Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0025843 Sechium edule HOM05D004631 ORTHO05D005223 1.8e-134 482.6 253 100.0
ClCG11G006850 Citrullus lanatus HOM05D004631 ORTHO05D005223 4.5e-101 371.7 279 74.6
CsaV3_6G001200 Cucumis sativus L. HOM05D004631 ORTHO05D005223 2.2e-100 369.4 233 85.0
Sed0000329 Sechium edule HOM05D004631 ORTHO05D005223 2.1e-98 362.8 254 78.7
Duzib147G1024 Durio zibethinus HOM05D004631 ORTHO05D005223 1.2e-77 293.9 256 62.1
Hma1.2p1_0227F.1_g095910 Hydrangea macrophylla HOM05D004631 ORTHO05D005223 1.2e-77 293.9 247 65.6
TWI59G0755 Tripterygium wilfordii HOM05D004631 ORTHO05D005223 7.7e-77 291.2 256 61.7
FAN02G2863 Fragaria x ananassa HOM05D004631 ORTHO05D005223 2.2e-76 289.7 245 65.3
Rhsim08G0046200 Rhododendron simsii HOM05D004631 ORTHO05D005223 3.8e-76 288.9 246 65.4
CiPaw.03G050500 Carya illinoinensis HOM05D004631 ORTHO05D005223 1.1e-75 287.3 245 62.4
Lj7A605T75 Lonicera japonica HOM05D004631 ORTHO05D005223 1.1e-75 287.3 243 65.4
Prupe.3G299600 Prunus persica HOM05D004631 ORTHO05D005223 2.5e-75 286.2 255 63.5
QL02p072911 Quercus lobata HOM05D004631 ORTHO05D005223 3.2e-75 285.8 261 60.9
CANSAT64G0886 Cannabis sativa HOM05D004631 ORTHO05D005223 1.6e-74 283.5 257 59.5
Gorai.011G093000 Gossypium raimondii HOM05D004631 ORTHO05D005223 2.1e-74 283.1 257 58.8
RhsimUnG0241300 Rhododendron simsii HOM05D004631 ORTHO05D005223 3.6e-74 282.3 242 63.6
Thecc.04G027600 Theobroma cacao HOM05D004631 ORTHO05D005223 6.1e-74 281.6 249 62.7
CSS0019664 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 2.3e-73 279.6 248 64.1
CiPaw.04G033100 Carya illinoinensis HOM05D004631 ORTHO05D005223 3.0e-73 279.3 246 62.6
Gohir.D10G085100 Gossypium hirsutum HOM05D004631 ORTHO05D005223 3.9e-73 278.9 257 58.8
Glyma.16G063100 Glycine max HOM05D004631 ORTHO05D005223 5.2e-73 278.5 260 61.9
Cfa007277 Carpinus fangiana HOM05D004631 ORTHO05D005223 6.7e-73 278.1 245 61.2
Duzib264G0826 Durio zibethinus HOM05D004631 ORTHO05D005223 6.7e-73 278.1 255 57.6
vmacro18314 Vaccinium macrocarpon HOM05D004631 ORTHO05D005223 6.7e-73 278.1 228 67.1
CSS0019474 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 8.8e-73 277.7 246 63.0
FvH4_6g52650 Fragaria vesca HOM05D004631 ORTHO05D005223 2.0e-72 276.6 245 62.9
GSVIVG01001850001 Vitis vinifera HOM05D004631 ORTHO05D005223 2.6e-72 276.2 235 66.0
Haze_14815 Corylus avellana HOM05D004631 ORTHO05D005223 4.4e-72 275.4 263 58.6
FAN05G1873 Fragaria x ananassa HOM05D004631 ORTHO05D005223 5.7e-72 275.0 246 63.8
Gohir.A10G160500 Gossypium hirsutum HOM05D004631 ORTHO05D005223 5.7e-72 275.0 259 57.9
MD17G1018100 Malus domestica HOM05D004631 ORTHO05D005223 7.4e-72 274.6 251 64.9
