 1.4e-255 885.9 482 91.3
Zm00001eb110430 Zea mays HOM05D003867 ORTHO05D004593 2.3e-255 885.2 483 90.7
ATR0665G595 Amborella trichopoda HOM05D003867 ORTHO05D004593 2.0e-254 882.1 483 88.4
ATR0564G372 Amborella trichopoda HOM05D003867 ORTHO05D004593 9.7e-254 879.8 483 88.2
Cc11_g16710 Coffea canephora HOM05D003867 ORTHO05D004593 2.0e-251 872.1 460 90.9
SEGI_02035 Sequoiadendron giganteum HOM05D003867 ORTHO05D004593 4.5e-251 870.9 484 88.8
SMO141G0212 Selaginella moellendorffii HOM05D003867 ORTHO05D004593 4.7e-248 860.9 436 92.9
Pp3c12_4050 Physcomitrium patens HOM05D003867 ORTHO05D004593 5.7e-246 854.0 430 93.0
Pp3c4_17990 Physcomitrium patens HOM05D003867 ORTHO05D004593 6.3e-245 850.5 430 92.6
AagrBONN_evm.TU.Sc2ySwM_117.2067 Anthoceros agrestis HOM05D003867 ORTHO05D004593 1.1e-244 849.7 436 90.8
Mapoly0052s0094 Marchantia polymorpha HOM05D003867 ORTHO05D004593 1.4e-244 849.4 439 91.3
HanXRQChr15g0475281 Helianthus annuus HOM05D003867 ORTHO05D004593 2.0e-243 845.5 433 90.1
CiPaw.06G100100 Carya illinoinensis HOM05D003867 ORTHO05D004593 8.0e-240 833.6 408 95.8
CBR_g4558 Chara braunii HOM05D003867 ORTHO05D004593 8.0e-240 833.6 434 89.2
Lsat_1_v5_gn_0_47760 Lactuca sativa HOM05D003867 ORTHO05D004593 1.2e-238 829.7 431 88.4
arahy.Tifrunner.gnm1.ann1.IM3BGM Arachis hypogaea HOM05D003867 ORTHO05D004593 2.2e-237 825.5 407 95.6
AUR62024144 Chenopodium quinoa HOM05D003867 ORTHO05D004593 1.4e-236 822.8 406 94.3
AUR62005586 Chenopodium quinoa HOM05D003867 ORTHO05D004593 5.4e-236 820.8 405 94.3
unitig_21.g20878 Utricularia gibba HOM05D003867 ORTHO05D004593 7.0e-236 820.5 407 94.6
MCO16G634 Micromonas commoda HOM05D003867 ORTHO05D004593 1.8e-228 795.8 433 85.7
CDE02G4050 Ceratophyllum demersum HOM05D003867 ORTHO05D004593 5.0e-226 787.7 486 79.8
Dinv37748 Davidia involucrata HOM05D003867 ORTHO05D004593 7.3e-225 783.9 384 96.4
Sed0024813 Sechium edule HOM05D003867 ORTHO05D004593 4.9e-221 771.2 481 82.7
CBR_g30767 Chara braunii HOM05D003867 ORTHO05D004593 5.4e-220 767.7 420 83.3
PRCOL_00003927 Prasinoderma coloniale HOM05D003867 ORTHO05D004593 4.6e-219 764.6 427 82.2
Cre10.g422600 Chlamydomonas reinhardtii HOM05D003867 ORTHO05D004593 1.1e-217 760.0 436 81.4
Dinv39063 Davidia involucrata HOM05D003867 ORTHO05D004593 8.3e-213 743.8 395 90.1
Actinidia08082 Actinidia chinensis HOM05D003867 ORTHO05D004593 1.5e-206 723.0 393 89.1
Nn7g37842 Nelumbo nucifera HOM05D003867 ORTHO05D004593 2.0e-190 669.5 346 91.6
SGA_v2.0_scaffold1484G53963 Striga asiatica HOM05D003867 ORTHO05D004593 9.9e-190 667.2 369 88.3
Haze_26697 Corylus avellana HOM05D003867 ORTHO05D004593 2.4e-183 646.0 395 74.2
FAN17G1814 Fragaria x ananassa HOM05D003867 ORTHO05D004593 4.5e-182 641.7 486 69.3
HPP92_000985 Vanilla planifolia HOM05D003867 ORTHO05D004593 3.9e-178 628.6 315 93.7
FAN12G0392 Fragaria x ananassa HOM05D003867 ORTHO05D004593 3.4e-174 615.5 487 67.4
FAN22G0799 Fragaria x ananassa HOM05D003867 ORTHO05D004593 4.9e-173 611.7 486 66.9
FAN07G1251 Fragaria x ananassa HOM05D003867 ORTHO05D004593 3.5e-171 605.5 486 66.9
unitig_744.g24299 Utricularia gibba HOM05D003867 ORTHO05D004593 1.2e-166 590.5 331 88.8
Nn3g20865 Nelumbo nucifera HOM05D003867 ORTHO05D004593 6.5e-149 531.6 279 90.0
Actinidia20690 Actinidia chinensis HOM05D003867 ORTHO05D004593 8.2e-144 514.6 351 74.1
Haze_26928 Corylus avellana HOM05D003867 ORTHO05D004593 3.8e-125 452.6 276 75.0
