Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0025917 Sechium edule HOM05D006153 ORTHO05D007701 1.3e-63 246.1 114 100.0
ClCG02G006680 Citrullus lanatus HOM05D006153 ORTHO05D007701 6.6e-36 154.1 116 64.7
CsaV3_7G007950 Cucumis sativus L. HOM05D006153 ORTHO05D007701 8.9e-33 143.7 101 67.3
MELO3C018509.2 Cucumis melo HOM05D006153 ORTHO05D007701 2.2e-31 139.0 101 66.3
Duzib132G0541 Durio zibethinus HOM05D006153 ORTHO05D007701 9.0e-17 90.5 96 42.7
Potri.001G296900 Populus trichocarpa HOM05D006153 ORTHO05D007701 2.0e-16 89.4 90 50.0
Cpa.g.sc200.7 Carica papaya HOM05D006153 ORTHO05D007701 3.4e-16 88.6 93 46.2
Duzib052G0610 Durio zibethinus HOM05D006153 ORTHO05D007701 1.3e-15 86.7 93 44.1
Manes.07G064400 Manihot esculenta HOM05D006153 ORTHO05D007701 2.9e-15 85.5 108 41.7
Lalb_Chr06g0165291 Lupinus albus HOM05D006153 ORTHO05D007701 3.8e-15 85.1 51 74.5
Gohir.D13G044400 Gossypium hirsutum HOM05D006153 ORTHO05D007701 4.9e-15 84.7 80 46.2
Gorai.013G049200 Gossypium raimondii HOM05D006153 ORTHO05D007701 4.9e-15 84.7 80 46.2
Dinv42217 Davidia involucrata HOM05D006153 ORTHO05D007701 1.4e-14 83.2 94 43.6
Sabra16G0186000 Salix brachista HOM05D006153 ORTHO05D007701 1.4e-14 83.2 74 52.7
arahy.Tifrunner.gnm1.ann1.EHR7LK Arachis hypogaea HOM05D006153 ORTHO05D007701 1.9e-14 82.8 55 65.5
Haze_10254 Corylus avellana HOM05D006153 ORTHO05D007701 2.4e-14 82.4 85 49.4
Phvul.007G043000 Phaseolus vulgaris HOM05D006153 ORTHO05D007701 4.2e-14 81.6 46 71.7
Cfa004694 Carpinus fangiana HOM05D006153 ORTHO05D007701 5.4e-14 81.3 96 39.6
Lj1g0020403 Lotus japonicus HOM05D006153 ORTHO05D007701 5.4e-14 81.3 78 42.3
Nitab4.5_0004685g0060 Nicotiana tabacum HOM05D006153 ORTHO05D007701 5.4e-14 81.3 85 44.7
VMungo0720G0345 Vigna mungo HOM05D006153 ORTHO05D007701 5.4e-14 81.3 56 60.7
Zm00001eb138020 Zea mays HOM05D006153 ORTHO05D007701 5.4e-14 81.3 108 38.0
Gorai.002G009800 Gossypium raimondii HOM05D006153 ORTHO05D007701 7.1e-14 80.9 50 64.0
Lalb_Chr02g0145121 Lupinus albus HOM05D006153 ORTHO05D007701 7.1e-14 80.9 49 65.3
Haze_10299 Corylus avellana HOM05D006153 ORTHO05D007701 9.3e-14 80.5 97 39.2
Manes.10G074900 Manihot esculenta HOM05D006153 ORTHO05D007701 9.3e-14 80.5 114 38.6
Sc14g0002580 Simmondsia chinensis HOM05D006153 ORTHO05D007701 9.3e-14 80.5 88 44.3
Glyma.20G131700 Glycine max HOM05D006153 ORTHO05D007701 1.2e-13 80.1 46 67.4
QL11p031990 Quercus lobata HOM05D006153 ORTHO05D007701 1.6e-13 79.7 57 57.9
GSVIVG01037871001 Vitis vinifera HOM05D006153 ORTHO05D007701 2.1e-13 79.3 56 58.9
TAR381G0917 Trochodendron aralioides HOM05D006153 ORTHO05D007701 2.7e-13 79.0 47 68.1
Glyma.10G259200 Glycine max HOM05D006153 ORTHO05D007701 3.5e-13 78.6 47 66.0
Dinv15786 Davidia involucrata HOM05D006153 ORTHO05D007701 4.6e-13 78.2 104 41.3
Thecc.02G113400 Theobroma cacao HOM05D006153 ORTHO05D007701 4.6e-13 78.2 86 43.0