Hma1.2p1_0279F.1_g112270 Hydrangea macrophylla HOM05D004631 ORTHO05D005223 9.7e-72 274.2 244 62.7
Manes.15G156400 Manihot esculenta HOM05D004631 ORTHO05D005223 9.7e-72 274.2 235 63.8
MELO3C008218.2 Cucumis melo HOM05D004631 ORTHO05D005223 1.3e-71 273.9 187 80.7
vmacro05924 Vaccinium macrocarpon HOM05D004631 ORTHO05D005223 1.3e-71 273.9 247 63.6
FAN14G1903 Fragaria x ananassa HOM05D004631 ORTHO05D005223 1.7e-71 273.5 246 63.0
COL.COLO4_29276 Corchorus olitorius HOM05D004631 ORTHO05D005223 3.7e-71 272.3 230 65.2
Lsat_1_v5_gn_0_32720 Lactuca sativa HOM05D004631 ORTHO05D005223 3.7e-71 272.3 246 61.4
Gorai.012G089800 Gossypium raimondii HOM05D004631 ORTHO05D005223 6.3e-71 271.6 257 56.0
arahy.Tifrunner.gnm1.ann1.5W0L45 Arachis hypogaea HOM05D004631 ORTHO05D005223 1.4e-70 270.4 255 59.2
FAN09G3073 Fragaria x ananassa HOM05D004631 ORTHO05D005223 1.4e-70 270.4 246 63.4
Sabra09G0043700 Salix brachista HOM05D004631 ORTHO05D005223 1.4e-70 270.4 257 59.1
Gohir.D04G079800 Gossypium hirsutum HOM05D004631 ORTHO05D005223 1.8e-70 270.0 258 57.0
MD09G1017300 Malus domestica HOM05D004631 ORTHO05D005223 1.8e-70 270.0 255 59.6
RcHm_v2.0_Chr2g0174181 Rosa chinensis HOM05D004631 ORTHO05D005223 1.8e-70 270.0 245 62.9
arahy.Tifrunner.gnm1.ann1.NS464T Arachis hypogaea HOM05D004631 ORTHO05D005223 3.1e-70 269.2 255 59.2
HanXRQChr17g0549531 Helianthus annuus HOM05D004631 ORTHO05D005223 5.3e-70 268.5 234 64.5
CARHR148590 Cardamine hirsuta HOM05D004631 ORTHO05D005223 7.0e-70 268.1 253 57.3
SGA_v2.0_scaffold18G08240 Striga asiatica HOM05D004631 ORTHO05D005223 1.2e-69 267.3 256 60.2
PGR142G2057 Punica granatum HOM05D004631 ORTHO05D005223 1.6e-69 266.9 258 60.5
CAN.G473.59 Capsicum annuum HOM05D004631 ORTHO05D005223 2.0e-69 266.5 252 59.5
Ca_04405_v3 Cicer arietinum L. HOM05D004631 ORTHO05D005223 2.6e-69 266.2 247 60.3
Sabra16G0162600 Salix brachista HOM05D004631 ORTHO05D005223 3.5e-69 265.8 256 57.4
Glyma.19G082400 Glycine max HOM05D004631 ORTHO05D005223 4.5e-69 265.4 261 60.5
Sopen02g038460 Solanum pennellii HOM05D004631 ORTHO05D005223 4.5e-69 265.4 245 59.2
Solyc02g093820.4 Solanum lycopersicum HOM05D004631 ORTHO05D005223 5.9e-69 265.0 245 59.2
PGSC0003DMG400020270 Solanum tuberosum HOM05D004631 ORTHO05D005223 5.9e-69 265.0 256 57.8
Manes.07G089400 Manihot esculenta HOM05D004631 ORTHO05D005223 7.7e-69 264.6 235 62.1
Potri.009G059300 Populus trichocarpa HOM05D004631 ORTHO05D005223 1.0e-68 264.2 256 57.8
Potri.001G264500 Populus trichocarpa HOM05D004631 ORTHO05D005223 2.2e-68 263.1 256 57.8
Carub.0005s0558 Capsella rubella HOM05D004631 ORTHO05D005223 2.9e-68 262.7 245 58.8
