Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0026091 Sechium edule HOM05D004018 ORTHO05D004408 4.4e-303 1043.9 556 100.0
ClCG09G006910 Citrullus lanatus HOM05D004018 ORTHO05D004408 1.6e-151 540.4 627 56.8
MELO3C015856.2 Cucumis melo HOM05D004018 ORTHO05D004408 6.3e-148 528.5 643 55.4
Sed0023986 Sechium edule HOM05D004018 ORTHO05D004408 6.3e-148 528.5 631 54.2
CsaV3_7G028620 Cucumis sativus L. HOM05D004018 ORTHO05D004408 2.7e-127 459.9 612 50.5
Cfa006111 Carpinus fangiana HOM05D004018 ORTHO05D004408 4.4e-93 346.3 641 41.0
Haze_04739 Corylus avellana HOM05D004018 ORTHO05D004408 2.0e-85 320.9 667 38.8
Duzib138G0587 Durio zibethinus HOM05D004018 ORTHO05D004408 1.1e-83 315.1 655 39.4
QL12p022414 Quercus lobata HOM05D004018 ORTHO05D004408 1.1e-83 315.1 644 37.1
Phvul.007G169800 Phaseolus vulgaris HOM05D004018 ORTHO05D004408 1.5e-80 304.7 658 37.4
Gorai.004G215600 Gossypium raimondii HOM05D004018 ORTHO05D004408 2.5e-80 303.9 546 39.7
Gohir.A12G005900 Gossypium hirsutum HOM05D004018 ORTHO05D004408 5.6e-80 302.8 636 38.2
Ciclev10018884m.g Citrus clementina HOM05D004018 ORTHO05D004408 9.6e-80 302.0 357 52.9
Gorai.008G005300 Gossypium raimondii HOM05D004018 ORTHO05D004408 9.6e-80 302.0 633 38.2
Thecc.01G282900 Theobroma cacao HOM05D004018 ORTHO05D004408 1.6e-79 301.2 647 38.2
Prupe.8G244100 Prunus persica HOM05D004018 ORTHO05D004408 3.6e-79 300.1 601 40.9
FAN20G3038 Fragaria x ananassa HOM05D000644 ORTHO05D004408 1.1e-78 298.5 581 41.5
Lalb_Chr21g0306531 Lupinus albus HOM05D004018 ORTHO05D004408 2.4e-78 297.4 628 37.3
Rhsim13G0022700 Rhododendron simsii HOM05D000644 ORTHO05D004408 2.0e-77 294.3 620 38.2
CANSAT25G1423 Cannabis sativa HOM05D004018 ORTHO05D004408 3.4e-77 293.5 602 38.7
Duzib133G0055 Durio zibethinus HOM05D004018 ORTHO05D004408 4.4e-77 293.1 654 37.3
Gohir.D12G005400 Gossypium hirsutum HOM05D004018 ORTHO05D004408 4.4e-77 293.1 636 38.1
FAN27G0494 Fragaria x ananassa HOM05D000644 ORTHO05D004408 5.8e-77 292.7 309 59.2
Atru.chr5.1370 Acer truncatum HOM05D004018 ORTHO05D004408 9.9e-77 292.0 354 52.0
Potri.014G139000 Populus trichocarpa HOM05D004018 ORTHO05D004408 2.2e-76 290.8 523 42.3
THA.LOC104801219 Tarenaya hassleriana HOM05D004018 ORTHO05D004408 6.4e-76 289.3 571 40.8
VMungo0720G2698 Vigna mungo HOM05D004018 ORTHO05D004408 8.4e-76 288.9 633 36.3
Actinidia09153 Actinidia chinensis HOM05D004018 ORTHO05D004408 1.4e-75 288.1 349 50.4
Gohir.A08G185500 Gossypium hirsutum HOM05D004018 ORTHO05D004408 1.4e-75 288.1 615 37.2
PSO170G1481 Papaver somniferum HOM05D004018 ORTHO05D004408 1.9e-75 287.7 569 39.0
TAR365G0909 Trochodendron aralioides HOM05D004018 ORTHO05D004408 1.9e-75 287.7 478 43.7
RcHm_v2.0_Chr6g0291481 Rosa chinensis HOM05D004018 ORTHO05D004408 2.4e-75 287.3 606 39.6
Lalb_Chr02g0142861 Lupinus albus HOM05D004018 ORTHO05D004408 3.2e-75 287.0 638 36.4
