Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0025834 Sechium edule HOM05D004655 ORTHO05D005567 4.1e-162 574.7 299 100.0
MELO3C018772.2 Cucumis melo HOM05D004655 ORTHO05D005567 1.4e-141 506.5 299 88.3
ClCG00G002920 Citrullus lanatus HOM05D004655 ORTHO05D005567 9.9e-140 500.4 299 86.6
ClCG02G001360 Citrullus lanatus HOM05D004655 ORTHO05D005567 9.9e-140 500.4 299 86.6
CsaV3_7G004070 Cucumis sativus L. HOM05D004655 ORTHO05D005567 1.6e-137 493.0 297 86.5
QL08p036998 Quercus lobata HOM05D004655 ORTHO05D005567 4.6e-121 438.3 292 76.7
Gohir.A04G106100 Gossypium hirsutum HOM05D004655 ORTHO05D005567 6.6e-120 434.5 293 76.1
Gohir.D04G146200 Gossypium hirsutum HOM05D004655 ORTHO05D005567 1.5e-119 433.3 293 76.1
Gorai.012G132100 Gossypium raimondii HOM05D004655 ORTHO05D005567 2.5e-119 432.6 293 76.1
COL.COLO4_13659 Corchorus olitorius HOM05D004655 ORTHO05D005567 3.3e-119 432.2 294 75.9
CSS0017466 Camellia sinensis var. sinensis HOM05D004655 ORTHO05D005567 7.3e-119 431.0 291 77.7
MD09G1097200 Malus domestica HOM05D004655 ORTHO05D005567 9.6e-119 430.6 295 74.6
Thecc.02G170400 Theobroma cacao HOM05D004655 ORTHO05D005567 1.3e-118 430.3 292 77.1
Ciclev10016098m.g Citrus clementina HOM05D004655 ORTHO05D005567 2.1e-118 429.5 294 76.2
Dinv13829 Davidia involucrata HOM05D004655 ORTHO05D005567 2.1e-118 429.5 294 76.9
Duzib132G0437 Durio zibethinus HOM05D004655 ORTHO05D005567 2.1e-118 429.5 293 75.8
Duzib132G0466 Durio zibethinus HOM05D004655 ORTHO05D005567 2.1e-118 429.5 293 75.8
TWI36G0222 Tripterygium wilfordii HOM05D004655 ORTHO05D005567 2.8e-118 429.1 300 76.7
MD17G1085500 Malus domestica HOM05D004655 ORTHO05D005567 3.6e-118 428.7 292 74.3
Manes.13G152400 Manihot esculenta HOM05D004655 ORTHO05D005567 6.2e-118 427.9 292 78.1
CiPaw.04G122300 Carya illinoinensis HOM05D004655 ORTHO05D005567 3.1e-117 425.6 299 75.3
Atru.chr6.3084 Acer truncatum HOM05D004655 ORTHO05D005567 4.0e-117 425.2 295 76.9
Actinidia12466 Actinidia chinensis HOM05D004655 ORTHO05D005567 5.3e-117 424.9 292 74.7
Prupe.3G228700 Prunus persica HOM05D004655 ORTHO05D005567 6.9e-117 424.5 287 75.3
Cfa014528 Carpinus fangiana HOM05D004655 ORTHO05D005567 3.4e-116 422.2 299 76.6
PGR042G1100 Punica granatum HOM05D004655 ORTHO05D005567 4.5e-116 421.8 293 74.4
RcHm_v2.0_Chr2g0161411 Rosa chinensis HOM05D004655 ORTHO05D005567 9.9e-116 420.6 291 74.6
TAR629G1482 Trochodendron aralioides HOM05D004655 ORTHO05D005567 3.8e-115 418.7 292 74.7
Actinidia18535 Actinidia chinensis HOM05D004655 ORTHO05D005567 1.9e-114 416.4 292 73.6
Nn1g03859 Nelumbo nucifera HOM05D004655 ORTHO05D005567 3.2e-114 415.6 293 73.4
FAN14G2207 Fragaria x ananassa HOM05D004655 ORTHO05D005567 7.1e-114 414.5 291 72.5
TWI75G0473 Tripterygium wilfordii HOM05D004655 ORTHO05D005567 7.1e-114 414.5 300 74.7
FAN02G3511 Fragaria x ananassa HOM05D004655 ORTHO05D005567 2.7e-113 412.5 292 72.6
FAN05G4368 Fragaria x ananassa HOM05D004655 ORTHO05D005567 2.7e-113 412.5 292 72.6
TAR627G0814 Trochodendron aralioides HOM05D004655 ORTHO05D005567 2.7e-113 412.5 300 73.3
CiPaw.03G168300 Carya illinoinensis HOM05D004655 ORTHO05D005567 3.5e-113 412.1 292 74.3
