Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0025986 Sechium edule HOM05D002452 ORTHO05D006766 0.0e+00 1087.0 570 100.0
MELO3C025646.2 Cucumis melo HOM05D002452 ORTHO05D006766 1.1e-219 766.9 560 75.4
CsaV3_4G033030 Cucumis sativus L. HOM05D002452 ORTHO05D006766 4.5e-218 761.5 521 78.9
ClCG11G017390 Citrullus lanatus HOM05D002452 ORTHO05D006766 6.5e-217 757.7 539 77.2
Cfa019543 Carpinus fangiana HOM05D002452 ORTHO05D006766 4.3e-144 515.8 536 56.7
CiPaw.12G112400 Carya illinoinensis HOM05D002452 ORTHO05D006766 5.7e-136 488.8 542 54.4
vmacro11955 Vaccinium macrocarpon HOM05D002452 ORTHO05D006766 2.1e-135 486.9 549 53.4
QL08p025729 Quercus lobata HOM05D002452 ORTHO05D006766 3.8e-132 476.1 548 52.9
Prupe.4G160000 Prunus persica HOM05D002452 ORTHO05D006766 1.9e-131 473.8 549 53.4
Thecc.07G126400 Theobroma cacao HOM05D002452 ORTHO05D006766 5.7e-128 462.2 534 52.2
Actinidia12591 Actinidia chinensis HOM05D002452 ORTHO05D006766 2.2e-127 460.3 539 51.8
TAR627G0084 Trochodendron aralioides HOM05D002452 ORTHO05D006766 3.7e-127 459.5 539 52.5
Rhsim06G0210300 Rhododendron simsii HOM05D002452 ORTHO05D006766 5.3e-126 455.7 585 48.2
Atru.chr2.2062 Acer truncatum HOM05D002452 ORTHO05D006766 2.6e-125 453.4 548 51.1
GSVIVG01014168001 Vitis vinifera HOM05D002452 ORTHO05D006766 5.9e-125 452.2 525 53.7
CSS0001384 Camellia sinensis var. sinensis HOM05D002452 ORTHO05D006766 1.1e-123 448.0 534 50.6
TWI39G0752 Tripterygium wilfordii HOM05D002452 ORTHO05D006766 1.4e-123 447.6 533 50.7
Dinv18382 Davidia involucrata HOM05D002452 ORTHO05D006766 7.2e-123 445.3 537 52.7
COL.COLO4_17511 Corchorus olitorius HOM05D002452 ORTHO05D006766 1.0e-121 441.4 557 49.6
Ciclev10019497m.g Citrus clementina HOM05D002452 ORTHO05D006766 2.3e-121 440.3 549 51.5
Potri.001G387300 Populus trichocarpa HOM05D002452 ORTHO05D006766 5.7e-120 435.6 537 54.2
Cc05_g10930 Coffea canephora HOM05D002452 ORTHO05D006766 9.7e-120 434.9 523 50.7
TAR626G0804 Trochodendron aralioides HOM05D002452 ORTHO05D006766 4.8e-119 432.6 541 50.8
Lj8C147T4 Lonicera japonica HOM05D002452 ORTHO05D006766 1.1e-118 431.4 567 48.9
Gohir.D01G040900 Gossypium hirsutum HOM05D002452 ORTHO05D006766 3.4e-117 426.4 539 49.4
Glyma.12G231200 Glycine max HOM05D002452 ORTHO05D006766 2.9e-116 423.3 535 49.3
RcHm_v2.0_Chr5g0030441 Rosa chinensis HOM05D002452 ORTHO05D006766 5.0e-116 422.5 576 49.5
arahy.Tifrunner.gnm1.ann1.69X35Q Arachis hypogaea HOM05D002452 ORTHO05D006766 6.5e-116 422.2 536 50.2
Lalb_Chr20g0109181 Lupinus albus HOM05D002452 ORTHO05D006766 6.5e-116 422.2 530 50.6
Gohir.A04G043100 Gossypium hirsutum HOM05D002452 ORTHO05D006766 8.5e-116 421.8 542 49.8
Psat0s2485g0160 Pisum sativum HOM05D002452 ORTHO05D006766 1.9e-115 420.6 543 49.2
Gorai.009G366800 Gossypium raimondii HOM05D002452 ORTHO05D006766 3.2e-115 419.9 543 49.7
Gorai.002G051000 Gossypium raimondii HOM05D002452 ORTHO05D006766 2.1e-114 417.2 540 48.7
Gohir.D05G340400 Gossypium hirsutum HOM05D002452 ORTHO05D006766 1.4e-113 414.5 536 49.4
