Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0025977 Sechium edule HOM05D006899 ORTHO05D008566 1.4e-94 349.7 189 100.0
CsaV3_4G031920 Cucumis sativus L. HOM05D006899 ORTHO05D008566 7.5e-77 290.8 192 85.9
MELO3C026968.2 Cucumis melo HOM05D006899 ORTHO05D008566 1.2e-71 273.5 192 82.8
ClCG11G016470 Citrullus lanatus HOM05D006899 ORTHO05D008566 8.0e-63 244.2 195 74.9
QL08p044873 Quercus lobata HOM05D006899 ORTHO05D008566 8.9e-54 214.2 189 66.7
Rhsim04G0081600 Rhododendron simsii HOM05D006899 ORTHO05D008566 5.4e-51 204.9 190 67.4
Peaxi162Scf00111g00221 Petunia axillaris HOM05D006899 ORTHO05D008566 6.0e-50 201.4 149 77.2
Cfa023072 Carpinus fangiana HOM05D006899 ORTHO05D008566 2.3e-49 199.5 190 63.2
LjContig00049g0021241 Lotus japonicus HOM05D006899 ORTHO05D008566 3.0e-49 199.1 190 62.1
Oeu013822.1 Olea europaea HOM05D006899 ORTHO05D008566 8.6e-49 197.6 192 63.5
Gohir.A07G080700 Gossypium hirsutum HOM05D006899 ORTHO05D008566 3.3e-48 195.7 183 65.0
Nitab4.5_0002251g0050 Nicotiana tabacum HOM05D006899 ORTHO05D008566 4.3e-48 195.3 161 72.0
Sopen07g029600 Solanum pennellii HOM05D006899 ORTHO05D008566 7.3e-48 194.5 170 70.6
CANSAT64G2357 Cannabis sativa HOM05D006899 ORTHO05D008566 9.5e-48 194.1 181 66.3
Oeu020934.1 Olea europaea HOM05D006899 ORTHO05D008566 9.5e-48 194.1 192 63.0
Nitab4.5_0001883g0020 Nicotiana tabacum HOM05D006899 ORTHO05D008566 1.6e-47 193.4 166 70.5
Gohir.D07G086300 Gossypium hirsutum HOM05D006899 ORTHO05D008566 2.1e-47 193.0 193 62.2
vmacro09192 Vaccinium macrocarpon HOM05D006899 ORTHO05D008566 3.6e-47 192.2 190 63.7
Atru.chr6.2058 Acer truncatum HOM05D006899 ORTHO05D008566 8.1e-47 191.0 190 62.6
Aa31LG1G24750 Aethionema arabicum HOM05D006899 ORTHO05D008566 1.1e-46 190.7 189 62.4
PGSC0003DMG400017304 Solanum tuberosum HOM05D006899 ORTHO05D008566 1.1e-46 190.7 150 75.3
CiPaw.04G138700 Carya illinoinensis HOM05D006899 ORTHO05D008566 1.8e-46 189.9 193 62.2
Gorai.001G092300 Gossypium raimondii HOM05D006899 ORTHO05D008566 3.1e-46 189.1 192 62.0
Solyc07g056240.3 Solanum lycopersicum HOM05D006899 ORTHO05D008566 3.1e-46 189.1 170 68.2
GSVIVG01020847001 Vitis vinifera HOM05D006899 ORTHO05D008566 3.1e-46 189.1 193 64.2
Glyma.02G285100 Glycine max HOM05D006899 ORTHO05D008566 5.2e-46 188.3 187 63.1
PGR042G1005 Punica granatum HOM05D006899 ORTHO05D008566 5.2e-46 188.3 191 63.4
Cpa.g.sc50.104 Carica papaya HOM05D006899 ORTHO05D008566 6.8e-46 188.0 122 83.6
Phvul.008G193700 Phaseolus vulgaris HOM05D006899 ORTHO05D008566 6.8e-46 188.0 177 64.4
