Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0026101 Sechium edule HOM05D006092 ORTHO05D007508 1.3e-79 299.7 155 100.0
MELO3C014124.2 Cucumis melo HOM05D006092 ORTHO05D007508 1.1e-62 243.4 154 81.8
CsaV3_3G004330 Cucumis sativus L. HOM05D006092 ORTHO05D007508 5.6e-62 241.1 154 80.5
ClCG10G004510 Citrullus lanatus HOM05D006092 ORTHO05D007508 1.1e-60 236.9 154 80.5
Cfa016959 Carpinus fangiana HOM05D006092 ORTHO05D007508 3.0e-55 218.8 159 73.6
Atru.chr2.3894 Acer truncatum HOM05D006092 ORTHO05D007508 8.6e-55 217.2 153 72.5
Cpa.g.sc12.69 Carica papaya HOM05D006092 ORTHO05D007508 1.9e-54 216.1 157 72.6
MD03G1042800 Malus domestica HOM05D006092 ORTHO05D007508 3.6e-53 211.8 158 70.9
QL08p000538 Quercus lobata HOM05D006092 ORTHO05D007508 6.2e-53 211.1 160 71.9
Sed0012341 Sechium edule HOM05D006092 ORTHO05D007508 6.2e-53 211.1 152 73.0
PGR031G3987 Punica granatum HOM05D006092 ORTHO05D007508 1.8e-52 209.5 160 69.4
A05p17350 Brassica napus HOM05D006092 ORTHO05D007508 5.2e-52 208.0 157 70.1
BraA05t20631Z Brassica rapa HOM05D006092 ORTHO05D007508 5.2e-52 208.0 157 70.1
BcaC08g44210 Brassica carinata HOM05D006092 ORTHO05D007508 6.8e-52 207.6 158 69.0
C06p16180 Brassica napus HOM05D006092 ORTHO05D007508 6.8e-52 207.6 158 69.0
BolC6t36815H Brassica oleracea HOM05D006092 ORTHO05D007508 6.8e-52 207.6 158 69.0
Prupe.6G035200 Prunus persica HOM05D006092 ORTHO05D007508 6.8e-52 207.6 161 70.2
Solyc07g066150.1 Solanum lycopersicum HOM05D006092 ORTHO05D007508 8.9e-52 207.2 136 78.7
Sopen07g034330 Solanum pennellii HOM05D006092 ORTHO05D007508 8.9e-52 207.2 136 78.7
BcaC08g43644 Brassica carinata HOM05D006092 ORTHO05D007508 1.2e-51 206.8 158 70.3
A06p00060 Brassica napus HOM05D006092 ORTHO05D007508 1.2e-51 206.8 158 70.3
C06p10630 Brassica napus HOM05D006092 ORTHO05D007508 1.2e-51 206.8 158 70.3
BolC6t36143H Brassica oleracea HOM05D006092 ORTHO05D007508 1.2e-51 206.8 158 70.3
BraA06t23221Z Brassica rapa HOM05D006092 ORTHO05D007508 1.2e-51 206.8 158 70.3
Nn1g07635 Nelumbo nucifera HOM05D006092 ORTHO05D007508 1.2e-51 206.8 168 65.5
FAN25G2470 Fragaria x ananassa HOM05D006092 ORTHO05D007508 2.0e-51 206.1 158 69.0
Glyma.06G321900 Glycine max HOM05D006092 ORTHO05D007508 2.0e-51 206.1 136 76.5
CANSAT11G0425 Cannabis sativa HOM05D006092 ORTHO05D007508 2.6e-51 205.7 165 70.9
Oeu013004.1 Olea europaea HOM05D006092 ORTHO05D007508 2.6e-51 205.7 154 70.1
Sabra16G0320400 Salix brachista HOM05D006092 ORTHO05D007508 2.6e-51 205.7 132 79.5
A08p00380 Brassica napus HOM05D006092 ORTHO05D007508 3.4e-51 205.3 157 69.4
BraA08t32097Z Brassica rapa HOM05D006092 ORTHO05D007508 3.4e-51 205.3 157 69.4
Glyma.04G112800 Glycine max HOM05D006092 ORTHO05D007508 3.4e-51 205.3 157 69.4
Phvul.005G004000 Phaseolus vulgaris HOM05D006092 ORTHO05D007508 3.4e-51 205.3 157 70.7