Eucgr.I01692 Eucalyptus grandis HOM05D004631 ORTHO05D005223 2.9e-68 262.7 247 62.3
Thhalv10004822m.g Eutrema salsugineum HOM05D004631 ORTHO05D005223 3.8e-68 262.3 253 56.9
Nn4g22438 Nelumbo nucifera HOM05D004631 ORTHO05D005223 8.5e-68 261.2 248 58.1
MSTRG.24067 Avicennia marina HOM05D004631 ORTHO05D005223 1.1e-67 260.8 244 59.0
PSO782G2324 Papaver somniferum HOM05D004631 ORTHO05D005223 1.9e-67 260.0 248 56.5
TAR629G3282 Trochodendron aralioides HOM05D004631 ORTHO05D005223 1.9e-67 260.0 245 58.8
TWI23G0469 Tripterygium wilfordii HOM05D004631 ORTHO05D005223 2.5e-67 259.6 256 58.2
Atru.chr6.2487 Acer truncatum HOM05D004631 ORTHO05D005223 4.2e-67 258.8 256 56.2
Cpa.g.c34704 Carica papaya HOM05D004631 ORTHO05D005223 9.4e-67 257.7 227 61.2
Aqoxy5G03556 Aquilegia oxysepala HOM05D004631 ORTHO05D005223 1.2e-66 257.3 243 57.6
AT3G27310 Arabidopsis thaliana HOM05D004631 ORTHO05D005223 1.2e-66 257.3 245 57.6
DCAR_021756 Daucus carota HOM05D004631 ORTHO05D005223 1.2e-66 257.3 240 59.6
ECA246G0472 Erigeron canadensis HOM05D004631 ORTHO05D005223 1.2e-66 257.3 242 62.4
Ciclev10016175m.g Citrus clementina HOM05D004631 ORTHO05D005223 1.6e-66 256.9 289 52.2
Lj2g0014181 Lotus japonicus HOM05D004631 ORTHO05D005223 2.1e-66 256.5 258 56.2
TAR371G0552 Trochodendron aralioides HOM05D004631 ORTHO05D005223 2.1e-66 256.5 245 58.4
AUR62032242 Chenopodium quinoa HOM05D004631 ORTHO05D005223 2.7e-66 256.1 245 58.4
Migut.H00060 Erythranthe guttata HOM05D004631 ORTHO05D005223 2.7e-66 256.1 261 56.3
Cc07_g00410 Coffea canephora HOM05D004631 ORTHO05D005223 4.7e-66 255.4 244 59.4
Gohir.A05G341700 Gossypium hirsutum HOM05D004631 ORTHO05D005223 8.0e-66 254.6 242 56.2
Lalb_Chr14g0363051 Lupinus albus HOM05D004631 ORTHO05D005223 1.4e-65 253.8 253 56.1
EL10Ac5g10455 Beta vulgaris HOM05D004631 ORTHO05D005223 1.8e-65 253.4 254 59.1
HanXRQChr15g0487081 Helianthus annuus HOM05D004631 ORTHO05D005223 1.8e-65 253.4 245 60.4
AL5G16540 Arabidopsis lyrata HOM05D004631 ORTHO05D005223 3.0e-65 252.7 231 58.9
PSO063G4908 Papaver somniferum HOM05D004631 ORTHO05D005223 4.0e-65 252.3 248 56.0
BcaC06g31006 Brassica carinata HOM05D004631 ORTHO05D005223 8.8e-65 251.1 258 55.8
AUR62011927 Chenopodium quinoa HOM05D004631 ORTHO05D005223 2.0e-64 250.0 245 57.6
Oeu050430.2 Olea europaea HOM05D004631 ORTHO05D005223 2.6e-64 249.6 281 52.7
TPR.G29003 Trifolium pratense HOM05D004631 ORTHO05D005223 3.3e-64 249.2 253 56.5
Peaxi162Scf00420g00342 Petunia axillaris HOM05D004631 ORTHO05D005223 5.7e-64 248.4 245 57.6
Phvul.008G148800 Phaseolus vulgaris HOM05D004631 ORTHO05D005223 5.7e-64 248.4 256 55.5
Peaxi162Scf00420g00345 Petunia axillaris HOM05D004631 ORTHO05D005223 7.5e-64 248.1 245 57.1