TAR629G2520 Trochodendron aralioides HOM05D003867 ORTHO05D004593 1.2e-115 421.0 203 97.0
Aqoxy3G01811 Aquilegia oxysepala HOM05D003867 ORTHO05D004593 1.8e-98 364.0 180 93.3
Actinidia09668 Actinidia chinensis HOM05D003867 ORTHO05D004593 4.4e-97 359.4 222 79.3
TAR629G2231 Trochodendron aralioides HOM05D003867 ORTHO05D004593 4.3e-92 342.8 172 94.2
CSS0023173 Camellia sinensis var. sinensis HOM05D003867 ORTHO05D004593 1.1e-90 338.2 169 94.1
Nitab4.5_0000581g0020 Nicotiana tabacum HOM05D003867 ORTHO05D004593 5.6e-84 315.8 485 41.6
Atru.chr11.2286 Acer truncatum HOM05D003867 ORTHO05D004593 1.6e-75 287.7 146 91.8
Lj6P823T18 Lonicera japonica HOM05D003867 ORTHO05D004593 5.1e-69 266.2 146 86.3
unitig_744.g24298 Utricularia gibba HOM05D003867 ORTHO05D004593 5.3e-66 256.1 127 96.1
HPP92_000984 Vanilla planifolia HOM05D003867 ORTHO05D004593 5.8e-65 252.7 164 81.1
MD16G1114900 Malus domestica HOM05D003867 ORTHO05D004593 2.7e-62 243.8 127 87.4
GSVIVG01020401001 Vitis vinifera HOM05D003867 ORTHO05D004593 3.9e-61 240.0 147 85.7
Aqoxy84s003 Aquilegia oxysepala HOM05D003867 ORTHO05D004593 2.5e-55 220.7 259 44.8
MD16G1114800 Malus domestica HOM05D003867 ORTHO05D004593 1.3e-51 208.4 100 95.0
Nn8g40622 Nelumbo nucifera HOM05D003867 ORTHO05D004593 1.1e-50 205.3 102 94.1
Actinidia09669 Actinidia chinensis HOM05D003867 ORTHO05D004593 5.3e-50 203.0 127 81.9
BcaC03g13233 Brassica carinata HOM05D003155 ORTHO05D012487 2.8e-35 154.1 102 75.5
C02p03650 Brassica napus HOM05D003867 ORTHO05D004593 4.8e-35 153.3 77 94.8
BolC2t06324H Brassica oleracea HOM05D003867 ORTHO05D004593 4.8e-35 153.3 77 94.8
Potri.008G177801 Populus trichocarpa HOM05D003867 ORTHO05D004593 1.1e-34 152.1 108 67.6
BcaC03g13232 Brassica carinata HOM05D003867 ORTHO05D004593 1.4e-29 135.2 69 95.7
Duzib128G1406 Durio zibethinus HOM05D003867 ORTHO05D004593 8.8e-29 132.5 197 38.1
FAN03G1235 Fragaria x ananassa HOM05D003867 ORTHO05D004593 7.4e-28 129.4 70 87.1
Nn1g01167 Nelumbo nucifera HOM05D003867 ORTHO05D004593 1.1e-26 125.6 65 89.2
Nn1g01168 Nelumbo nucifera HOM05D003867 ORTHO05D004593 1.1e-26 125.6 65 89.2
FAN15G0422 Fragaria x ananassa HOM05D003867 ORTHO05D004593 3.1e-26 124.0 67 85.1
FAN07G1961 Fragaria x ananassa HOM05D003867 ORTHO05D004593 3.5e-25 120.6 66 84.8
FAN08G0425 Fragaria x ananassa HOM05D003867 ORTHO05D004593 4.5e-25 120.2 66 84.8
Pp3c3_8640 Physcomitrium patens HOM05D003867 ORTHO05D004593 4.7e-22 110.2 83 67.5
GSVIVG01013345001 Vitis vinifera HOM05D003867 ORTHO05D004593 1.2e-20 105.5 67 67.2
Atru.chr11.2285 Acer truncatum HOM05D003867 ORTHO05D004593 2.0e-20 104.8 67 70.1
Pp3c13_10840 Physcomitrium patens HOM05D003867 ORTHO05D004593 1.2e-17 95.5 48 91.7
Hund25436 Selenicereus undatus HOM05D000424 ORTHO05D008586 5.0e-16 90.1 168 35.7
FvH4_1g23805 Fragaria vesca HOM05D000280 ORTHO05D000632 3.4e-12 77.4 69 58.0
FvH4_3g23161 Fragaria vesca HOM05D011771 ORTHO05D014214 9.8e-12 75.9 72 55.6
FvH4_3g31747 Fragaria vesca HOM05D011771 ORTHO05D014214 2.2e-11 74.7 72 55.6
FvH4_7g28392 Fragaria vesca HOM05D003867 ORTHO05D196806 1.2e-09 68.9 61 59.0
Duzib052G0593 Durio zibethinus HOM05D000222 ORTHO05D001350 6.1e-06 56.6 40 65.0
Nitab4.5_0027010g0010 Nicotiana tabacum HOM05D003867 ORTHO05D004593 6.1e-06 56.6 61 62.3


User provided reference genes

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