COL.COLO4_08896 Corchorus olitorius HOM05D006899 ORTHO05D008566 1.5e-45 186.8 194 64.4
Potri.002G058000 Populus trichocarpa HOM05D006899 ORTHO05D008566 1.5e-45 186.8 191 63.4
VMungo0647G1903 Vigna mungo HOM05D006899 ORTHO05D008566 1.5e-45 186.8 173 65.9
Thecc.01G170200 Theobroma cacao HOM05D006899 ORTHO05D008566 3.4e-45 185.7 170 67.6
TPR.G12679 Trifolium pratense HOM05D006899 ORTHO05D008566 3.4e-45 185.7 180 61.1
Manes.10G088300 Manihot esculenta HOM05D006899 ORTHO05D008566 4.4e-45 185.3 170 66.5
Medtr5g091190 Medicago truncatula HOM05D006899 ORTHO05D008566 7.6e-45 184.5 179 62.6
MSTRG.12841 Avicennia marina HOM05D006899 ORTHO05D008566 9.9e-45 184.1 143 72.7
Prupe.3G176400 Prunus persica HOM05D006899 ORTHO05D008566 2.9e-44 182.6 193 61.7
Haze_13530 Corylus avellana HOM05D006899 ORTHO05D008566 3.8e-44 182.2 227 52.4
Glyma.14G029700 Glycine max HOM05D006899 ORTHO05D008566 6.4e-44 181.4 186 61.8
Actinidia03641 Actinidia chinensis HOM05D006899 ORTHO05D008566 8.4e-44 181.0 125 80.8
Nn4g26539 Nelumbo nucifera HOM05D006899 ORTHO05D008566 8.4e-44 181.0 156 69.9
Cc05_g09700 Coffea canephora HOM05D006899 ORTHO05D008566 2.4e-43 179.5 148 68.9
RcHm_v2.0_Chr2g0151981 Rosa chinensis HOM05D006899 ORTHO05D008566 2.4e-43 179.5 192 60.4
Potri.005G204200 Populus trichocarpa HOM05D006899 ORTHO05D008566 3.2e-43 179.1 177 64.4
TAR627G0648 Trochodendron aralioides HOM05D006899 ORTHO05D008566 3.2e-43 179.1 196 58.7
Ciclev10032884m.g Citrus clementina HOM05D006899 ORTHO05D008566 4.2e-43 178.7 194 59.8
Sabra02G0047300 Salix brachista HOM05D006899 ORTHO05D008566 9.2e-43 177.6 191 61.3
MD09G1149700 Malus domestica HOM05D006899 ORTHO05D008566 2.1e-42 176.4 190 57.9
arahy.Tifrunner.gnm1.ann1.226PX6 Arachis hypogaea HOM05D006899 ORTHO05D008566 2.7e-42 176.0 178 61.2
arahy.Tifrunner.gnm1.ann1.SNQ1P9 Arachis hypogaea HOM05D006899 ORTHO05D008566 3.5e-42 175.6 179 60.9
Sp4g25100 Schrenkiella parvula HOM05D006899 ORTHO05D008566 7.8e-42 174.5 125 78.4
Hund24233 Selenicereus undatus HOM05D006899 ORTHO05D008566 1.7e-41 173.3 160 65.0
TWI59G0652 Tripterygium wilfordii HOM05D006899 ORTHO05D008566 2.3e-41 172.9 167 64.1
AL4G41610 Arabidopsis lyrata HOM05D006899 ORTHO05D008566 3.0e-41 172.6 119 81.5
THA.LOC104803370 Tarenaya hassleriana HOM05D006899 ORTHO05D008566 3.0e-41 172.6 141 70.2
AUR62015134 Chenopodium quinoa HOM05D006899 ORTHO05D008566 3.9e-41 172.2 148 68.9
Sc13g0007020 Simmondsia chinensis HOM05D006899 ORTHO05D008566 3.9e-41 172.2 168 61.9