Psat1g084240 Pisum sativum HOM05D004631 ORTHO05D005223 1.7e-63 246.9 253 56.5
Sp2g16470 Schrenkiella parvula HOM05D004631 ORTHO05D005223 4.8e-63 245.4 257 53.3
Aa31LG2G5340 Aethionema arabicum HOM05D004631 ORTHO05D005223 1.1e-62 244.2 268 52.6
SalBow1G3920 Salvia bowleyana HOM05D004631 ORTHO05D005223 1.4e-62 243.8 277 52.3
VMungo1383G3654 Vigna mungo HOM05D004631 ORTHO05D005223 1.8e-62 243.4 229 58.5
ECA232G0338 Erigeron canadensis HOM05D004631 ORTHO05D005223 7.0e-62 241.5 243 56.4
Actinidia05943 Actinidia chinensis HOM05D000918 ORTHO05D000791 9.1e-62 241.1 228 60.5
SalBow1G0328 Salvia bowleyana HOM05D004631 ORTHO05D005223 9.1e-62 241.1 277 52.0
BcaC06g33833 Brassica carinata HOM05D004631 ORTHO05D005223 2.0e-61 240.0 261 51.0
BolC7t44152H Brassica oleracea HOM05D004631 ORTHO05D005223 2.0e-61 240.0 261 51.0
Lsat_1_v5_gn_4_185741 Lactuca sativa HOM05D004631 ORTHO05D005223 2.0e-61 240.0 246 57.3
Sc03g0007030 Simmondsia chinensis HOM05D004631 ORTHO05D005223 2.0e-61 240.0 192 66.1
MSTRG.3110 Avicennia marina HOM05D004631 ORTHO05D005223 2.7e-61 239.6 244 55.3
unitig_62.g23368 Utricularia gibba HOM05D004631 ORTHO05D005223 2.7e-61 239.6 225 58.2
C07p36360 Brassica napus HOM05D004631 ORTHO05D005223 3.5e-61 239.2 253 51.8
Dinv25693 Davidia involucrata HOM05D004631 ORTHO05D005223 7.7e-61 238.0 205 64.4
A06p41300 Brassica napus HOM05D004631 ORTHO05D005223 1.0e-60 237.7 258 51.2
BraA06t27055Z Brassica rapa HOM05D004631 ORTHO05D005223 1.0e-60 237.7 258 51.2
Ah.11g049900 Amaranthus hybridus HOM05D000470 ORTHO05D000348 3.8e-60 235.7 230 56.5
CSS0005098 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 7.2e-59 231.5 185 67.0
Dinv33383 Davidia involucrata HOM05D004631 ORTHO05D005223 2.7e-58 229.6 165 71.5
DCAR_011290 Daucus carota HOM05D004631 ORTHO05D005223 3.6e-58 229.2 235 57.0
MBI05_g32279_MAGBIO Magnolia biondii HOM05D004631 ORTHO05D005223 4.0e-57 225.7 232 56.0
Oeu058758.2 Olea europaea HOM05D004631 ORTHO05D005223 1.1e-54 217.6 168 67.3
Medtr6g023080 Medicago truncatula HOM05D004631 ORTHO05D005223 3.5e-53 212.6 203 58.1
Lj1g0026695 Lotus japonicus HOM05D004631 ORTHO05D005223 8.6e-52 208.0 265 48.3
HPP92_028037 Vanilla planifolia HOM05D004631 ORTHO05D005223 7.2e-51 204.9 238 51.3
Nitab4.5_0001863g0070 Nicotiana tabacum HOM05D004631 ORTHO05D005223 1.2e-50 204.1 236 53.0
ATR0824G076 Amborella trichopoda HOM05D004631 ORTHO05D005223 2.1e-50 203.4 248 51.2
Medtr6g022770 Medicago truncatula HOM05D004631 ORTHO05D005223 5.4e-46 188.7 177 57.1
TPR.G2332 Trifolium pratense HOM05D004631 ORTHO05D005223 3.8e-44 182.6 158 60.1
