Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0025982 Sechium edule HOM05D004810 ORTHO05D006272 0.0e+00 2786.1 1374 100.0
CsaV3_3G031590 Cucumis sativus L. HOM05D004810 ORTHO05D006272 0.0e+00 2194.5 1381 79.4
ClCG10G011790 Citrullus lanatus HOM05D004810 ORTHO05D006272 0.0e+00 2153.3 1332 81.2
MELO3C012913.2 Cucumis melo HOM05D004810 ORTHO05D006272 0.0e+00 2128.6 1381 77.8
QL12p034348 Quercus lobata HOM05D004810 ORTHO05D006272 0.0e+00 1583.5 1457 57.3
Cfa004881 Carpinus fangiana HOM05D004810 ORTHO05D006272 0.0e+00 1545.0 1414 56.9
Thecc.01G322600 Theobroma cacao HOM05D004810 ORTHO05D006272 0.0e+00 1537.3 1398 57.4
Potri.002G189400 Populus trichocarpa HOM05D004810 ORTHO05D006272 0.0e+00 1522.7 1405 57.2
GSVIVG01028203001 Vitis vinifera HOM05D004810 ORTHO05D006272 0.0e+00 1520.0 1392 56.8
Haze_05120 Corylus avellana HOM05D004810 ORTHO05D006272 0.0e+00 1513.8 1466 54.4
Duzib138G1217 Durio zibethinus HOM05D004810 ORTHO05D006272 0.0e+00 1506.1 1398 56.7
Ciclev10018506m.g Citrus clementina HOM05D004810 ORTHO05D006272 0.0e+00 1499.6 1409 54.6
CiPaw.07G123600 Carya illinoinensis HOM05D004810 ORTHO05D006272 0.0e+00 1488.4 1422 55.8
Gorai.008G136000 Gossypium raimondii HOM05D004810 ORTHO05D006272 0.0e+00 1486.5 1401 56.0
Sabra02G0166300 Salix brachista HOM05D004810 ORTHO05D006272 0.0e+00 1479.9 1490 53.7
MD09G1293000 Malus domestica HOM05D004810 ORTHO05D006272 0.0e+00 1473.0 1410 55.4
RcHm_v2.0_Chr3g0486381 Rosa chinensis HOM05D004810 ORTHO05D006272 0.0e+00 1472.6 1403 55.7
TWI14G1319 Tripterygium wilfordii HOM05D004810 ORTHO05D006272 0.0e+00 1463.0 1402 54.6
TAR362G0253 Trochodendron aralioides HOM05D004810 ORTHO05D006272 0.0e+00 1449.9 1407 54.9
Manes.05G010600 Manihot esculenta HOM05D004810 ORTHO05D006272 0.0e+00 1444.9 1363 56.1
FAN23G0904 Fragaria x ananassa HOM05D004810 ORTHO05D006272 0.0e+00 1442.2 1395 55.0
Prupe.3G004200 Prunus persica HOM05D004810 ORTHO05D006272 0.0e+00 1441.8 1398 54.9
Medtr7g110260 Medicago truncatula HOM05D004810 ORTHO05D006272 0.0e+00 1439.5 1393 55.5
FAN26G0889 Fragaria x ananassa HOM05D004810 ORTHO05D006272 0.0e+00 1430.6 1396 54.7
Rhsim13G0000700 Rhododendron simsii HOM05D004810 ORTHO05D006272 0.0e+00 1428.7 1414 53.3
FvH4_1g26470 Fragaria vesca HOM05D004810 ORTHO05D006272 0.0e+00 1427.9 1401 54.7
Lalb_Chr04g0260131 Lupinus albus HOM05D004810 ORTHO05D006272 0.0e+00 1426.8 1389 54.1
PGR142G2149 Punica granatum HOM05D004810 ORTHO05D006272 0.0e+00 1425.6 1383 54.1
COL.COLO4_23155 Corchorus olitorius HOM05D004810 ORTHO05D006272 0.0e+00 1424.8 1389 54.9
FAN19G2038 Fragaria x ananassa HOM05D004810 ORTHO05D006272 0.0e+00 1421.4 1397 54.6
Eucgr.K00589 Eucalyptus grandis HOM05D004810 ORTHO05D006272 0.0e+00 1408.7 1409 52.8
Ca_09236_v3 Cicer arietinum L. HOM05D004810 ORTHO05D006272 0.0e+00 1402.1 1416 53.9