SGA_v2.0_scaffold4G02123 Striga asiatica HOM05D006899 ORTHO05D008566 3.9e-41 172.2 177 61.0
MD17G1136600 Malus domestica HOM05D006899 ORTHO05D008566 6.6e-41 171.4 166 61.4
SalBow7G1887 Salvia bowleyana HOM05D006899 ORTHO05D008566 6.6e-41 171.4 193 58.5
BraA04t18701Z Brassica rapa HOM05D006899 ORTHO05D008566 8.7e-41 171.0 181 61.3
AT2G42975 Arabidopsis thaliana HOM05D006899 ORTHO05D008566 1.1e-40 170.6 193 60.1
FAN09G4704 Fragaria x ananassa HOM05D006899 ORTHO05D008566 1.1e-40 170.6 189 58.7
BNapus_Darmor_BZH_scaffold_64p00160 Brassica napus HOM05D006899 ORTHO05D008566 1.5e-40 170.2 120 78.3
FvH4_6g38570 Fragaria vesca HOM05D006899 ORTHO05D008566 1.5e-40 170.2 189 58.7
Eucgr.A02015 Eucalyptus grandis HOM05D006899 ORTHO05D008566 1.9e-40 169.9 159 67.3
BcaC02g07213 Brassica carinata HOM05D006899 ORTHO05D008566 2.5e-40 169.5 192 57.8
C04p70000 Brassica napus HOM05D006899 ORTHO05D008566 2.5e-40 169.5 192 57.8
BolC4t28500H Brassica oleracea HOM05D006899 ORTHO05D008566 2.5e-40 169.5 192 57.8
BcaB06g29274 Brassica carinata HOM05D006899 ORTHO05D008566 4.3e-40 168.7 123 76.4
FAN05G4631 Fragaria x ananassa HOM05D006899 ORTHO05D008566 5.6e-40 168.3 174 60.3
Duzib138G0065 Durio zibethinus HOM05D006899 ORTHO05D008566 7.3e-40 167.9 172 61.6
Carub.0004s2544 Capsella rubella HOM05D006899 ORTHO05D008566 2.1e-39 166.4 121 76.9
Thhalv10017256m.g Eutrema salsugineum HOM05D006899 ORTHO05D008566 2.8e-39 166.0 121 76.0
CARHR138030 Cardamine hirsuta HOM05D006899 ORTHO05D008566 3.6e-39 165.6 192 58.9
EL10Ac9g22843 Beta vulgaris HOM05D006899 ORTHO05D008566 4.7e-39 165.2 147 68.0
FAN02G3475 Fragaria x ananassa HOM05D006899 ORTHO05D008566 4.7e-39 165.2 122 72.1
FAN14G2046 Fragaria x ananassa HOM05D006899 ORTHO05D008566 4.7e-39 165.2 122 72.1
AUR62017595 Chenopodium quinoa HOM05D006899 ORTHO05D008566 8.1e-39 164.5 201 55.7
Migut.E01772 Erythranthe guttata HOM05D006899 ORTHO05D008566 3.1e-38 162.5 141 68.1
THA.LOC104802283 Tarenaya hassleriana HOM05D006899 ORTHO05D008566 3.1e-38 162.5 125 73.6
Lalb_Chr04g0248871 Lupinus albus HOM05D006899 ORTHO05D008566 1.5e-37 160.2 98 85.7
Dinv09142 Davidia involucrata HOM05D006899 ORTHO05D008566 2.2e-36 156.4 144 66.0
CSS0032532 Camellia sinensis var. sinensis HOM05D006899 ORTHO05D008566 1.1e-35 154.1 151 62.3
Aqoxy1G02918 Aquilegia oxysepala HOM05D006899 ORTHO05D008566 3.2e-35 152.5 127 66.1
Lj1P601T16 Lonicera japonica HOM05D006899 ORTHO05D008566 1.6e-34 150.2 87 86.2
