Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0025893 Sechium edule HOM05D007491 ORTHO05D009489 1.7e-43 179.1 103 100.0
CsaV3_2G002190 Cucumis sativus L. HOM05D007491 ORTHO05D009489 2.9e-30 135.2 103 80.6
ClCG11G002390 Citrullus lanatus HOM05D007491 ORTHO05D009489 3.5e-28 128.3 97 79.4
Sed0000101 Sechium edule HOM05D007491 ORTHO05D009489 4.6e-28 127.9 103 79.6
MELO3C004564.2 Cucumis melo HOM05D007491 ORTHO05D009489 2.8e-25 118.6 96 77.1
THA.LOC104822629 Tarenaya hassleriana HOM05D007491 ORTHO05D009489 3.9e-19 98.2 104 61.5
CSS0038485 Camellia sinensis var. sinensis HOM05D007491 ORTHO05D009489 1.1e-18 96.7 103 64.1
Prupe.7G233600 Prunus persica HOM05D007491 ORTHO05D009489 2.5e-18 95.5 103 65.0
CiPaw.03G229400 Carya illinoinensis HOM05D007491 ORTHO05D009489 2.8e-17 92.0 103 62.1
Nn2g11682 Nelumbo nucifera HOM05D007491 ORTHO05D009489 4.8e-17 91.3 104 62.5
TAR383G0584 Trochodendron aralioides HOM05D007491 ORTHO05D009489 1.1e-16 90.1 97 61.9
Potri.018G082800 Populus trichocarpa HOM05D007491 ORTHO05D009489 1.4e-16 89.7 105 58.1
Dinv41621 Davidia involucrata HOM05D007491 ORTHO05D009489 1.8e-16 89.4 97 64.9
AT1G55205 Arabidopsis thaliana HOM05D007491 ORTHO05D009489 2.4e-16 89.0 103 59.2
Carub.0001s4372 Capsella rubella HOM05D007491 ORTHO05D009489 4.0e-16 88.2 103 60.2
AL1G63250 Arabidopsis lyrata HOM05D007491 ORTHO05D009489 5.3e-16 87.8 103 58.3
Thhalv10011893m.g Eutrema salsugineum HOM05D007491 ORTHO05D009489 6.9e-16 87.4 103 60.2
CARHR044840 Cardamine hirsuta HOM05D007491 ORTHO05D009489 9.0e-16 87.0 103 61.2
MD15G1182000 Malus domestica HOM05D007491 ORTHO05D009489 1.5e-15 86.3 103 60.2
Gohir.D07G006700 Gossypium hirsutum HOM05D007491 ORTHO05D009489 2.0e-15 85.9 102 58.8
RcHm_v2.0_Chr2g0090011 Rosa chinensis HOM05D007491 ORTHO05D009489 2.6e-15 85.5 104 63.5
GSVIVG01035656001 Vitis vinifera HOM05D007491 ORTHO05D009489 2.6e-15 85.5 103 56.3
CANSAT78G0421 Cannabis sativa HOM05D007491 ORTHO05D009489 3.4e-15 85.1 103 60.2
Sp1g40890 Schrenkiella parvula HOM05D007491 ORTHO05D009489 5.8e-15 84.3 103 55.3
Gohir.A07G005300 Gossypium hirsutum HOM05D007491 ORTHO05D009489 7.6e-15 84.0 102 57.8
Lalb_Chr16g0388121 Lupinus albus HOM05D007491 ORTHO05D009489 7.6e-15 84.0 103 54.4
CARHR088390 Cardamine hirsuta HOM05D007491 ORTHO05D009489 1.3e-14 83.2 103 57.3
Eucgr.C03814 Eucalyptus grandis HOM05D007491 ORTHO05D009489 2.9e-14 82.0 105 59.0
Lalb_Chr05g0222981 Lupinus albus HOM05D007491 ORTHO05D009489 3.8e-14 81.6 103 53.4
MD02G1043400 Malus domestica HOM05D007491 ORTHO05D009489 3.8e-14 81.6 103 55.3
Carub.0003s1318 Capsella rubella HOM05D007491 ORTHO05D009489 4.9e-14 81.3 103 56.3
Haze_25768 Corylus avellana HOM05D007491 ORTHO05D009489 4.9e-14 81.3 99 59.6
Thhalv10021835m.g Eutrema salsugineum HOM05D007491 ORTHO05D009489 6.4e-14 80.9 103 56.3
TWI63G0394 Tripterygium wilfordii HOM05D007491 ORTHO05D009489 6.4e-14 80.9 103 52.4