Potri.001G471900 Populus trichocarpa HOM05D006092 ORTHO05D007508 4.4e-51 204.9 132 78.8
Potri.011G168700 Populus trichocarpa HOM05D006092 ORTHO05D007508 4.4e-51 204.9 132 79.5
PGSC0003DMG400022249 Solanum tuberosum HOM05D006092 ORTHO05D007508 4.4e-51 204.9 154 68.8
Thecc.07G001800 Theobroma cacao HOM05D006092 ORTHO05D007508 4.4e-51 204.9 155 69.7
Carub.0001s4419 Capsella rubella HOM05D006092 ORTHO05D007508 5.8e-51 204.5 158 70.3
SalBow8G3834 Salvia bowleyana HOM05D006092 ORTHO05D007508 5.8e-51 204.5 139 77.0
RcHm_v2.0_Chr5g0074661 Rosa chinensis HOM05D006092 ORTHO05D007508 7.6e-51 204.1 158 68.4
Sabra11G0138000 Salix brachista HOM05D006092 ORTHO05D007508 7.6e-51 204.1 131 79.4
Haze_09914 Corylus avellana HOM05D006092 ORTHO05D007508 9.9e-51 203.8 157 70.1
Aa31LG10G560 Aethionema arabicum HOM05D006092 ORTHO05D007508 2.2e-50 202.6 154 69.5
BcaC01g01548 Brassica carinata HOM05D006092 ORTHO05D007508 2.2e-50 202.6 158 69.0
BolC3t21605H Brassica oleracea HOM05D006092 ORTHO05D007508 2.2e-50 202.6 158 69.0
FvH4_3g41620 Fragaria vesca HOM05D006092 ORTHO05D007508 2.2e-50 202.6 158 68.4
FAN11G0712 Fragaria x ananassa HOM05D006092 ORTHO05D007508 2.2e-50 202.6 158 68.4
SGA_v2.0_scaffold186G40234 Striga asiatica HOM05D006092 ORTHO05D007508 2.2e-50 202.6 136 77.9
BcaB04g16937 Brassica carinata HOM05D006092 ORTHO05D007508 2.9e-50 202.2 152 69.7
unitig_37.g11908 Utricularia gibba HOM05D006092 ORTHO05D007508 2.9e-50 202.2 135 76.3
VMungo1080G0991 Vigna mungo HOM05D006092 ORTHO05D007508 3.8e-50 201.8 159 68.6
C03p93010 Brassica napus HOM05D006092 ORTHO05D007508 4.9e-50 201.4 158 68.4
Thhalv10011835m.g Eutrema salsugineum HOM05D006092 ORTHO05D007508 6.4e-50 201.1 159 67.9
BcaB02g10807 Brassica carinata HOM05D006092 ORTHO05D007508 8.4e-50 200.7 160 68.1
BcaB07g33193 Brassica carinata HOM05D006092 ORTHO05D007508 8.4e-50 200.7 159 69.2
Oeu006265.1 Olea europaea HOM05D006092 ORTHO05D007508 8.4e-50 200.7 154 68.8
TWI38G1372 Tripterygium wilfordii HOM05D006092 ORTHO05D007508 8.4e-50 200.7 154 69.5
TWI39G1159 Tripterygium wilfordii HOM05D006092 ORTHO05D007508 1.1e-49 200.3 154 69.5
CAN.G623.73 Capsicum annuum HOM05D006092 ORTHO05D007508 1.4e-49 199.9 140 76.4
Gohir.A13G128600 Gossypium hirsutum HOM05D006092 ORTHO05D007508 1.4e-49 199.9 158 70.3
Gorai.013G148000 Gossypium raimondii HOM05D006092 ORTHO05D007508 1.4e-49 199.9 158 70.3
THA.LOC104810303 Tarenaya hassleriana HOM05D006092 ORTHO05D007508 1.4e-49 199.9 156 69.9
Gorai.009G454900 Gossypium raimondii HOM05D006092 ORTHO05D007508 1.9e-49 199.5 157 68.8
GSVIVG01014842001 Vitis vinifera HOM05D006092 ORTHO05D007508 1.9e-49 199.5 158 69.0
Lalb_Chr18g0048631 Lupinus albus HOM05D006092 ORTHO05D007508 2.4e-49 199.1 137 72.3