GSVIVG01011103001 Vitis vinifera HOM05D004018 ORTHO05D004408 3.2e-75 287.0 319 54.5
Peaxi162Scf00570g00314 Petunia axillaris HOM05D004018 ORTHO05D004408 4.2e-75 286.6 617 37.3
CSS0042185 Camellia sinensis var. sinensis HOM05D004018 ORTHO05D004408 5.4e-75 286.2 349 51.0
MD11G1289200 Malus domestica HOM05D004018 ORTHO05D004408 7.1e-75 285.8 364 51.4
Actinidia00738 Actinidia chinensis HOM05D004018 ORTHO05D004408 9.3e-75 285.4 281 57.7
Nn4g26185 Nelumbo nucifera HOM05D004018 ORTHO05D004408 2.7e-74 283.9 601 37.1
Nitab4.5_0011633g0010 Nicotiana tabacum HOM05D004018 ORTHO05D004408 3.5e-74 283.5 653 36.8
Carub.0006s3419 Capsella rubella HOM05D004018 ORTHO05D004408 4.6e-74 283.1 585 35.9
COL.COLO4_09133 Corchorus olitorius HOM05D004018 ORTHO05D004408 6.0e-74 282.7 628 36.5
TAR365G0933 Trochodendron aralioides HOM05D004018 ORTHO05D004408 7.8e-74 282.3 478 43.9
Medtr1g072560 Medicago truncatula HOM05D004018 ORTHO05D004408 1.0e-73 282.0 477 42.3
FvH4_2g23870 Fragaria vesca HOM05D004018 ORTHO05D004408 1.3e-73 281.6 308 58.1
FAN24G0467 Fragaria x ananassa HOM05D000644 ORTHO05D004408 1.3e-73 281.6 308 58.1
Ca_09771_v3 Cicer arietinum L. HOM05D004018 ORTHO05D004408 5.1e-73 279.6 640 34.8
arahy.Tifrunner.gnm1.ann1.6Q7DFN Arachis hypogaea HOM05D004018 ORTHO05D004408 8.7e-73 278.9 578 37.4
PSO407G0422 Papaver somniferum HOM05D004018 ORTHO05D004408 1.1e-72 278.5 578 38.2
Nitab4.5_0001028g0170 Nicotiana tabacum HOM05D004018 ORTHO05D004408 9.6e-72 275.4 439 43.5
vmacro02552 Vaccinium macrocarpon HOM05D004018 ORTHO05D004408 1.3e-71 275.0 633 36.8
Manes.01G209500 Manihot esculenta HOM05D004018 ORTHO05D004408 1.6e-71 274.6 460 43.9
C02p39650 Brassica napus HOM05D004018 ORTHO05D004408 2.8e-71 273.9 539 38.4
Oeu047882.1 Olea europaea HOM05D004018 ORTHO05D004408 4.8e-71 273.1 590 35.9
A02p25020 Brassica napus HOM05D004018 ORTHO05D004408 6.2e-71 272.7 539 38.0
MD03G1268400 Malus domestica HOM05D004018 ORTHO05D004408 6.2e-71 272.7 397 50.1
BraA02t07491Z Brassica rapa HOM05D004018 ORTHO05D004408 8.1e-71 272.3 539 38.0
TWI14G0752 Tripterygium wilfordii HOM05D004018 ORTHO05D004408 1.1e-70 271.9 374 47.9
Oeu028079.1 Olea europaea HOM05D004018 ORTHO05D004408 1.4e-70 271.6 646 35.6
BcaC03g16187 Brassica carinata HOM05D004018 ORTHO05D004408 1.8e-70 271.2 542 37.8
TPR.G1562 Trifolium pratense HOM05D004018 ORTHO05D004408 1.8e-70 271.2 679 34.8
Thhalv10007330m.g Eutrema salsugineum HOM05D004018 ORTHO05D004408 4.0e-70 270.0 579 38.3
Psat6g061120 Pisum sativum HOM05D004018 ORTHO05D004408 6.9e-70 269.2 677 33.8
Sopen09g026560 Solanum pennellii HOM05D004018 ORTHO05D004408 6.9e-70 269.2 425 41.9
Aqoxy2G03257 Aquilegia oxysepala HOM05D004018 ORTHO05D004408 1.5e-69 268.1 622 36.7
CiPaw.07G093900 Carya illinoinensis HOM05D004018 ORTHO05D004408 1.5e-69 268.1 671 35.2
Solyc09g064860.3 Solanum lycopersicum HOM05D004018 ORTHO05D004408 2.0e-69 267.7 425 41.9
