Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0026053 Sechium edule HOM05D006378 ORTHO05D007959 0.0e+00 1776.5 874 100.0
ClCG03G015080 Citrullus lanatus HOM05D006378 ORTHO05D007959 0.0e+00 1559.7 885 86.0
MELO3C015521.2 Cucumis melo HOM05D006378 ORTHO05D007959 0.0e+00 1558.1 874 87.4
CsaV3_1G041050 Cucumis sativus L. HOM05D006378 ORTHO05D007959 0.0e+00 1540.4 876 86.6
QL11p000773 Quercus lobata HOM05D006378 ORTHO05D007959 0.0e+00 1347.4 873 74.5
Cfa002988 Carpinus fangiana HOM05D006378 ORTHO05D007959 0.0e+00 1321.6 877 72.4
GSVIVG01015082001 Vitis vinifera HOM05D006378 ORTHO05D007959 0.0e+00 1320.1 874 72.8
Prupe.7G198800 Prunus persica HOM05D006378 ORTHO05D007959 0.0e+00 1309.3 870 73.0
Ciclev10007418m.g Citrus clementina HOM05D006378 ORTHO05D007959 0.0e+00 1308.9 869 71.3
RcHm_v2.0_Chr2g0094931 Rosa chinensis HOM05D006378 ORTHO05D007959 0.0e+00 1305.0 874 72.2
Sabra06G0111000 Salix brachista HOM05D006378 ORTHO05D007959 0.0e+00 1300.4 871 71.3
Duzib168G0703 Durio zibethinus HOM05D006378 ORTHO05D007959 0.0e+00 1299.6 875 72.5
FAN26G1418 Fragaria x ananassa HOM05D006378 ORTHO05D007959 0.0e+00 1296.2 870 70.9
Potri.006G141900 Populus trichocarpa HOM05D006378 ORTHO05D007959 0.0e+00 1295.4 878 71.3
Manes.03G040400 Manihot esculenta HOM05D006378 ORTHO05D007959 0.0e+00 1295.0 873 71.4
Thecc.09G076800 Theobroma cacao HOM05D006378 ORTHO05D007959 0.0e+00 1294.3 873 72.2
TPR.G28586 Trifolium pratense HOM05D006378 ORTHO05D007959 0.0e+00 1294.3 879 70.9
Eucgr.C03329 Eucalyptus grandis HOM05D006378 ORTHO05D007959 0.0e+00 1292.7 869 70.4
FAN26G3001 Fragaria x ananassa HOM05D006378 ORTHO05D007959 0.0e+00 1291.6 870 70.7
Gohir.A06G076500 Gossypium hirsutum HOM05D006378 ORTHO05D007959 0.0e+00 1286.2 872 71.9
Eucgr.C03264 Eucalyptus grandis HOM05D006378 ORTHO05D007959 0.0e+00 1285.4 869 70.3
Hma1.2p1_0179F.1_g079520 Hydrangea macrophylla HOM05D006378 ORTHO05D007959 0.0e+00 1284.2 881 69.8
Haze_26013 Corylus avellana HOM05D006378 ORTHO05D007959 0.0e+00 1283.9 877 71.0
Medtr2g041640 Medicago truncatula HOM05D006378 ORTHO05D007959 0.0e+00 1283.1 875 70.7
MD15G1217600 Malus domestica HOM05D006378 ORTHO05D007959 0.0e+00 1280.8 875 71.7
Gohir.D06G075500 Gossypium hirsutum HOM05D006378 ORTHO05D007959 0.0e+00 1280.4 872 71.2
Gorai.010G088400 Gossypium raimondii HOM05D006378 ORTHO05D007959 0.0e+00 1279.2 872 71.2
Psat1g134280 Pisum sativum HOM05D006378 ORTHO05D007959 0.0e+00 1278.8 870 70.9
vmacro06342 Vaccinium macrocarpon HOM05D006378 ORTHO05D007959 0.0e+00 1278.1 881 70.1
VMungo1309G1044 Vigna mungo HOM05D006378 ORTHO05D007959 0.0e+00 1277.7 874 70.9
Cpa.g.sc28.38 Carica papaya HOM05D006378 ORTHO05D007959 0.0e+00 1277.3 870 71.1
TWI34G0472 Tripterygium wilfordii HOM05D006378 ORTHO05D007959 0.0e+00 1276.5 874 70.5
Ca_02206_v3 Cicer arietinum L. HOM05D006378 ORTHO05D007959 0.0e+00 1274.2 875 69.9
Lj6g0025012 Lotus japonicus HOM05D006378 ORTHO05D007959 0.0e+00 1274.2 877 70.5
Lalb_Chr08g0232591 Lupinus albus HOM05D006378 ORTHO05D007959 0.0e+00 1273.8 882 69.4
Rhsim03G0227500 Rhododendron simsii HOM05D006378 ORTHO05D007959 0.0e+00 1272.3 875 69.6