Ciclev10009769m.g Citrus clementina HOM05D006092 ORTHO05D007508 3.2e-49 198.7 155 72.3
PSO063G2976 Papaver somniferum HOM05D006092 ORTHO05D007508 3.2e-49 198.7 162 67.9
PSO782G4285 Papaver somniferum HOM05D006092 ORTHO05D007508 3.2e-49 198.7 162 67.9
unitig_92.g28271 Utricularia gibba HOM05D006092 ORTHO05D007508 3.2e-49 198.7 132 78.0
AT1G55670 Arabidopsis thaliana HOM05D006092 ORTHO05D007508 4.2e-49 198.4 157 66.9
Gohir.A04G001100 Gossypium hirsutum HOM05D006092 ORTHO05D007508 4.2e-49 198.4 157 68.2
Lj3g0000125 Lotus japonicus HOM05D006092 ORTHO05D007508 4.2e-49 198.4 157 67.5
AL1G63740 Arabidopsis lyrata HOM05D006092 ORTHO05D007508 5.4e-49 198.0 158 66.5
Gohir.D13G132000 Gossypium hirsutum HOM05D006092 ORTHO05D007508 5.4e-49 198.0 158 69.6
THA.LOC104822703 Tarenaya hassleriana HOM05D006092 ORTHO05D007508 7.1e-49 197.6 160 68.8
EL10Ac3g07451 Beta vulgaris HOM05D006092 ORTHO05D007508 1.2e-48 196.8 133 75.9
CARHR045350 Cardamine hirsuta HOM05D006092 ORTHO05D007508 1.2e-48 196.8 159 67.9
Eucgr.F03646 Eucalyptus grandis HOM05D006092 ORTHO05D007508 1.2e-48 196.8 139 74.8
TPR.G16714 Trifolium pratense HOM05D006092 ORTHO05D007508 2.1e-48 196.1 134 74.6
Psat5g231800 Pisum sativum HOM05D006092 ORTHO05D007508 3.5e-48 195.3 157 66.2
Ah.04g149440 Amaranthus hybridus HOM05D006092 ORTHO05D007508 7.8e-48 194.1 133 74.4
CDE05G1532 Ceratophyllum demersum HOM05D006092 ORTHO05D007508 7.8e-48 194.1 162 65.4
CDE11G0224 Ceratophyllum demersum HOM05D006092 ORTHO05D007508 7.8e-48 194.1 166 63.9
arahy.Tifrunner.gnm1.ann1.4PD0PP Arachis hypogaea HOM05D006092 ORTHO05D007508 1.0e-47 193.7 158 66.5
Sc07g0002210 Simmondsia chinensis HOM05D006092 ORTHO05D007508 1.0e-47 193.7 157 65.6
Lj8P183T26 Lonicera japonica HOM05D006092 ORTHO05D007508 1.3e-47 193.4 108 86.1
AUR62020866 Chenopodium quinoa HOM05D006092 ORTHO05D007508 1.7e-47 193.0 108 84.3
AUR62018553 Chenopodium quinoa HOM05D006092 ORTHO05D007508 3.0e-47 192.2 104 87.5
ECA246G4981 Erigeron canadensis HOM05D006092 ORTHO05D007508 3.9e-47 191.8 140 73.6
Lsat_1_v5_gn_5_381 Lactuca sativa HOM05D006092 ORTHO05D007508 3.9e-47 191.8 139 74.8
CARHR087970 Cardamine hirsuta HOM05D006092 ORTHO05D007508 5.1e-47 191.4 156 66.7
COL.COLO4_07787 Corchorus olitorius HOM05D006092 ORTHO05D007508 5.1e-47 191.4 112 84.8
Manes.01G006400 Manihot esculenta HOM05D006092 ORTHO05D007508 5.1e-47 191.4 131 75.6
Rhsim04G0007400 Rhododendron simsii HOM05D006092 ORTHO05D007508 5.1e-47 191.4 152 69.1
MBI14_g12737_MAGBIO Magnolia biondii HOM05D006092 ORTHO05D007508 6.6e-47 191.0 165 63.6
Nitab4.5_0001622g0160 Nicotiana tabacum HOM05D006092 ORTHO05D007508 6.6e-47 191.0 139 74.1
Nitab4.5_0000611g0110 Nicotiana tabacum HOM05D006092 ORTHO05D007508 8.7e-47 190.7 156 69.9
Nitab4.5_0000611g0120 Nicotiana tabacum HOM05D006092 ORTHO05D007508 8.7e-47 190.7 158 69.6