Lj1g0015466 Lotus japonicus HOM05D004810 ORTHO05D006272 0.0e+00 1399.4 1400 53.9
Actinidia21354 Actinidia chinensis HOM05D004810 ORTHO05D006272 0.0e+00 1398.6 1403 53.4
TPR.G4131 Trifolium pratense HOM05D004810 ORTHO05D006272 0.0e+00 1396.3 1385 53.6
Carub.0006s3538 Capsella rubella HOM05D004810 ORTHO05D006272 0.0e+00 1391.3 1382 52.5
Phvul.001G216500 Phaseolus vulgaris HOM05D004810 ORTHO05D006272 0.0e+00 1385.9 1401 52.9
arahy.Tifrunner.gnm1.ann1.NAX4N2 Arachis hypogaea HOM05D004810 ORTHO05D006272 0.0e+00 1385.5 1397 52.8
Nn3g21885 Nelumbo nucifera HOM05D004810 ORTHO05D006272 0.0e+00 1382.5 1408 52.7
Glyma.19G220100 Glycine max HOM05D004810 ORTHO05D006272 0.0e+00 1381.7 1393 53.3
AL6G51450 Arabidopsis lyrata HOM05D004810 ORTHO05D006272 0.0e+00 1379.0 1381 52.4
DCAR_018250 Daucus carota HOM05D004810 ORTHO05D006272 0.0e+00 1375.1 1453 50.9
Sp6g01700 Schrenkiella parvula HOM05D004810 ORTHO05D006272 0.0e+00 1371.7 1384 52.5
arahy.Tifrunner.gnm1.ann1.RS5E8T Arachis hypogaea HOM05D004810 ORTHO05D006272 0.0e+00 1370.5 1395 52.2
AT4G01860 Arabidopsis thaliana HOM05D004810 ORTHO05D006272 0.0e+00 1370.1 1382 52.1
Aa31LG5G1530 Aethionema arabicum HOM05D004810 ORTHO05D006272 0.0e+00 1369.0 1394 52.2
BcaB01g02106 Brassica carinata HOM05D004810 ORTHO05D006272 0.0e+00 1367.8 1380 52.4
A09p01330 Brassica napus HOM05D004810 ORTHO05D006272 0.0e+00 1358.6 1379 52.3
Aqoxy5G02779 Aquilegia oxysepala HOM05D004810 ORTHO05D006272 0.0e+00 1356.3 1413 51.3
BraA09t35800Z Brassica rapa HOM05D004810 ORTHO05D006272 0.0e+00 1356.3 1378 52.3
THA.LOC104825930 Tarenaya hassleriana HOM05D004810 ORTHO05D006272 0.0e+00 1356.3 1385 52.0
BcaC04g24069 Brassica carinata HOM05D004810 ORTHO05D006272 0.0e+00 1355.1 1377 52.4
C09p01390 Brassica napus HOM05D004810 ORTHO05D006272 0.0e+00 1354.0 1381 52.0
Thhalv10027621m.g Eutrema salsugineum HOM05D004810 ORTHO05D006272 0.0e+00 1346.6 1393 50.9
BolC9t53072H Brassica oleracea HOM05D004810 ORTHO05D006272 0.0e+00 1343.2 1381 52.4
Sopen01g030000 Solanum pennellii HOM05D004810 ORTHO05D006272 0.0e+00 1340.1 1403 50.0
PSO170G6261 Papaver somniferum HOM05D004810 ORTHO05D006272 0.0e+00 1336.6 1420 50.8
MSTRG.21726 Avicennia marina HOM05D004810 ORTHO05D006272 0.0e+00 1329.3 1423 50.8
AUR62011731 Chenopodium quinoa HOM05D004810 ORTHO05D006272 0.0e+00 1328.9 1400 49.9
Atru.chr5.899 Acer truncatum HOM05D004810 ORTHO05D006272 0.0e+00 1326.6 1177 57.6
PSO357G0647 Papaver somniferum HOM05D004810 ORTHO05D006272 0.0e+00 1325.5 1423 50.5
EL10As5g23578 Beta vulgaris HOM05D004810 ORTHO05D006272 0.0e+00 1318.9 1425 49.8
VMungo1383G1823 Vigna mungo HOM05D004810 ORTHO05D006272 0.0e+00 1293.9 1362 52.0
FAN28G1956 Fragaria x ananassa HOM05D004810 ORTHO05D006272 0.0e+00 1283.9 1473 48.9
Cc01_g21880 Coffea canephora HOM05D004810 ORTHO05D006272 0.0e+00 1280.8 1481 48.5