Os04g0485200 Oryza sativa ssp. japonica HOM05D004631 ORTHO05D005223 4.3e-43 179.1 231 46.3
Prupe.8G176800 Prunus persica HOM05D004631 ORTHO05D005223 7.3e-43 178.3 125 70.4
Zm00001eb425170 Zea mays HOM05D004631 ORTHO05D005223 7.3e-43 178.3 242 47.1
Zm00001eb079230 Zea mays HOM05D004631 ORTHO05D005223 2.3e-41 173.3 248 45.2
Ciclev10003548m.g Citrus clementina HOM05D004631 ORTHO05D005223 6.8e-41 171.8 247 47.4
MD10G1138200 Malus domestica HOM05D004631 ORTHO05D005223 2.0e-40 170.2 143 59.4
Medtr0531s0010 Medicago truncatula HOM05D004631 ORTHO05D005223 2.6e-40 169.9 167 57.5
Mapoly0078s0021 Marchantia polymorpha HOM05D004631 ORTHO05D005223 4.3e-35 152.5 226 42.5
SMO199G0125 Selaginella moellendorffii HOM05D004631 ORTHO05D005223 1.1e-30 137.9 235 37.0
Actinidia35792 Actinidia chinensis HOM05D004631 ORTHO05D005223 1.4e-30 137.5 114 67.5
Nitab4.5_0008718g0050 Nicotiana tabacum HOM05D004631 ORTHO05D005223 1.9e-30 137.1 172 50.0
Potri.001G337533 Populus trichocarpa HOM05D004631 ORTHO05D005223 1.0e-28 131.3 214 40.7
Pp3c7_140 Physcomitrium patens HOM05D004631 ORTHO05D005223 6.6e-28 128.6 245 35.1
Eucgr.L03061 Eucalyptus grandis HOM05D004631 ORTHO05D005223 1.1e-27 127.9 81 72.8
FAN27G0193 Fragaria x ananassa HOM05D004631 ORTHO05D005223 2.8e-26 123.2 138 53.6
FAN24G1590 Fragaria x ananassa HOM05D004631 ORTHO05D005223 4.7e-26 122.5 138 53.6
FvH4_2g09210 Fragaria vesca HOM05D004631 ORTHO05D005223 1.1e-25 121.3 137 53.3
Medtr4g103350 Medicago truncatula HOM05D004631 ORTHO05D005223 7.5e-24 115.2 150 47.3
A09p03370 Brassica napus HOM05D004631 ORTHO05D005223 3.2e-22 109.8 118 50.0
BraA09t35975Z Brassica rapa HOM05D004631 ORTHO05D005223 3.2e-22 109.8 118 50.0
BraA09t35976Z Brassica rapa HOM05D004631 ORTHO05D005223 3.2e-22 109.8 118 50.0
BcaC04g23906 Brassica carinata HOM05D004631 ORTHO05D005223 1.6e-21 107.5 164 43.9
HPP92_027613 Vanilla planifolia HOM05D004631 ORTHO05D005223 5.6e-19 99.0 123 48.8
RcHm_v2.0_Chr6g0265061 Rosa chinensis HOM05D004631 ORTHO05D005223 1.7e-15 87.4 117 53.8
BcaB04g19435 Brassica carinata HOM05D002252 ORTHO05D002451 1.6e-13 80.9 103 48.5
SMO361G0265 Selaginella moellendorffii HOM05D022709 ORTHO05D005223 5.1e-12 75.9 202 30.7
SMO361G0508 Selaginella moellendorffii HOM05D022709 ORTHO05D005223 1.1e-11 74.7 198 31.8
Zm00001eb055680 Zea mays HOM05D004631 ORTHO05D005223 1.6e-10 70.9 101 43.6
Actinidia36166 Actinidia chinensis HOM05D004631 ORTHO05D005223 1.1e-09 68.2 57 66.7
HPP92_027614 Vanilla planifolia HOM05D004631 ORTHO05D005223 1.4e-09 67.8 112 44.6
Sabra16G0218300 Salix brachista HOM05D004631 ORTHO05D005223 3.4e-08 63.2 44 68.2


User provided reference genes

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