Glyma.15G177600 Glycine max HOM05D006378 ORTHO05D007959 0.0e+00 1268.1 871 69.9
Dinv42394 Davidia involucrata HOM05D006378 ORTHO05D007959 0.0e+00 1266.1 873 70.1
PGR044G1219 Punica granatum HOM05D006378 ORTHO05D007959 0.0e+00 1264.2 873 69.6
TAR383G0342 Trochodendron aralioides HOM05D006378 ORTHO05D007959 0.0e+00 1261.9 871 69.8
Phvul.009G227300 Phaseolus vulgaris HOM05D006378 ORTHO05D007959 0.0e+00 1260.7 873 70.1
FAN19G1878 Fragaria x ananassa HOM05D006378 ORTHO05D007959 0.0e+00 1259.6 892 68.2
Lj7C687T7 Lonicera japonica HOM05D006378 ORTHO05D007959 0.0e+00 1257.7 870 69.5
CANSAT56G1041 Cannabis sativa HOM05D006378 ORTHO05D007959 0.0e+00 1256.1 875 69.5
CSS0003361 Camellia sinensis var. sinensis HOM05D006378 ORTHO05D007959 0.0e+00 1253.0 873 69.0
Sc08g0008890 Simmondsia chinensis HOM05D006378 ORTHO05D007959 0.0e+00 1251.5 869 68.7
CSS0014220 Camellia sinensis var. sinensis HOM05D006378 ORTHO05D007959 0.0e+00 1250.3 873 68.8
Thhalv10003638m.g Eutrema salsugineum HOM05D006378 ORTHO05D007959 0.0e+00 1246.1 870 68.4
Cc06_g12180 Coffea canephora HOM05D006378 ORTHO05D007959 0.0e+00 1238.8 875 68.2
Nn8g38637 Nelumbo nucifera HOM05D006378 ORTHO05D007959 0.0e+00 1238.0 874 68.9
Migut.J00925 Erythranthe guttata HOM05D006378 ORTHO05D007959 0.0e+00 1236.1 874 68.6
THA.LOC104826591 Tarenaya hassleriana HOM05D006378 ORTHO05D007959 0.0e+00 1234.9 873 68.2
MSTRG.19459 Avicennia marina HOM05D006378 ORTHO05D007959 0.0e+00 1234.6 870 68.4
Sp7g06720 Schrenkiella parvula HOM05D006378 ORTHO05D007959 0.0e+00 1233.8 871 67.5
Oeu035912.1 Olea europaea HOM05D006378 ORTHO05D007959 0.0e+00 1232.6 867 68.3
Nitab4.5_0009436g0010 Nicotiana tabacum HOM05D006378 ORTHO05D007959 0.0e+00 1229.9 870 67.7
BolC4t25998H Brassica oleracea HOM05D006378 ORTHO05D007959 0.0e+00 1225.3 870 67.6
A04p10600 Brassica napus HOM05D006378 ORTHO05D007959 0.0e+00 1224.9 873 67.7
BcaC02g09569 Brassica carinata HOM05D006378 ORTHO05D007959 0.0e+00 1224.2 870 67.5
C04p44250 Brassica napus HOM05D006378 ORTHO05D007959 0.0e+00 1224.2 870 67.5
BraA04t16723Z Brassica rapa HOM05D006378 ORTHO05D007959 0.0e+00 1223.8 873 67.6
Aqoxy7G04130 Aquilegia oxysepala HOM05D006378 ORTHO05D007959 0.0e+00 1222.2 874 66.4
Sopen07g021350 Solanum pennellii HOM05D006378 ORTHO05D007959 0.0e+00 1222.2 870 66.9
Nitab4.5_0000343g0150 Nicotiana tabacum HOM05D006378 ORTHO05D007959 0.0e+00 1221.5 869 67.5
arahy.Tifrunner.gnm1.ann1.LZ43MP Arachis hypogaea HOM05D006378 ORTHO05D007959 0.0e+00 1221.1 872 67.9
BcaB06g26949 Brassica carinata HOM05D006378 ORTHO05D007959 0.0e+00 1221.1 870 67.4
PGSC0003DMG400019029 Solanum tuberosum HOM05D006378 ORTHO05D007959 0.0e+00 1220.7 870 66.9
Solyc07g041870.3 Solanum lycopersicum HOM05D006378 ORTHO05D007959 0.0e+00 1217.2 870 66.6
arahy.Tifrunner.gnm1.ann1.CBKZ0V Arachis hypogaea HOM05D006378 ORTHO05D007959 0.0e+00 1216.8 869 67.8
MBI19_g16222_MAGBIO Magnolia biondii HOM05D006378 ORTHO05D007959 0.0e+00 1211.8 877 67.0
SGA_v2.0_scaffold91G28112 Striga asiatica HOM05D006378 ORTHO05D007959 0.0e+00 1209.9 873 67.1
HanXRQChr06g0178331 Helianthus annuus HOM05D006378 ORTHO05D007959 0.0e+00 1209.5 870 66.8