HanXRQChr06g0167991 Helianthus annuus HOM05D004810 ORTHO05D006272 0.0e+00 1270.4 1368 49.7
Lsat_1_v5_gn_8_167321 Lactuca sativa HOM05D004810 ORTHO05D006272 0.0e+00 1270.0 1378 49.9
SGA_v2.0_scaffold80G25689 Striga asiatica HOM05D004810 ORTHO05D006272 0.0e+00 1259.6 1405 49.6
Psat3g018400 Pisum sativum HOM05D004810 ORTHO05D006272 0.0e+00 1258.0 1390 49.4
Hma1.2p1_0484F.1_g162890 Hydrangea macrophylla HOM05D004810 ORTHO05D006272 0.0e+00 1257.3 1158 56.9
ECA236G0789 Erigeron canadensis HOM05D004810 ORTHO05D006272 0.0e+00 1254.6 1348 51.0
MBI18_g09625_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D006272 0.0e+00 1253.4 1419 49.2
Gohir.A12G121200 Gossypium hirsutum HOM05D004810 ORTHO05D006272 0.0e+00 1250.0 1181 56.2
Nitab4.5_0000222g0280 Nicotiana tabacum HOM05D004810 ORTHO05D006272 0.0e+00 1241.9 1397 47.7
Lj2C1214G2 Lonicera japonica HOM05D004810 ORTHO05D006272 0.0e+00 1233.8 1388 50.2
Hund09692 Selenicereus undatus HOM05D004810 ORTHO05D006272 0.0e+00 1218.4 1391 48.4
ATR0796G051 Amborella trichopoda HOM05D004810 ORTHO05D006272 0.0e+00 1192.9 1422 45.9
CDE05G2014 Ceratophyllum demersum HOM05D004810 ORTHO05D006272 0.0e+00 1187.9 1403 47.4
HPP92_017301 Vanilla planifolia HOM05D004810 ORTHO05D006272 0.0e+00 1135.2 1422 46.2
Os03g0111800 Oryza sativa ssp. japonica HOM05D004810 ORTHO05D006272 0.0e+00 1133.6 1386 46.2
CSS0019531 Camellia sinensis var. sinensis HOM05D004810 ORTHO05D006272 0.0e+00 1102.8 1063 54.8
CSS0014565 Camellia sinensis var. sinensis HOM05D004810 ORTHO05D006272 0.0e+00 1099.0 1061 54.9
Sc18g0007580 Simmondsia chinensis HOM05D004810 ORTHO05D006272 0.0e+00 1090.9 1076 52.9
CARHR249820 Cardamine hirsuta HOM05D004810 ORTHO05D006272 0.0e+00 1090.5 1039 54.3
Hma1.2p1_0484F.1_g162880 Hydrangea macrophylla HOM05D004810 ORTHO05D006272 0.0e+00 1080.5 979 56.3
Dinv12098 Davidia involucrata HOM05D004810 ORTHO05D006272 2.8e-311 1072.4 979 56.7
Gohir.D12G125000 Gossypium hirsutum HOM05D004810 ORTHO05D006272 5.5e-286 988.4 958 55.3
Nitab4.5_0002994g0090 Nicotiana tabacum HOM05D004810 ORTHO05D006272 1.2e-245 854.4 1396 37.5
vmacro02367 Vaccinium macrocarpon HOM05D004810 ORTHO05D006272 3.8e-239 832.8 886 50.0
Pp3c3_23690 Physcomitrium patens HOM05D004810 ORTHO05D006272 4.0e-228 796.2 1497 36.7
Mapoly0020s0127 Marchantia polymorpha HOM05D004810 ORTHO05D006272 1.6e-221 774.2 1507 34.2
Migut.D00026 Erythranthe guttata HOM05D004810 ORTHO05D006272 2.7e-216 756.9 735 53.7
AagrBONN_evm.TU.Sc2ySwM_344.1995 Anthoceros agrestis HOM05D004810 ORTHO05D006272 5.6e-206 722.6 1498 34.3
AUR62024565 Chenopodium quinoa HOM05D004810 ORTHO05D006272 1.9e-201 707.6 856 45.8
unitig_62.g23902 Utricularia gibba HOM05D004810 ORTHO05D006272 3.5e-200 703.4 1346 34.6
Cpa.g.sc67.77 Carica papaya HOM05D004810 ORTHO05D006272 3.6e-197 693.3 604 58.9
Oeu044753.1 Olea europaea HOM05D004810 ORTHO05D006272 5.1e-191 672.9 775 48.5