TAR633G0135 Trochodendron aralioides HOM05D004018 ORTHO05D004408 2.6e-69 267.3 629 35.5
TAR636G0803 Trochodendron aralioides HOM05D004018 ORTHO05D004408 2.6e-69 267.3 540 38.1
AT4G02880 Arabidopsis thaliana HOM05D004018 ORTHO05D004408 4.5e-69 266.5 589 35.5
Hma1.2p1_0628F.1_g191955 Hydrangea macrophylla HOM05D004018 ORTHO05D004408 7.6e-69 265.8 329 51.7
Sp6g02920 Schrenkiella parvula HOM05D004018 ORTHO05D004408 7.6e-69 265.8 594 36.4
FAN15G3429 Fragaria x ananassa HOM05D000644 ORTHO05D004408 9.9e-69 265.4 309 55.0
Cpa.g.sc837.2 Carica papaya HOM05D004018 ORTHO05D004408 4.9e-68 263.1 288 55.9
arahy.Tifrunner.gnm1.ann1.BX9H6P Arachis hypogaea HOM05D004018 ORTHO05D004408 6.4e-68 262.7 573 36.5
Eucgr.H01516 Eucalyptus grandis HOM05D004018 ORTHO05D004408 1.4e-67 261.5 606 36.5
MSTRG.12568 Avicennia marina HOM05D004018 ORTHO05D004408 2.4e-67 260.8 641 35.1
CARHR251270 Cardamine hirsuta HOM05D004018 ORTHO05D004408 2.4e-67 260.8 572 37.8
BcaC05g24644 Brassica carinata HOM05D004018 ORTHO05D004408 7.1e-67 259.2 575 36.5
Glyma.10G025000 Glycine max HOM05D004018 ORTHO05D004408 7.1e-67 259.2 467 42.6
TWI59G1189 Tripterygium wilfordii HOM05D004018 ORTHO05D004408 7.1e-67 259.2 364 48.4
AL6G50040 Arabidopsis lyrata HOM05D004018 ORTHO05D004408 1.2e-66 258.5 586 35.3
Gohir.D08G203601 Gossypium hirsutum HOM05D004018 ORTHO05D004408 1.6e-66 258.1 266 56.0
C05p01820 Brassica napus HOM05D003188 ORTHO05D003602 8.7e-65 252.3 569 36.2
CiPaw.08G103600 Carya illinoinensis HOM05D004018 ORTHO05D004408 7.4e-64 249.2 293 51.9
AT1G03290 Arabidopsis thaliana HOM05D004018 ORTHO05D004408 9.6e-64 248.8 604 36.6
SalBow6G7233 Salvia bowleyana HOM05D004018 ORTHO05D004408 9.6e-64 248.8 627 35.2
Cc01_g19730 Coffea canephora HOM05D004018 ORTHO05D004408 2.8e-63 247.3 314 48.7
Thhalv10028568m.g Eutrema salsugineum HOM05D004018 ORTHO05D004408 3.7e-63 246.9 593 35.4
Aa31LG1G9250 Aethionema arabicum HOM05D004018 ORTHO05D004408 4.8e-63 246.5 590 36.4
SalBow4G1908 Salvia bowleyana HOM05D004018 ORTHO05D004408 1.1e-62 245.4 606 36.0
Carub.0001s0240 Capsella rubella HOM05D004018 ORTHO05D004408 3.1e-62 243.8 595 35.6
BolC2t09981H Brassica oleracea HOM05D004018 ORTHO05D004408 5.3e-62 243.0 546 36.1
DCAR_018413 Daucus carota HOM05D004018 ORTHO05D004408 5.3e-62 243.0 546 37.4
Sp1g02290 Schrenkiella parvula HOM05D004018 ORTHO05D004408 2.6e-61 240.7 377 43.2
Glyma.02G148900 Glycine max HOM05D004018 ORTHO05D004408 5.8e-61 239.6 620 33.7
HanXRQChr11g0327641 Helianthus annuus HOM05D004018 ORTHO05D004408 5.8e-61 239.6 573 37.3
MSTRG.18219 Avicennia marina HOM05D004018 ORTHO05D004408 9.9e-61 238.8 422 42.2
Migut.D00269 Erythranthe guttata HOM05D004018 ORTHO05D004408 1.3e-60 238.4 576 35.9
ECA248G1820 Erigeron canadensis HOM05D004018 ORTHO05D004408 4.9e-60 236.5 607 36.6
Lj2A1177T38 Lonicera japonica HOM05D004018 ORTHO05D004408 4.9e-60 236.5 542 36.2