Haze_10289 Corylus avellana HOM05D006153 ORTHO05D007701 6.0e-13 77.8 96 38.5
Eucgr.G00438 Eucalyptus grandis HOM05D006153 ORTHO05D007701 6.0e-13 77.8 83 48.2
Gohir.A01G008400 Gossypium hirsutum HOM05D006153 ORTHO05D007701 1.0e-12 77.0 50 60.0
GSVIVG01037872001 Vitis vinifera HOM05D006153 ORTHO05D007701 1.0e-12 77.0 52 59.6
Medtr5g005180 Medicago truncatula HOM05D006153 ORTHO05D007701 1.3e-12 76.6 40 75.0
TWI23G0900 Tripterygium wilfordii HOM05D006153 ORTHO05D007701 1.8e-12 76.3 53 67.9
Lj5g0020623 Lotus japonicus HOM05D006153 ORTHO05D007701 2.3e-12 75.9 45 66.7
CSS0010428 Camellia sinensis var. sinensis HOM05D006153 ORTHO05D007701 3.0e-12 75.5 106 36.8
COL.COLO4_32545 Corchorus olitorius HOM05D006153 ORTHO05D007701 3.0e-12 75.5 51 56.9
Oeu013772.1 Olea europaea HOM05D006153 ORTHO05D007701 3.0e-12 75.5 75 42.7
QL11p029270 Quercus lobata HOM05D006153 ORTHO05D007701 3.0e-12 75.5 51 60.8
GSVIVG01037873001 Vitis vinifera HOM05D006153 ORTHO05D007701 3.0e-12 75.5 51 60.8
Zm00001eb264740 Zea mays HOM05D006153 ORTHO05D007701 3.0e-12 75.5 108 36.1
HanXRQChr16g0514921 Helianthus annuus HOM05D006153 ORTHO05D007701 3.9e-12 75.1 44 63.6
MBI16_g15146_MAGBIO Magnolia biondii HOM05D006153 ORTHO05D007701 3.9e-12 75.1 107 38.3
Nn5g30510 Nelumbo nucifera HOM05D006153 ORTHO05D007701 3.9e-12 75.1 85 40.0
Nitab4.5_0012681g0010 Nicotiana tabacum HOM05D006153 ORTHO05D007701 3.9e-12 75.1 63 54.0
Os12g0507700 Oryza sativa ssp. japonica HOM05D006153 ORTHO05D007701 3.9e-12 75.1 97 36.1
Peaxi162Scf00152g00320 Petunia axillaris HOM05D006153 ORTHO05D007701 5.1e-12 74.7 61 50.8
Prupe.8G140400 Prunus persica HOM05D006153 ORTHO05D007701 5.1e-12 74.7 84 44.0
EL10Ac8g19360 Beta vulgaris HOM05D006153 ORTHO05D007701 6.7e-12 74.3 51 62.7
DCAR_001679 Daucus carota HOM05D006153 ORTHO05D007701 8.7e-12 73.9 69 50.7
Actinidia34374 Actinidia chinensis HOM05D006153 ORTHO05D007701 1.1e-11 73.6 54 63.0
AT3G19550 Arabidopsis thaliana HOM05D006153 ORTHO05D007701 1.1e-11 73.6 62 53.2
HanXRQChr16g0514451 Helianthus annuus HOM05D006153 ORTHO05D007701 1.1e-11 73.6 45 62.2
Nitab4.5_0002017g0030 Nicotiana tabacum HOM05D006153 ORTHO05D007701 1.1e-11 73.6 53 58.5
PSO541G5112 Papaver somniferum HOM05D006153 ORTHO05D007701 1.1e-11 73.6 105 36.2
Peaxi162Scf00016g00267 Petunia axillaris HOM05D006153 ORTHO05D007701 1.1e-11 73.6 66 48.5
A05p30090 Brassica napus HOM05D006153 ORTHO05D007701 1.5e-11 73.2 99 42.4
BraA05t21849Z Brassica rapa HOM05D006153 ORTHO05D007701 1.5e-11 73.2 99 42.4
Hma1.2p1_1174F.1_g263880 Hydrangea macrophylla HOM05D006153 ORTHO05D007701 1.5e-11 73.2 72 50.0
Psat4g228040 Pisum sativum HOM05D006153 ORTHO05D007701 1.5e-11 73.2 40 72.5
CARHR094970 Cardamine hirsuta HOM05D006153 ORTHO05D007701 1.9e-11 72.8 101 41.6
MD10G1102200 Malus domestica HOM05D006153 ORTHO05D007701 1.9e-11 72.8 80 47.5