CANSAT21G0194 Cannabis sativa HOM05D004810 ORTHO05D006272 5.5e-185 652.9 582 59.1
Oeu044752.1 Olea europaea HOM05D004810 ORTHO05D006272 2.9e-178 630.6 598 54.7
Zm00001eb404090 Zea mays HOM05D004810 ORTHO05D006272 6.1e-168 596.3 794 43.3
SEGI_19859 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 3.4e-163 580.5 794 42.1
vmacro02368 Vaccinium macrocarpon HOM05D004810 ORTHO05D006272 2.8e-157 560.8 588 51.4
SMO137G0268 Selaginella moellendorffii HOM05D004810 ORTHO05D006272 5.3e-156 556.6 1343 31.7
Migut.D00025 Erythranthe guttata HOM05D004810 ORTHO05D006272 1.6e-152 545.0 669 46.3
SEGI_21204 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 3.1e-148 530.8 892 39.1
FAN10G1333 Fragaria x ananassa HOM05D004810 ORTHO05D006272 6.6e-130 469.9 595 45.7
Dinv12097 Davidia involucrata HOM05D004810 ORTHO05D006272 1.1e-111 409.5 392 57.9
SHI15448 Sapria himalayana HOM05D000105 ORTHO05D000023 5.4e-92 344.0 346 51.7
SHI15445 Sapria himalayana HOM05D004810 ORTHO05D006272 3.1e-87 328.2 413 47.7
MD17G1281400 Malus domestica HOM05D004810 ORTHO05D006272 2.6e-86 325.1 314 54.1
MCO01G012 Micromonas commoda HOM05D004810 ORTHO05D006272 5.6e-73 280.8 1611 24.1
SEGI_09896 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 4.9e-69 267.7 332 44.0
MD17G1281300 Malus domestica HOM05D004810 ORTHO05D006272 3.9e-66 258.1 350 44.6
MD17G1281700 Malus domestica HOM05D004810 ORTHO05D006272 1.6e-64 252.7 273 54.2
Cpa.g.sc3588.1 Carica papaya HOM05D004810 ORTHO05D006272 5.0e-61 241.1 256 52.0
RcHm_v2.0_Chr3g0486501 Rosa chinensis HOM05D004810 ORTHO05D006272 4.2e-60 238.0 246 54.1
Psat4g129960 Pisum sativum HOM05D004810 ORTHO05D006272 1.4e-55 223.0 203 54.2
SEGI_37781 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 1.9e-52 212.6 299 41.1
CBR_g26439 Chara braunii HOM05D000019 ORTHO05D000002 1.2e-51 209.9 717 27.3
SHI15450 Sapria himalayana HOM05D000105 ORTHO05D000023 1.2e-51 209.9 269 44.6
A02p42710 Brassica napus HOM05D004810 ORTHO05D006272 1.6e-51 209.5 208 53.4
PRCOL_00001957 Prasinoderma coloniale HOM05D004810 ORTHO05D006272 7.9e-51 207.2 1360 23.1
RcHm_v2.0_Chr3g0486491 Rosa chinensis HOM05D004810 ORTHO05D006272 5.1e-50 204.5 183 55.7
Atru.chr5.900 Acer truncatum HOM05D004810 ORTHO05D006272 5.9e-46 191.0 195 51.8
Solyc01g068070.4 Solanum lycopersicum HOM05D004810 ORTHO05D006272 6.5e-45 187.6 219 43.8
Gohir.A12G121250 Gossypium hirsutum HOM05D004810 ORTHO05D006272 3.7e-40 171.8 179 50.8
MD17G1281800 Malus domestica HOM05D004810 ORTHO05D006272 1.0e-34 153.7 107 63.6
SHI15443 Sapria himalayana HOM05D004810 ORTHO05D006272 9.7e-33 147.1 254 38.2
RcHm_v2.0_Chr3g0486511 Rosa chinensis HOM05D004810 ORTHO05D006272 8.2e-32 144.1 204 44.1
FAN24G0870 Fragaria x ananassa HOM05D004810 ORTHO05D006272 5.3e-31 141.4 152 50.0
SEGI_39451 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 5.3e-31 141.4 151 44.4