CARHR002590 Cardamine hirsuta HOM05D004018 ORTHO05D004408 3.2e-59 233.8 603 34.3
DCAR_002748 Daucus carota HOM05D004018 ORTHO05D004408 5.5e-59 233.0 607 34.9
BolC5t28960H Brassica oleracea HOM05D003188 ORTHO05D003602 7.1e-59 232.6 578 35.3
BraA03t12255Z Brassica rapa HOM05D004018 ORTHO05D004408 2.1e-58 231.1 571 35.9
AL1G12800 Arabidopsis lyrata HOM05D004018 ORTHO05D004408 2.7e-58 230.7 347 46.1
PGR044G1283 Punica granatum HOM05D004018 ORTHO05D004408 4.6e-58 229.9 620 34.5
A03p30760 Brassica napus HOM05D004018 ORTHO05D004408 1.0e-57 228.8 549 34.8
BraA10t42458Z Brassica rapa HOM05D004018 ORTHO05D004408 2.3e-57 227.6 585 33.8
Lj5g0010123 Lotus japonicus HOM05D004018 ORTHO05D004408 3.9e-57 226.9 335 45.1
HanXRQChr01g0002351 Helianthus annuus HOM05D004018 ORTHO05D004408 7.4e-56 222.6 583 34.6
BolC3t16038H Brassica oleracea HOM05D004018 ORTHO05D004408 1.6e-55 221.5 554 35.0
Eucgr.K03388 Eucalyptus grandis HOM05D004018 ORTHO05D004408 8.2e-55 219.2 629 31.0
C03p37460 Brassica napus HOM05D004018 ORTHO05D004408 6.9e-54 216.1 561 33.5
SGA_v2.0_scaffold258G45767 Striga asiatica HOM05D004018 ORTHO05D004408 2.0e-53 214.5 679 31.2
Hund28856 Selenicereus undatus HOM05D004018 ORTHO05D004408 4.5e-53 213.4 291 49.5
Hund28858 Selenicereus undatus HOM05D004018 ORTHO05D004408 4.5e-53 213.4 291 49.5
BcaC05g24546 Brassica carinata HOM05D004018 ORTHO05D004408 3.8e-52 210.3 194 60.3
AUR62036814 Chenopodium quinoa HOM05D004018 ORTHO05D004408 1.9e-51 208.0 396 39.6
A10p01840 Brassica napus HOM05D003188 ORTHO05D003602 2.5e-51 207.6 582 32.6
Migut.N02157 Erythranthe guttata HOM05D004018 ORTHO05D004408 1.2e-50 205.3 330 44.8
AUR62033708 Chenopodium quinoa HOM05D004018 ORTHO05D004408 1.6e-50 204.9 391 39.4
Atru.chr12.487 Acer truncatum HOM05D004018 ORTHO05D004408 1.3e-49 201.8 237 53.6
Atru.chr12.465 Acer truncatum HOM05D004018 ORTHO05D004408 1.8e-49 201.4 237 53.6
HPP92_003154 Vanilla planifolia HOM05D004018 ORTHO05D004408 8.7e-49 199.1 343 40.5
Sc24g0004120 Simmondsia chinensis HOM05D004018 ORTHO05D004408 5.7e-48 196.4 430 35.3
TAR362G1233 Trochodendron aralioides HOM05D004018 ORTHO05D004408 7.4e-48 196.1 495 35.6
ATR0626G273 Amborella trichopoda HOM05D004018 ORTHO05D004408 3.1e-46 190.7 627 30.3
DCAR_012464 Daucus carota HOM05D000644 ORTHO05D000504 3.1e-46 190.7 521 34.9
EL10Ac7g17209 Beta vulgaris HOM05D004018 ORTHO05D004408 1.9e-43 181.4 433 36.7
CDE05G3031 Ceratophyllum demersum HOM05D004018 ORTHO05D004408 4.6e-42 176.8 529 30.1
Lsat_1_v5_gn_5_187400 Lactuca sativa HOM05D004018 ORTHO05D004408 1.9e-40 171.4 555 31.5
MBI17_g12005_MAGBIO Magnolia biondii HOM05D004018 ORTHO05D004408 2.0e-37 161.4 211 48.8
Zm00001eb287880 Zea mays HOM05D004018 ORTHO05D004408 2.6e-37 161.0 241 43.2
Zm00001eb349530 Zea mays HOM05D004018 ORTHO05D004408 2.6e-37 161.0 630 29.0
SGA_v2.0_scaffold11G05799 Striga asiatica HOM05D004018 ORTHO05D004408 6.5e-36 156.4 537 31.3