MD05G1096000 Malus domestica HOM05D006153 ORTHO05D007701 2.5e-11 72.4 80 47.5
Potri.009G091100 Populus trichocarpa HOM05D006153 ORTHO05D007701 2.5e-11 72.4 48 62.5
BcaC05g28465 Brassica carinata HOM05D006153 ORTHO05D007701 3.3e-11 72.0 99 41.4
ATR0030G019 Amborella trichopoda HOM05D006153 ORTHO05D007701 4.3e-11 71.6 70 44.3
AL3G32960 Arabidopsis lyrata HOM05D006153 ORTHO05D007701 4.3e-11 71.6 62 51.6
Ciclev10029838m.g Citrus clementina HOM05D006153 ORTHO05D007701 4.3e-11 71.6 50 64.0
PGR042G3678 Punica granatum HOM05D006153 ORTHO05D007701 4.3e-11 71.6 47 61.7
TPR.G8325 Trifolium pratense HOM05D006153 ORTHO05D007701 4.3e-11 71.6 40 70.0
BcaB06g26014 Brassica carinata HOM05D006153 ORTHO05D007701 5.6e-11 71.2 47 61.7
C05p45510 Brassica napus HOM05D006153 ORTHO05D007701 5.6e-11 71.2 99 41.4
BolC5t33274H Brassica oleracea HOM05D006153 ORTHO05D007701 5.6e-11 71.2 99 41.4
Ca_24350_v3 Cicer arietinum L. HOM05D006153 ORTHO05D007701 7.4e-11 70.9 41 63.4
Peaxi162Scf00003g00261 Petunia axillaris HOM05D006153 ORTHO05D007701 7.4e-11 70.9 67 49.3
Lj5g0024415 Lotus japonicus HOM05D006153 ORTHO05D007701 9.6e-11 70.5 43 65.1
Sabra09G0070400 Salix brachista HOM05D006153 ORTHO05D007701 9.6e-11 70.5 86 39.5
Hund06709 Selenicereus undatus HOM05D006153 ORTHO05D007701 9.6e-11 70.5 51 56.9
BcaB04g20697 Brassica carinata HOM05D006153 ORTHO05D007701 1.3e-10 70.1 47 63.8
A01p35140 Brassica napus HOM05D006153 ORTHO05D007701 1.3e-10 70.1 47 63.8
BraA01t03596Z Brassica rapa HOM05D006153 ORTHO05D007701 1.3e-10 70.1 47 63.8
ECA234G4313 Erigeron canadensis HOM05D006153 ORTHO05D007701 1.3e-10 70.1 41 63.4
Gohir.A13G045400 Gossypium hirsutum HOM05D006153 ORTHO05D007701 1.3e-10 70.1 76 40.8
CANSAT25G0942 Cannabis sativa HOM05D006153 ORTHO05D007701 1.6e-10 69.7 54 57.4
Cfa004655 Carpinus fangiana HOM05D006153 ORTHO05D007701 1.6e-10 69.7 65 53.8
CiPaw.05G015200 Carya illinoinensis HOM05D006153 ORTHO05D007701 1.6e-10 69.7 53 60.4
Thhalv10021914m.g Eutrema salsugineum HOM05D006153 ORTHO05D007701 1.6e-10 69.7 70 47.1
RcHm_v2.0_Chr6g0253971 Rosa chinensis HOM05D006153 ORTHO05D007701 1.6e-10 69.7 83 47.0
BcaC09g48920 Brassica carinata HOM05D006153 ORTHO05D007701 2.1e-10 69.3 49 65.3
C01p44580 Brassica napus HOM05D006153 ORTHO05D007701 2.1e-10 69.3 49 65.3
AUR62031329 Chenopodium quinoa HOM05D006153 ORTHO05D007701 2.1e-10 69.3 72 41.7
DCAR_001674 Daucus carota HOM05D006153 ORTHO05D007701 2.1e-10 69.3 50 62.0
Nitab4.5_0001105g0220 Nicotiana tabacum HOM05D006153 ORTHO05D007701 2.1e-10 69.3 50 58.0
FvH4_2g04480 Fragaria vesca HOM05D006153 ORTHO05D007701 2.8e-10 68.9 63 55.6
FAN24G1230 Fragaria x ananassa HOM05D006153 ORTHO05D007701 2.8e-10 68.9 105 40.0
HanXRQChr16g0514461 Helianthus annuus HOM05D006153 ORTHO05D007701 2.8e-10 68.9 60 46.7
Rhsim05G0089900 Rhododendron simsii HOM05D006153 ORTHO05D007701 2.8e-10 68.9 51 60.8