Actinidia06394 Actinidia chinensis HOM05D004810 ORTHO05D006272 7.2e-28 131.0 144 49.3
Psat0s2464g0040 Pisum sativum HOM05D004810 ORTHO05D006272 3.0e-26 125.6 104 54.8
RcHm_v2.0_Chr3g0486521 Rosa chinensis HOM05D004810 ORTHO05D006272 5.7e-25 121.3 89 59.6
CAN.G100.30 Capsicum annuum HOM05D004810 ORTHO05D006272 7.5e-25 120.9 69 72.5
Lsat_1_v5_gn_2_51680 Lactuca sativa HOM05D004810 ORTHO05D006272 1.1e-23 117.1 115 47.8
Psat0s3766g0080 Pisum sativum HOM05D002292 ORTHO05D006272 1.4e-23 116.7 76 64.5
FvH4_2g08080 Fragaria vesca HOM05D004810 ORTHO05D006272 3.1e-23 115.5 119 51.3
Zm00001eb241980 Zea mays HOM05D004810 ORTHO05D006272 1.8e-15 89.7 88 47.7
C02p62710 Brassica napus HOM05D004810 ORTHO05D006272 1.6e-14 86.7 79 57.0
MBI14_g40313_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 1.0e-13 84.0 64 67.2
MBI15_g23571_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 1.0e-13 84.0 64 67.2
MBI13_g10212_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 1.5e-12 80.1 64 65.6
FvH4_6g28340 Fragaria vesca HOM05D003050 ORTHO05D006272 1.2e-11 77.0 97 43.3
MBI14_g17170_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 2.1e-11 76.3 54 70.4
MBI19_g30553_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 3.6e-11 75.5 54 72.2
Hund09691 Selenicereus undatus HOM05D004810 ORTHO05D006272 6.8e-10 71.2 75 48.0
CBR_g26440 Chara braunii HOM05D000019 ORTHO05D000048 8.9e-10 70.9 432 23.6
Actinidia06392 Actinidia chinensis HOM05D004810 ORTHO05D006272 3.4e-09 68.9 63 52.4
FAN14G3945 Fragaria x ananassa HOM05D004810 ORTHO05D029461 9.8e-09 67.4 51 64.7
Atru.chr13.711 Acer truncatum HOM05D002332 ORTHO05D002509 8.3e-08 64.3 203 25.6
FvH4_6g46150 Fragaria vesca HOM05D004810 ORTHO05D029461 1.1e-07 63.9 49 63.3
BcaC09g49926 Brassica carinata HOM05D002332 ORTHO05D002509 7.0e-07 61.2 209 24.4
C01p31140 Brassica napus HOM05D002332 ORTHO05D002509 7.0e-07 61.2 209 24.4
BolC1t03049H Brassica oleracea HOM05D002332 ORTHO05D002509 7.0e-07 61.2 209 24.4
FvH4_3g18411 Fragaria vesca HOM05D004810 ORTHO05D029461 7.0e-07 61.2 43 69.8
AL5G28900 Arabidopsis lyrata HOM05D002332 ORTHO05D002509 3.5e-06 58.9 213 26.3
A01p24930 Brassica napus HOM05D002332 ORTHO05D002509 3.5e-06 58.9 209 23.9
CBR_g18966 Chara braunii HOM05D014933 ORTHO05D016523 3.5e-06 58.9 159 28.9
Carub.0005s1541 Capsella rubella HOM05D002332 ORTHO05D002509 4.6e-06 58.5 210 26.7
SMO232G0112 Selaginella moellendorffii HOM05D005961 ORTHO05D007391 4.6e-06 58.5 121 29.8
DCAR_013764 Daucus carota HOM05D005961 ORTHO05D007391 5.9e-06 58.2 133 26.3
BraA01t02404Z Brassica rapa HOM05D002332 ORTHO05D002509 7.8e-06 57.8 209 23.9
Sp5g12890 Schrenkiella parvula HOM05D002332 ORTHO05D002509 7.8e-06 57.8 178 26.4


User provided reference genes

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