Lj3g0025969 Lotus japonicus HOM05D002452 ORTHO05D006766 1.4e-113 414.5 545 48.3
arahy.Tifrunner.gnm1.ann1.T9SFGX Arachis hypogaea HOM05D002452 ORTHO05D006766 1.5e-112 411.0 538 49.6
Sopen10g003230 Solanum pennellii HOM05D002452 ORTHO05D006766 7.4e-112 408.7 552 48.9
MD11G1266100 Malus domestica HOM05D002452 ORTHO05D006766 1.7e-111 407.5 547 48.6
Nitab4.5_0000383g0070 Nicotiana tabacum HOM05D002452 ORTHO05D006766 1.7e-111 407.5 527 50.9
Duzib213G0380 Durio zibethinus HOM05D002452 ORTHO05D006766 2.2e-111 407.1 545 48.6
Solyc10g007400.4 Solanum lycopersicum HOM05D002452 ORTHO05D006766 2.8e-111 406.8 555 48.5
Lalb_Chr25g0285731 Lupinus albus HOM05D002452 ORTHO05D006766 4.8e-111 406.0 530 48.9
Peaxi162Scf00692g00318 Petunia axillaris HOM05D002452 ORTHO05D006766 1.1e-110 404.8 527 49.7
Haze_09304 Corylus avellana HOM05D002452 ORTHO05D006766 2.4e-110 403.7 462 53.7
Eucgr.F01252 Eucalyptus grandis HOM05D002452 ORTHO05D006766 3.1e-110 403.3 528 48.7
Atru.chr10.1169 Acer truncatum HOM05D002452 ORTHO05D006766 9.1e-110 401.7 494 51.2
Manes.03G099700 Manihot esculenta HOM05D002452 ORTHO05D006766 4.5e-109 399.4 476 52.3
Medtr2g075820 Medicago truncatula HOM05D002452 ORTHO05D006766 5.9e-109 399.1 544 48.0
CAN.G904.34 Capsicum annuum HOM05D002452 ORTHO05D006766 1.3e-108 397.9 536 49.6
MSTRG.14972 Avicennia marina HOM05D002452 ORTHO05D006766 5.0e-108 396.0 539 47.7
Nn3g21096 Nelumbo nucifera HOM05D002452 ORTHO05D006766 8.5e-108 395.2 571 47.5
TPR.G16056 Trifolium pratense HOM05D002452 ORTHO05D006766 1.1e-107 394.8 555 47.6
FvH4_3g18120 Fragaria vesca HOM05D002452 ORTHO05D006766 4.2e-107 392.9 592 47.1
HanXRQChr15g0495181 Helianthus annuus HOM05D002452 ORTHO05D006766 5.5e-107 392.5 523 47.8
AUR62019605 Chenopodium quinoa HOM05D002452 ORTHO05D006766 9.4e-107 391.7 542 46.5
CANSAT35G1635 Cannabis sativa HOM05D002452 ORTHO05D006766 2.7e-106 390.2 575 46.4
Phvul.005G080800 Phaseolus vulgaris HOM05D002452 ORTHO05D006766 1.4e-105 387.9 537 47.7
Sc03g0010610 Simmondsia chinensis HOM05D002452 ORTHO05D006766 1.4e-105 387.9 541 47.1
Ca_03951_v3 Cicer arietinum L. HOM05D002452 ORTHO05D006766 6.7e-105 385.6 543 47.5
EL10Ac4g08382 Beta vulgaris HOM05D002452 ORTHO05D006766 5.7e-104 382.5 544 46.7
THA.LOC104808089 Tarenaya hassleriana HOM05D002452 ORTHO05D006766 7.5e-104 382.1 525 47.2
VMungo1080G0044 Vigna mungo HOM05D002452 ORTHO05D006766 7.5e-104 382.1 535 48.6
Sp5g33730 Schrenkiella parvula HOM05D002452 ORTHO05D006766 9.7e-104 381.7 520 46.2
DCAR_013269 Daucus carota HOM05D002452 ORTHO05D006766 4.8e-103 379.4 576 45.0
PGR083G1533 Punica granatum HOM05D002452 ORTHO05D006766 4.8e-103 379.4 533 46.9
SGA_v2.0_scaffold181G39753 Striga asiatica HOM05D002452 ORTHO05D006766 1.8e-102 377.5 515 47.2
PGSC0003DMG400021257 Solanum tuberosum HOM05D002452 ORTHO05D006766 3.1e-102 376.7 560 46.8
SalBow1G0777 Salvia bowleyana HOM05D002452 ORTHO05D006766 5.3e-102 375.9 532 46.1
SalBow8G0660 Salvia bowleyana HOM05D002452 ORTHO05D006766 5.3e-102 375.9 532 46.1
Migut.M00711 Erythranthe guttata HOM05D002452 ORTHO05D006766 1.6e-101 374.4 552 44.6