HanXRQChr16g0514901 Helianthus annuus HOM05D006153 ORTHO05D007701 3.6e-10 68.6 44 56.8
Solyc01g107280.3 Solanum lycopersicum HOM05D006153 ORTHO05D007701 3.6e-10 68.6 101 38.6
A01p35130 Brassica napus HOM05D006153 ORTHO05D007701 6.2e-10 67.8 46 63.0
BraA01t03595Z Brassica rapa HOM05D006153 ORTHO05D007701 6.2e-10 67.8 46 63.0
Carub.0003s1938 Capsella rubella HOM05D006153 ORTHO05D007701 6.2e-10 67.8 62 48.4
Migut.I00275 Erythranthe guttata HOM05D006153 ORTHO05D007701 6.2e-10 67.8 42 64.3
FAN20G1027 Fragaria x ananassa HOM05D006153 ORTHO05D007701 6.2e-10 67.8 63 54.0
FAN27G0726 Fragaria x ananassa HOM05D006153 ORTHO05D007701 6.2e-10 67.8 63 54.0
Sp3g17600 Schrenkiella parvula HOM05D006153 ORTHO05D007701 6.2e-10 67.8 47 61.7
Aa31LG8G6290 Aethionema arabicum HOM05D006153 ORTHO05D007701 8.1e-10 67.4 75 45.3
Aqoxy6G02752 Aquilegia oxysepala HOM05D006153 ORTHO05D007701 8.1e-10 67.4 50 60.0
BolC1t04422H Brassica oleracea HOM05D006153 ORTHO05D007701 8.1e-10 67.4 49 63.3
Lsat_1_v5_gn_5_114460 Lactuca sativa HOM05D006153 ORTHO05D007701 8.1e-10 67.4 53 50.9
Sopen01g049530 Solanum pennellii HOM05D006153 ORTHO05D007701 8.1e-10 67.4 48 58.3
BcaB04g20696 Brassica carinata HOM05D006153 ORTHO05D007701 1.1e-09 67.0 47 59.6
PGSC0003DMG400025850 Solanum tuberosum HOM05D006153 ORTHO05D007701 1.1e-09 67.0 67 49.3
FAN15G1936 Fragaria x ananassa HOM05D006153 ORTHO05D007701 3.1e-09 65.5 95 41.1
SGA_v2.0_scaffold624G53237 Striga asiatica HOM05D006153 ORTHO05D007701 3.1e-09 65.5 81 38.3
TAR383G0592 Trochodendron aralioides HOM05D008232 ORTHO05D010390 4.0e-09 65.1 68 45.6
AUR62027357 Chenopodium quinoa HOM05D006153 ORTHO05D007701 5.3e-09 64.7 48 54.2
HanXRQChr13g0425861 Helianthus annuus HOM05D006153 ORTHO05D007701 5.3e-09 64.7 44 52.3
Actinidia27982 Actinidia chinensis HOM05D006153 ORTHO05D007701 2.0e-08 62.8 44 59.1
ECA234G3366 Erigeron canadensis HOM05D006153 ORTHO05D007701 3.4e-08 62.0 41 58.5
Thhalv10021904m.g Eutrema salsugineum HOM05D006153 ORTHO05D007701 4.5e-08 61.6 47 57.4
Eucgr.G01281 Eucalyptus grandis HOM05D006153 ORTHO05D007701 5.8e-08 61.2 64 43.8
Cpa.g.sc2471.1 Carica papaya HOM05D008232 ORTHO05D010390 9.9e-08 60.5 37 70.3
Aqoxy6G02750 Aquilegia oxysepala HOM05D000096 ORTHO05D000045 1.7e-07 59.7 32 75.0
DCAR_003609 Daucus carota HOM05D006153 ORTHO05D007701 1.1e-06 57.0 65 46.2
COL.COLO4_26749 Corchorus olitorius HOM05D008232 ORTHO05D010390 2.4e-06 55.8 41 48.8
CANSAT64G1479 Cannabis sativa HOM05D008232 ORTHO05D010390 3.2e-06 55.5 63 41.3
Ciclev10026814m.g Citrus clementina HOM05D008232 ORTHO05D010390 3.2e-06 55.5 40 55.0
Duzib235G0354 Durio zibethinus HOM05D008232 ORTHO05D010390 5.5e-06 54.7 44 47.7
Aqoxy7G03060 Aquilegia oxysepala HOM05D008232 ORTHO05D010390 7.1e-06 54.3 67 38.8


User provided reference genes

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