MBI10_g21113_MAGBIO Magnolia biondii HOM05D006899 ORTHO05D008566 3.0e-33 146.0 122 68.0
Ah.01g013620 Amaranthus hybridus HOM05D006899 ORTHO05D008566 3.9e-33 145.6 100 77.0
Duzib133G1045 Durio zibethinus HOM05D006899 ORTHO05D008566 5.1e-33 145.2 192 51.0
ECA233G0523 Erigeron canadensis HOM05D006899 ORTHO05D008566 6.6e-33 144.8 123 65.9
HanXRQChr17g0554721 Helianthus annuus HOM05D006899 ORTHO05D008566 2.5e-32 142.9 140 59.3
Lsat_1_v5_gn_8_137860 Lactuca sativa HOM05D006899 ORTHO05D008566 2.1e-31 139.8 139 56.1
CSS0025344 Camellia sinensis var. sinensis HOM05D006899 ORTHO05D008566 9.0e-30 134.4 148 56.1
PSO478G1301 Papaver somniferum HOM05D006899 ORTHO05D008566 1.2e-29 134.0 175 56.0
PSO675G8667 Papaver somniferum HOM05D006899 ORTHO05D008566 1.2e-29 134.0 175 56.0
HPP92_010055 Vanilla planifolia HOM05D006899 ORTHO05D008566 5.8e-29 131.7 131 57.3
CDE05G0801 Ceratophyllum demersum HOM05D006899 ORTHO05D008566 6.4e-28 128.3 164 52.4
Zm00001eb157430 Zea mays HOM05D006899 ORTHO05D008566 4.2e-27 125.6 140 52.9
PSO541G6147 Papaver somniferum HOM05D006899 ORTHO05D008566 7.9e-26 121.3 123 61.0
Os01g0666600 Oryza sativa ssp. japonica HOM05D006899 ORTHO05D008566 1.0e-25 120.9 150 52.0
unitig_60.g25592 Utricularia gibba HOM05D006899 ORTHO05D008566 5.1e-25 118.6 130 53.1
Nitab4.5_0004243g0030 Nicotiana tabacum HOM05D006899 ORTHO05D008566 7.4e-24 114.8 83 75.9
ATR0585G139 Amborella trichopoda HOM05D006899 ORTHO05D008566 9.6e-24 114.4 124 55.6
Hund24244 Selenicereus undatus HOM05D006899 ORTHO05D008566 2.1e-23 113.2 97 68.0
Nitab4.5_0004950g0010 Nicotiana tabacum HOM05D006899 ORTHO05D008566 1.2e-21 107.5 81 75.3
Nitab4.5_0009604g0020 Nicotiana tabacum HOM05D006899 ORTHO05D008566 1.2e-21 107.5 81 75.3
Pp3c13_6560 Physcomitrium patens HOM05D006899 ORTHO05D008566 2.0e-21 106.7 158 41.1
Mapoly0120s0054 Marchantia polymorpha HOM05D006899 ORTHO05D008566 1.9e-16 90.1 170 40.0
Nitab4.5_0002251g0080 Nicotiana tabacum HOM05D006899 ORTHO05D008566 2.5e-16 89.7 110 50.9
Medtr5g016040 Medicago truncatula HOM05D006899 ORTHO05D008566 3.3e-16 89.4 80 61.2
TWI23G0441 Tripterygium wilfordii HOM05D006899 ORTHO05D008566 1.3e-15 87.4 99 61.6
AagrBONN_evm.TU.Sc2ySwM_368.298 Anthoceros agrestis HOM05D006899 ORTHO05D008566 2.1e-15 86.7 121 42.1
SMO353G0201 Selaginella moellendorffii HOM05D006899 ORTHO05D008566 1.4e-11 73.9 90 47.8
Medtr7g035145 Medicago truncatula HOM05D006899 ORTHO05D008566 7.4e-08 61.6 69 39.1


User provided reference genes

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