PSO541G2585 Papaver somniferum HOM05D002452 ORTHO05D006766 2.0e-101 374.0 531 46.1
Thhalv10018425m.g Eutrema salsugineum HOM05D002452 ORTHO05D006766 3.5e-101 373.2 518 43.6
SGA_v2.0_scaffold73G24396 Striga asiatica HOM05D002452 ORTHO05D006766 3.5e-101 373.2 513 46.6
TAR636G0392 Trochodendron aralioides HOM05D001914 ORTHO05D006766 7.7e-101 372.1 595 43.5
RcHm_v2.0_Chr5g0030521 Rosa chinensis HOM05D002452 ORTHO05D006766 6.5e-100 369.0 535 48.0
FAN11G1668 Fragaria x ananassa HOM05D003130 ORTHO05D003547 8.5e-100 368.6 569 46.6
Aqoxy1G01990 Aquilegia oxysepala HOM05D002452 ORTHO05D006766 1.5e-99 367.9 538 46.3
Oeu025328.2 Olea europaea HOM05D002452 ORTHO05D006766 4.2e-99 366.3 532 47.2
PSO675G8136 Papaver somniferum HOM05D002452 ORTHO05D006766 7.2e-99 365.5 532 45.3
CARHR072180 Cardamine hirsuta HOM05D002452 ORTHO05D006766 4.7e-98 362.8 514 44.4
AUR62037577 Chenopodium quinoa HOM05D002452 ORTHO05D006766 8.0e-98 362.1 582 44.7
BraA07t31897Z Brassica rapa HOM05D002452 ORTHO05D006766 3.7e-95 353.2 513 44.6
A07p43910 Brassica napus HOM05D002452 ORTHO05D006766 1.1e-94 351.7 513 44.6
AL2G39060 Arabidopsis lyrata HOM05D002452 ORTHO05D006766 2.4e-94 350.5 520 43.7
ECA236G2857 Erigeron canadensis HOM05D002452 ORTHO05D006766 4.5e-93 346.3 517 43.1
Lsat_1_v5_gn_7_102200 Lactuca sativa HOM05D002452 ORTHO05D006766 1.3e-92 344.7 515 44.7
BcaC08g47422 Brassica carinata HOM05D002452 ORTHO05D006766 2.5e-91 340.5 516 43.0
BcaC08g47423 Brassica carinata HOM05D002452 ORTHO05D006766 5.5e-91 339.3 514 43.8
Actinidia07509 Actinidia chinensis HOM05D002452 ORTHO05D006766 7.2e-91 339.0 339 53.7
Gohir.A01G051100 Gossypium hirsutum HOM05D002452 ORTHO05D006766 2.8e-90 337.0 439 47.8
AT1G78650 Arabidopsis thaliana HOM05D002452 ORTHO05D006766 4.0e-89 333.2 455 43.5
FAN16G1664 Fragaria x ananassa HOM05D002452 ORTHO05D006766 1.5e-88 331.3 465 47.7
Aa31LG4G2320 Aethionema arabicum HOM05D002452 ORTHO05D006766 1.8e-86 324.3 492 43.7
Carub.0002s2550 Capsella rubella HOM05D002452 ORTHO05D006766 1.8e-86 324.3 519 42.4
CDE04G3284 Ceratophyllum demersum HOM05D002452 ORTHO05D006766 7.0e-86 322.4 554 40.1
Zm00001eb120810 Zea mays HOM05D002452 ORTHO05D006766 5.9e-85 319.3 518 40.5
Zm00001eb338160 Zea mays HOM05D002452 ORTHO05D006766 1.7e-84 317.8 522 41.4
MD03G1244600 Malus domestica HOM05D002452 ORTHO05D006766 8.0e-82 308.9 311 54.3
Ah.04g164150 Amaranthus hybridus HOM05D003130 ORTHO05D003547 1.4e-81 308.1 553 42.5
FAN25G3870 Fragaria x ananassa HOM05D003130 ORTHO05D003547 2.3e-81 307.4 542 43.0
HPP92_024061 Vanilla planifolia HOM05D002452 ORTHO05D006766 5.7e-80 302.8 526 42.2
C06p52530 Brassica napus HOM05D002452 ORTHO05D006585 1.7e-76 291.2 474 41.8
BolC6t40272H Brassica oleracea HOM05D002452 ORTHO05D006585 1.7e-76 291.2 474 41.8
Eucgr.F01259 Eucalyptus grandis HOM05D002452 ORTHO05D006766 3.9e-76 290.0 482 43.6
Os01g0204000 Oryza sativa ssp. japonica HOM05D002452 ORTHO05D006766 5.6e-75 286.2 522 39.7
Cpa.g.sc77.52 Carica papaya HOM05D002452 ORTHO05D006766 2.9e-71 273.9 385 50.1