SalBow6G1560 Salvia bowleyana HOM05D006378 ORTHO05D007959 0.0e+00 1209.1 869 67.9
AL2G37770 Arabidopsis lyrata HOM05D006378 ORTHO05D007959 0.0e+00 1208.0 871 66.7
AUR62025249 Chenopodium quinoa HOM05D006378 ORTHO05D007959 0.0e+00 1207.6 888 66.2
ECA236G3597 Erigeron canadensis HOM05D006378 ORTHO05D007959 0.0e+00 1205.7 876 65.6
Lsat_1_v5_gn_8_86460 Lactuca sativa HOM05D006378 ORTHO05D007959 0.0e+00 1201.8 877 66.6
Carub.0002s2445 Capsella rubella HOM05D006378 ORTHO05D007959 0.0e+00 1200.3 873 66.1
AT1G77550 Arabidopsis thaliana HOM05D006378 ORTHO05D007959 0.0e+00 1199.5 872 65.9
AUR62028935 Chenopodium quinoa HOM05D006378 ORTHO05D007959 0.0e+00 1199.5 883 66.1
PSO135G0915 Papaver somniferum HOM05D006378 ORTHO05D007959 0.0e+00 1198.3 877 65.0
Hund08780 Selenicereus undatus HOM05D006378 ORTHO05D007959 0.0e+00 1193.3 870 66.2
EL10Ac8g19061 Beta vulgaris HOM05D006378 ORTHO05D007959 0.0e+00 1192.9 872 66.6
Aa31LG2G20840 Aethionema arabicum HOM05D006378 ORTHO05D007959 0.0e+00 1190.3 870 65.6
Ah.09g231620 Amaranthus hybridus HOM05D006378 ORTHO05D007959 0.0e+00 1186.8 872 66.2
DCAR_011949 Daucus carota HOM05D006378 ORTHO05D007959 0.0e+00 1181.8 880 65.0
Peaxi162Scf00127g01816 Petunia axillaris HOM05D006378 ORTHO05D007959 0.0e+00 1170.6 870 65.5
CAN.G62.5 Capsicum annuum HOM05D006378 ORTHO05D007959 0.0e+00 1156.0 827 67.7
Os03g0179000 Oryza sativa ssp. japonica HOM05D006378 ORTHO05D007959 0.0e+00 1137.1 871 63.9
CiPaw.03G206400 Carya illinoinensis HOM05D006378 ORTHO05D007959 0.0e+00 1134.8 752 73.9
HPP92_002164 Vanilla planifolia HOM05D006378 ORTHO05D007959 0.0e+00 1100.5 847 63.4
FvH4_1g08650 Fragaria vesca HOM05D006378 ORTHO05D007959 5.9e-310 1067.4 692 72.4
unitig_578.g15677 Utricularia gibba HOM05D006378 ORTHO05D007959 7.5e-305 1050.4 867 60.6
ATR0598G254 Amborella trichopoda HOM05D006378 ORTHO05D007959 1.1e-303 1046.6 869 58.7
Atru.chr7.1707 Acer truncatum HOM05D006378 ORTHO05D007959 2.4e-303 1045.4 647 75.0
COL.COLO4_18097 Corchorus olitorius HOM05D006378 ORTHO05D007959 6.8e-298 1027.3 870 61.7
CARHR071080 Cardamine hirsuta HOM05D006378 ORTHO05D007959 3.5e-294 1015.0 693 69.4
Mapoly0113s0055 Marchantia polymorpha HOM05D006378 ORTHO05D007959 8.3e-288 993.8 871 55.3
AagrBONN_evm.TU.Sc2ySwM_117.2900 Anthoceros agrestis HOM05D006378 ORTHO05D007959 6.2e-283 977.6 871 54.6
SMO174G0008 Selaginella moellendorffii HOM05D006378 ORTHO05D007959 3.4e-281 971.8 866 55.3
Pp3c6_19960 Physcomitrium patens HOM05D006378 ORTHO05D007959 4.4e-273 944.9 873 52.8
CBR_g12041 Chara braunii HOM05D006378 ORTHO05D007959 5.5e-207 725.3 772 47.5
Actinidia38480 Actinidia chinensis HOM05D006378 ORTHO05D007959 4.9e-155 552.7 389 68.6
Zm00001eb401890 Zea mays HOM05D006378 ORTHO05D007959 1.3e-152 544.7 487 57.3
SEGI_03485 Sequoiadendron giganteum HOM05D006378 ORTHO05D007959 5.2e-141 506.1 473 52.9
FAN28G1488 Fragaria x ananassa HOM05D006378 ORTHO05D007959 2.5e-127 460.7 366 62.0
CAN.G81.12 Capsicum annuum HOM05D006378 ORTHO05D007959 3.3e-87 327.4 309 54.4
CAN.G81.10 Capsicum annuum HOM05D006378 ORTHO05D007959 7.7e-68 263.1 204 63.7