TWI34G1809 Tripterygium wilfordii HOM05D007491 ORTHO05D009489 8.4e-14 80.5 103 54.4
PGR102G1855 Punica granatum HOM05D007491 ORTHO05D009489 1.1e-13 80.1 103 57.3
Thecc.09G107500 Theobroma cacao HOM05D007491 ORTHO05D009489 1.1e-13 80.1 102 58.8
Cfa003238 Carpinus fangiana HOM05D007491 ORTHO05D009489 1.4e-13 79.7 100 61.0
COL.COLO4_18682 Corchorus olitorius HOM05D007491 ORTHO05D009489 1.9e-13 79.3 103 55.3
Duzib150G1582 Durio zibethinus HOM05D007491 ORTHO05D009489 2.4e-13 79.0 104 56.7
Psat7g015280 Pisum sativum HOM05D007491 ORTHO05D009489 2.4e-13 79.0 102 52.0
AT3G13674 Arabidopsis thaliana HOM05D007491 ORTHO05D009489 3.2e-13 78.6 103 51.5
Cc06_g09900 Coffea canephora HOM05D007491 ORTHO05D009489 4.2e-13 78.2 99 55.6
Lsat_1_v5_gn_5_103040 Lactuca sativa HOM05D007491 ORTHO05D009489 5.4e-13 77.8 104 55.8
Duzib187G0523 Durio zibethinus HOM05D007491 ORTHO05D009489 7.1e-13 77.4 104 56.7
Gohir.D06G094200 Gossypium hirsutum HOM05D007491 ORTHO05D009489 7.1e-13 77.4 108 56.5
Gorai.010G108700 Gossypium raimondii HOM05D007491 ORTHO05D009489 7.1e-13 77.4 108 56.5
BcaC01g01475 Brassica carinata HOM05D007491 ORTHO05D009489 9.3e-13 77.0 99 54.5
C03p92400 Brassica napus HOM05D007491 ORTHO05D009489 9.3e-13 77.0 99 54.5
BolC3t21548H Brassica oleracea HOM05D007491 ORTHO05D009489 9.3e-13 77.0 99 54.5
Ca_17329_v3 Cicer arietinum L. HOM05D007491 ORTHO05D009489 1.6e-12 76.3 103 58.3
Glyma.08G037500 Glycine max HOM05D007491 ORTHO05D009489 1.6e-12 76.3 103 51.5
PSO782G0237 Papaver somniferum HOM05D007491 ORTHO05D009489 1.6e-12 76.3 102 57.8
Lj4g0004733 Lotus japonicus HOM05D007491 ORTHO05D009489 2.1e-12 75.9 56 73.2
Thecc.09G041400 Theobroma cacao HOM05D007491 ORTHO05D009489 2.1e-12 75.9 104 54.8
A08p00850 Brassica napus HOM05D007491 ORTHO05D009489 2.7e-12 75.5 99 53.5
BraA08t32143Z Brassica rapa HOM05D007491 ORTHO05D009489 2.7e-12 75.5 99 53.5
Sabra18G0070600 Salix brachista HOM05D007491 ORTHO05D009489 2.7e-12 75.5 99 55.6
FvH4_1g04361 Fragaria vesca HOM05D007491 ORTHO05D009489 3.5e-12 75.1 103 57.3
Hma1.2p1_1463F.1_g285180 Hydrangea macrophylla HOM05D007491 ORTHO05D009489 4.6e-12 74.7 91 56.0
Ciclev10010011m.g Citrus clementina HOM05D007491 ORTHO05D009489 1.0e-11 73.6 105 54.3
FAN19G0791 Fragaria x ananassa HOM05D007491 ORTHO05D009489 1.0e-11 73.6 103 56.3
Phvul.002G312200 Phaseolus vulgaris HOM05D007491 ORTHO05D009489 1.0e-11 73.6 103 50.5
HanXRQChr12g0355021 Helianthus annuus HOM05D007491 ORTHO05D009489 1.3e-11 73.2 102 50.0
Manes.03G022800 Manihot esculenta HOM05D007491 ORTHO05D009489 1.3e-11 73.2 94 57.4
Manes.16G071301 Manihot esculenta HOM05D007491 ORTHO05D009489 1.3e-11 73.2 103 54.4
TPR.G23496 Trifolium pratense HOM05D007491 ORTHO05D009489 1.3e-11 73.2 102 50.0
C06p10160 Brassica napus HOM05D007491 ORTHO05D009489 1.7e-11 72.8 99 55.6
FAN23G1386 Fragaria x ananassa HOM05D007491 ORTHO05D009489 2.3e-11 72.4 103 53.4