Eucgr.F01317 Eucalyptus grandis HOM05D002452 ORTHO05D006766 4.9e-71 273.1 299 51.2
ATR0012G041 Amborella trichopoda HOM05D002452 ORTHO05D006766 3.2e-70 270.4 537 39.1
Glyma.13G268300 Glycine max HOM05D002452 ORTHO05D006766 4.3e-67 260.0 286 50.3
SEGI_19501 Sequoiadendron giganteum HOM05D002452 ORTHO05D006766 2.1e-66 257.7 560 36.8
RcHm_v2.0_Chr5g0030351 Rosa chinensis HOM05D002452 ORTHO05D006766 2.5e-59 234.2 451 43.5
RcHm_v2.0_Chr5g0030181 Rosa chinensis HOM05D002452 ORTHO05D006766 4.0e-57 226.9 452 43.1
PSO541G6050 Papaver somniferum HOM05D002452 ORTHO05D006766 1.3e-52 211.8 326 42.0
Hund10543 Selenicereus undatus HOM05D002452 ORTHO05D006766 2.3e-52 211.1 388 41.5
Pp3c27_7450 Physcomitrium patens HOM05D002452 ORTHO05D006766 1.6e-50 204.9 476 36.3
SMO172G0197 Selaginella moellendorffii HOM05D000586 ORTHO05D003356 2.8e-42 177.6 508 31.7
AagrBONN_evm.TU.Sc2ySwM_368.2647 Anthoceros agrestis HOM05D002452 ORTHO05D006766 3.4e-40 170.6 565 32.7
Mapoly0011s0137 Marchantia polymorpha HOM05D002452 ORTHO05D006766 9.9e-40 169.1 575 31.7
Zm00001eb317290 Zea mays HOM05D002452 ORTHO05D006766 2.4e-38 164.5 250 40.8
Eucgr.F01264 Eucalyptus grandis HOM05D002452 ORTHO05D006766 6.4e-31 139.8 428 31.5
CBR_g36415 Chara braunii HOM05D002452 ORTHO05D006766 1.8e-28 131.7 173 38.7
SpUn0074_0010 Schrenkiella parvula HOM05D002452 ORTHO05D006766 3.7e-26 124.0 250 40.4
Zm00001eb370750 Zea mays HOM05D002452 ORTHO05D006766 5.8e-24 116.7 218 37.2
Cre03.g202250 Chlamydomonas reinhardtii HOM05D002452 ORTHO05D006766 6.3e-18 96.7 161 32.3
Zm00001eb137460 Zea mays HOM05D002452 ORTHO05D006766 2.4e-17 94.7 233 33.0
Zm00001eb309500 Zea mays HOM05D002452 ORTHO05D006766 7.6e-16 89.7 69 60.9
MD03G1244500 Malus domestica HOM05D002452 ORTHO05D006766 1.3e-15 89.0 174 44.8
RcHm_v2.0_Chr5g0030251 Rosa chinensis HOM05D002452 ORTHO05D006766 1.3e-15 89.0 149 49.0
Zm00001eb409150 Zea mays HOM05D002452 ORTHO05D006766 2.2e-15 88.2 194 32.5
Zm00001eb002150 Zea mays HOM05D002452 ORTHO05D006766 2.5e-14 84.7 203 33.5
Gohir.A01G051000 Gossypium hirsutum HOM05D002452 ORTHO05D006766 3.6e-13 80.9 100 52.0
Zm00001eb024250 Zea mays HOM05D002452 ORTHO05D006766 1.1e-11 75.9 137 33.6
Zm00001eb017750 Zea mays HOM05D002452 ORTHO05D006766 9.7e-11 72.8 100 46.0
Zm00001eb038850 Zea mays HOM05D002452 ORTHO05D006766 9.7e-11 72.8 100 46.0
Zm00001eb100520 Zea mays HOM05D002452 ORTHO05D006766 9.7e-11 72.8 100 46.0
Zm00001eb188790 Zea mays HOM05D002452 ORTHO05D006766 9.7e-11 72.8 100 46.0
Zm00001eb319080 Zea mays HOM05D002452 ORTHO05D006766 9.7e-11 72.8 100 46.0
Zm00001eb343810 Zea mays HOM05D002452 ORTHO05D006766 9.7e-11 72.8 100 46.0
MCO14G309 Micromonas commoda HOM05D002452 ORTHO05D006766 3.7e-10 70.9 254 25.6
unitig_746.g26692 Utricularia gibba HOM05D002418 ORTHO05D002572 8.2e-10 69.7 241 34.0
Zm00001eb309510 Zea mays HOM05D002452 ORTHO05D006766 1.2e-08 65.9 94 42.6
Haze_09303 Corylus avellana HOM05D000808 ORTHO05D000863 1.0e-07 62.8 48 64.6


User provided reference genes

Program Settings