Pp3c15_12690 Physcomitrium patens HOM05D004018 ORTHO05D004408 2.3e-33 147.9 412 32.0
Dinv11250 Davidia involucrata HOM05D004018 ORTHO05D004408 1.1e-32 145.6 445 33.5
ECA236G3018 Erigeron canadensis HOM05D004018 ORTHO05D004408 1.3e-31 142.1 235 39.1
HanXRQChr04g0118801 Helianthus annuus HOM05D004018 ORTHO05D004408 2.2e-31 141.4 301 36.5
CARHR005950 Cardamine hirsuta HOM05D004018 ORTHO05D004408 2.8e-31 141.0 379 37.2
Sabra02G0167700 Salix brachista HOM05D004018 ORTHO05D004408 1.1e-30 139.0 424 31.8
Os10g0315400 Oryza sativa ssp. japonica HOM05D004018 ORTHO05D004408 1.8e-30 138.3 284 37.3
Sabra14G0104800 Salix brachista HOM05D004018 ORTHO05D004408 4.5e-29 133.7 408 32.6
Dinv11249 Davidia involucrata HOM05D004018 ORTHO05D004408 3.8e-28 130.6 192 47.9
Mapoly0005s0053 Marchantia polymorpha HOM05D004018 ORTHO05D004408 5.0e-28 130.2 235 35.3
Pp3c9_12210 Physcomitrium patens HOM05D004018 ORTHO05D004408 1.8e-25 121.7 498 27.9
ECA236G2305 Erigeron canadensis HOM05D004018 ORTHO05D004408 9.7e-24 115.9 190 40.5
SMO364G0006 Selaginella moellendorffii HOM05D004018 ORTHO05D004408 3.1e-22 110.9 203 36.9
unitig_0.g1008 Utricularia gibba HOM05D004018 ORTHO05D004408 8.5e-20 102.8 512 27.5
BcaC03g15959 Brassica carinata HOM05D004018 ORTHO05D004408 5.5e-19 100.1 132 48.5
Ah.08g213040 Amaranthus hybridus HOM05D004018 ORTHO05D004408 1.6e-18 98.6 198 39.4
HanXRQChr03g0063801 Helianthus annuus HOM05D004018 ORTHO05D004408 3.6e-18 97.4 189 37.0
MD11G1124600 Malus domestica HOM05D004018 ORTHO05D004408 1.0e-17 95.9 82 64.6
ECA236G2562 Erigeron canadensis HOM05D004018 ORTHO05D004408 1.8e-17 95.1 307 31.9
HanXRQChr03g0063751 Helianthus annuus HOM05D004018 ORTHO05D004408 8.8e-17 92.8 243 34.6
AagrBONN_evm.TU.Sc2ySwM_228.3859 Anthoceros agrestis HOM05D004018 ORTHO05D004408 1.4e-14 85.5 213 30.0
C02p37230 Brassica napus HOM05D004018 ORTHO05D004408 4.5e-13 80.5 91 50.5
BolC2t09733H Brassica oleracea HOM05D004018 ORTHO05D004408 1.9e-11 75.1 59 59.3
ECA247G3795 Erigeron canadensis HOM05D004018 ORTHO05D004408 4.2e-11 73.9 176 31.2
Gohir.D06G055550 Gossypium hirsutum HOM05D004018 ORTHO05D004408 8.0e-10 69.7 105 43.8
SEGI_03888 Sequoiadendron giganteum HOM05D004018 ORTHO05D004408 5.2e-09 67.0 198 33.3
MBI05_g27108_MAGBIO Magnolia biondii HOM05D004018 ORTHO05D004408 6.8e-09 66.6 72 52.8
Gohir.D01G114520 Gossypium hirsutum HOM05D004018 ORTHO05D004408 8.8e-09 66.2 102 44.1
CBR_g40749 Chara braunii HOM05D004018 ORTHO05D004408 5.7e-08 63.5 208 27.4
Os05g0394900 Oryza sativa ssp. japonica HOM05D004018 ORTHO05D004408 2.8e-07 61.2 111 39.6
PGR031G1662 Punica granatum HOM05D004018 ORTHO05D004408 2.8e-07 61.2 115 39.1
Gorai.007G029100 Gossypium raimondii HOM05D004018 ORTHO05D004408 8.3e-07 59.7 148 33.8


User provided reference genes

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