Aqoxy4G02265 Aquilegia oxysepala HOM05D006092 ORTHO05D007508 1.5e-46 189.9 163 63.8
Migut.M01583 Erythranthe guttata HOM05D006092 ORTHO05D007508 2.5e-46 189.1 139 72.7
HanXRQChr08g0232881 Helianthus annuus HOM05D006092 ORTHO05D007508 3.3e-46 188.7 142 71.1
MBI15_g47946_MAGBIO Magnolia biondii HOM05D006092 ORTHO05D007508 4.3e-46 188.3 165 63.0
MBI15_g47073_MAGBIO Magnolia biondii HOM05D006092 ORTHO05D007508 7.3e-46 187.6 144 70.1
HanXRQChr05g0160351 Helianthus annuus HOM05D006092 ORTHO05D007508 1.3e-45 186.8 131 74.0
ATR0751G135 Amborella trichopoda HOM05D006092 ORTHO05D007508 3.6e-45 185.3 163 63.2
Zm00001eb316290 Zea mays HOM05D006092 ORTHO05D007508 8.1e-45 184.1 130 70.0
HPP92_022812 Vanilla planifolia HOM05D006092 ORTHO05D007508 1.1e-44 183.7 137 70.1
Os09g0481200 Oryza sativa ssp. japonica HOM05D006092 ORTHO05D007508 1.2e-43 180.3 136 65.4
Zm00001eb101660 Zea mays HOM05D006092 ORTHO05D007508 4.4e-43 178.3 103 81.6
Medtr3g010000 Medicago truncatula HOM05D006092 ORTHO05D007508 1.3e-39 166.8 157 57.3
SEGI_13197 Sequoiadendron giganteum HOM05D006092 ORTHO05D007508 1.3e-39 166.8 136 64.0
Dinv40914 Davidia involucrata HOM05D006092 ORTHO05D007508 4.8e-37 158.3 133 63.2
Nitab4.5_0000611g0130 Nicotiana tabacum HOM05D006092 ORTHO05D007508 4.8e-37 158.3 102 77.5
CiPaw.11G210500 Carya illinoinensis HOM05D006092 ORTHO05D007508 8.1e-37 157.5 162 58.0
SMO353G0046 Selaginella moellendorffii HOM05D006092 ORTHO05D007508 1.2e-32 143.7 97 68.0
Pp3c15_5850 Physcomitrium patens HOM05D006092 ORTHO05D007508 1.1e-30 137.1 135 51.9
Pp3c9_15440 Physcomitrium patens HOM05D006092 ORTHO05D007508 1.5e-30 136.7 135 50.4
AagrBONN_evm.TU.Sc2ySwM_228.5128 Anthoceros agrestis HOM05D006092 ORTHO05D007508 3.3e-30 135.6 94 68.1
Sp1g41280 Schrenkiella parvula HOM05D006092 ORTHO05D007508 6.2e-29 131.3 157 51.6
Mapoly0038s0054 Marchantia polymorpha HOM05D006092 ORTHO05D007508 1.1e-28 130.6 135 52.6
CBR_g28070 Chara braunii HOM05D006092 ORTHO05D007508 1.8e-28 129.8 161 47.2
TAR627G0509 Trochodendron aralioides HOM05D006092 ORTHO05D007508 1.0e-23 114.0 72 75.0
PGSC0003DMG400006702 Solanum tuberosum HOM05D006092 ORTHO05D007508 2.8e-21 105.9 123 52.0
EL10As5g23536 Beta vulgaris HOM05D006092 ORTHO05D007508 6.5e-18 94.7 55 81.8
EL10Ac3g06625 Beta vulgaris HOM05D006092 ORTHO05D007508 1.4e-17 93.6 53 83.0
EL10Ac5g10941 Beta vulgaris HOM05D006092 ORTHO05D007508 1.4e-17 93.6 53 83.0
PRCOL_00006984 Prasinoderma coloniale HOM05D006092 ORTHO05D007508 5.5e-17 91.7 90 50.0
MCO01G478 Micromonas commoda HOM05D006092 ORTHO05D007508 7.9e-16 87.8 86 53.5
Cre12.g560950 Chlamydomonas reinhardtii HOM05D006092 ORTHO05D007508 5.3e-12 75.1 124 37.9


User provided reference genes

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