Glyma.05G230000 Glycine max HOM05D007491 ORTHO05D009489 2.3e-11 72.4 103 49.5
PSO566G0269 Papaver somniferum HOM05D007491 ORTHO05D009489 2.3e-11 72.4 102 55.9
HanXRQChr10g0318621 Helianthus annuus HOM05D007491 ORTHO05D009489 5.1e-11 71.2 103 51.5
Nn3g18087 Nelumbo nucifera HOM05D007491 ORTHO05D009489 5.1e-11 71.2 90 56.7
Oeu013426.2 Olea europaea HOM05D007491 ORTHO05D009489 5.1e-11 71.2 97 54.6
BcaB04g16984 Brassica carinata HOM05D007491 ORTHO05D009489 6.6e-11 70.9 96 55.2
Rhsim01G0100500 Rhododendron simsii HOM05D007491 ORTHO05D009489 8.7e-11 70.5 98 56.1
Dinv36653 Davidia involucrata HOM05D007491 ORTHO05D009489 1.5e-10 69.7 97 51.5
A06p00340 Brassica napus HOM05D007491 ORTHO05D009489 3.3e-10 68.6 99 53.5
BolC6t36089H Brassica oleracea HOM05D000490 ORTHO05D000785 3.3e-10 68.6 90 54.4
BraA06t23249Z Brassica rapa HOM05D007491 ORTHO05D009489 3.3e-10 68.6 99 53.5
Gohir.A06G094700 Gossypium hirsutum HOM05D007491 ORTHO05D009489 3.3e-10 68.6 114 50.9
Gorai.001G006300 Gossypium raimondii HOM05D007491 ORTHO05D009489 4.3e-10 68.2 102 52.9
Lj2g0023927 Lotus japonicus HOM05D007491 ORTHO05D009489 7.3e-10 67.4 103 53.4
ECA234G1405 Erigeron canadensis HOM05D007491 ORTHO05D009489 9.6e-10 67.0 102 48.0
TWI32G0642 Tripterygium wilfordii HOM05D007491 ORTHO05D009489 9.6e-10 67.0 103 49.5
VMungo0251G1641 Vigna mungo HOM05D007491 ORTHO05D009489 1.3e-09 66.6 97 51.5
Medtr8g103300 Medicago truncatula HOM05D007491 ORTHO05D009489 3.6e-09 65.1 98 46.9
CDE05G2495 Ceratophyllum demersum HOM05D001777 ORTHO05D001809 4.8e-09 64.7 85 51.8
CDE05G0808 Ceratophyllum demersum HOM05D007491 ORTHO05D009489 8.1e-09 63.9 104 47.1
Ciclev10010763m.g Citrus clementina HOM05D007491 ORTHO05D009489 9.0e-08 60.5 42 73.8
Os02g0273900 Oryza sativa ssp. japonica HOM05D007491 ORTHO05D009489 9.0e-08 60.5 56 57.1
FAN26G2745 Fragaria x ananassa HOM05D001691 ORTHO05D001704 1.5e-07 59.7 98 54.1
AUR62009312 Chenopodium quinoa HOM05D007491 ORTHO05D009489 2.0e-07 59.3 65 55.4
Peaxi162Scf00231g00326 Petunia axillaris HOM05D007491 ORTHO05D009489 4.5e-07 58.2 100 48.0
Lsat_1_v5_gn_5_33441 Lactuca sativa HOM05D007491 ORTHO05D009489 7.6e-07 57.4 93 47.3
arahy.Tifrunner.gnm1.ann1.KI7M62 Arachis hypogaea HOM05D007491 ORTHO05D009489 9.9e-07 57.0 92 50.0
Prupe.8G097200 Prunus persica HOM05D006766 ORTHO05D008534 9.9e-07 57.0 80 45.0
arahy.Tifrunner.gnm1.ann1.RT52KZ Arachis hypogaea HOM05D007491 ORTHO05D009489 1.3e-06 56.6 88 54.5
Os06g0332500 Oryza sativa ssp. japonica HOM05D007491 ORTHO05D009489 3.8e-06 55.1 74 48.6
FvH4_2g08780 Fragaria vesca HOM05D006766 ORTHO05D008534 4.9e-06 54.7 90 42.2
GSVIVG01031965001 Vitis vinifera HOM05D006766 ORTHO05D008534 4.9e-06 54.7 82 46.3
TAR625G1191 Trochodendron aralioides HOM05D006766 ORTHO05D008534 6.4e-06 54.3 62 51.6


User provided reference genes

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