SEGI_37917 Sequoiadendron giganteum HOM05D006378 ORTHO05D007959 9.5e-66 256.1 168 72.0
Psat7g020000 Pisum sativum HOM05D006378 ORTHO05D007959 3.1e-56 224.6 175 64.0
CDE05G1577 Ceratophyllum demersum HOM05D006378 ORTHO05D007959 2.3e-43 181.8 176 51.7
CAN.G81.11 Capsicum annuum HOM05D006378 ORTHO05D007959 5.8e-39 167.2 198 49.5
CDE05G1890 Ceratophyllum demersum HOM05D006378 ORTHO05D007959 2.3e-35 155.2 216 42.1
SHI02337 Sapria himalayana HOM05D006378 ORTHO05D007959 1.4e-29 136.0 149 45.0
Actinidia29932 Actinidia chinensis HOM05D006378 ORTHO05D007959 7.8e-28 130.2 120 57.5
Actinidia29933 Actinidia chinensis HOM05D006378 ORTHO05D007959 6.6e-27 127.1 85 71.8
RcHm_v2.0_Chr2g0095081 Rosa chinensis HOM05D006378 ORTHO05D007959 1.8e-24 119.0 86 68.6
RcHm_v2.0_Chr2g0095091 Rosa chinensis HOM05D006378 ORTHO05D007959 9.0e-24 116.7 69 78.3
SHI02335 Sapria himalayana HOM05D006378 ORTHO05D007959 2.0e-23 115.5 90 62.2
RcHm_v2.0_Chr2g0095101 Rosa chinensis HOM05D006378 ORTHO05D007959 1.9e-21 109.0 88 59.1
SHI02336 Sapria himalayana HOM05D006378 ORTHO05D007959 9.6e-18 96.7 107 48.6
Cre06.g300250 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 4.0e-16 91.3 273 25.6
MCO11G220 Micromonas commoda HOM05D008676 ORTHO05D010936 1.2e-15 89.7 294 25.2
Cre17.g699500 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 2.6e-15 88.6 358 25.4
Mapoly0012s0012 Marchantia polymorpha HOM05D008676 ORTHO05D010936 9.9e-15 86.7 319 26.3
AagrBONN_evm.TU.Sc2ySwM_228.857 Anthoceros agrestis HOM05D008676 ORTHO05D010936 4.9e-14 84.3 331 24.2
CBR_g54068 Chara braunii HOM05D008676 ORTHO05D010936 2.4e-13 82.0 251 24.7
PRCOL_00007033 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 1.2e-12 79.7 310 23.9
MCO03G450 Micromonas commoda HOM05D008676 ORTHO05D010936 1.6e-12 79.3 304 23.7
PRCOL_00004385 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 8.7e-11 73.6 262 23.7
SMO117G0188 Selaginella moellendorffii HOM05D008676 ORTHO05D010936 1.1e-10 73.2 297 24.2
SMO337G0080 Selaginella moellendorffii HOM05D008676 ORTHO05D010936 1.9e-10 72.4 251 25.9
MCO11G738 Micromonas commoda HOM05D008676 ORTHO05D010936 7.4e-10 70.5 305 28.2
SHI02339 Sapria himalayana HOM05D006378 ORTHO05D007959 9.6e-10 70.1 97 39.2
Pp3c1_16240 Physcomitrium patens HOM05D008676 ORTHO05D010936 2.8e-09 68.6 205 25.4
CBR_g51027 Chara braunii HOM05D008676 ORTHO05D010936 1.8e-08 65.9 213 26.8
Cre02.g117350 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 2.4e-08 65.5 213 23.5
Cre02.g146650 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 2.4e-08 65.5 306 24.2
AagrBONN_evm.TU.Sc2ySwM_369.291 Anthoceros agrestis HOM05D008676 ORTHO05D010936 6.9e-08 63.9 175 26.3
PRCOL_00001343 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 1.2e-07 63.2 225 25.8
Actinidia29934 Actinidia chinensis HOM05D006378 ORTHO05D007959 1.5e-07 62.8 33 78.8
MCO05G481 Micromonas commoda HOM05D008676 ORTHO05D010936 1.5e-07 62.8 170 28.2
SHI02338 Sapria himalayana HOM05D006378 ORTHO05D007959 1.3e-06 59.7 67 46.3
MCO10G276 Micromonas commoda HOM05D008676 ORTHO05D010936 4.9e-06 57.8 191 26.7


User provided reference genes

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