FvH4_6g44420 Fragaria vesca HOM05D004655 ORTHO05D005567 3.5e-113 412.1 291 72.2
Glyma.12G200200 Glycine max HOM05D004655 ORTHO05D005567 6.0e-113 411.4 292 74.3
CANSAT64G1156 Cannabis sativa HOM05D004655 ORTHO05D005567 1.3e-112 410.2 292 72.6
Lj3g0013026 Lotus japonicus HOM05D004655 ORTHO05D005567 2.3e-112 409.5 291 73.9
Glyma.13G302100 Glycine max HOM05D004655 ORTHO05D005567 3.0e-112 409.1 292 73.6
Potri.019G117900 Populus trichocarpa HOM05D004655 ORTHO05D005567 3.0e-112 409.1 293 74.1
arahy.Tifrunner.gnm1.ann1.YR7HYJ Arachis hypogaea HOM05D004655 ORTHO05D005567 3.9e-112 408.7 295 73.9
FAN02G1121 Fragaria x ananassa HOM05D004655 ORTHO05D005567 6.7e-112 407.9 292 71.6
arahy.Tifrunner.gnm1.ann1.XZ54ZU Arachis hypogaea HOM05D004655 ORTHO05D005567 3.3e-111 405.6 295 73.6
THA.LOC104804073 Tarenaya hassleriana HOM05D004655 ORTHO05D005567 5.6e-111 404.8 291 74.6
Haze_13070 Corylus avellana HOM05D004655 ORTHO05D005567 9.6e-111 404.1 358 64.2
Lj3g0017119 Lotus japonicus HOM05D004655 ORTHO05D005567 9.6e-111 404.1 284 73.9
Eucgr.A01774 Eucalyptus grandis HOM05D004655 ORTHO05D005567 1.3e-110 403.7 302 70.5
vmacro12257 Vaccinium macrocarpon HOM05D004655 ORTHO05D005567 1.6e-110 403.3 293 73.4
MBI18_g27693_MAGBIO Magnolia biondii HOM05D004655 ORTHO05D005567 2.8e-110 402.5 299 71.9
Psat7g149680 Pisum sativum HOM05D004655 ORTHO05D005567 4.8e-110 401.7 288 74.0
EL10Ac9g20731 Beta vulgaris HOM05D004655 ORTHO05D005567 6.2e-110 401.4 288 74.3
VMungo1080G0396 Vigna mungo HOM05D004655 ORTHO05D005567 6.2e-110 401.4 292 72.3
arahy.Tifrunner.gnm1.ann1.S2JPPU Arachis hypogaea HOM05D004655 ORTHO05D005567 1.1e-109 400.6 299 71.9
A09p58650 Brassica napus HOM05D004655 ORTHO05D005567 1.4e-109 400.2 293 73.4
BraA09t41251Z Brassica rapa HOM05D004655 ORTHO05D005567 1.4e-109 400.2 293 73.4
BcaC07g41186 Brassica carinata HOM05D004655 ORTHO05D005567 1.8e-109 399.8 300 71.3
BolC8t51757H Brassica oleracea HOM05D004655 ORTHO05D005567 1.8e-109 399.8 300 71.3
AUR62037119 Chenopodium quinoa HOM05D004655 ORTHO05D005567 4.0e-109 398.7 291 73.5
Potri.013G148400 Populus trichocarpa HOM05D004655 ORTHO05D005567 4.0e-109 398.7 293 72.4
C08p41940 Brassica napus HOM05D004655 ORTHO05D005567 6.9e-109 397.9 300 71.0
Sp3g34160 Schrenkiella parvula HOM05D004655 ORTHO05D005567 6.9e-109 397.9 299 71.2
arahy.Tifrunner.gnm1.ann1.81TW8H Arachis hypogaea HOM05D004655 ORTHO05D005567 1.2e-108 397.1 299 70.9
AUR62032763 Chenopodium quinoa HOM05D004655 ORTHO05D005567 1.2e-108 397.1 288 74.7
Phvul.005G108600 Phaseolus vulgaris HOM05D004655 ORTHO05D005567 1.5e-108 396.7 292 72.3
TPR.G18073 Trifolium pratense HOM05D004655 ORTHO05D005567 2.6e-108 396.0 295 71.5
CSS0020863 Camellia sinensis var. sinensis HOM05D004655 ORTHO05D005567 3.4e-108 395.6 291 71.1
Medtr4g045980 Medicago truncatula HOM05D004655 ORTHO05D005567 3.4e-108 395.6 294 72.4
MSTRG.14176 Avicennia marina HOM05D004655 ORTHO05D005567 4.5e-108 395.2 291 71.5
Migut.H01014 Erythranthe guttata HOM05D004655 ORTHO05D005567 4.5e-108 395.2 292 71.6
Ah.01g005210 Amaranthus hybridus HOM05D004655 ORTHO05D005567 5.8e-108 394.8 292 71.6
ATR0693G119 Amborella trichopoda HOM05D004655 ORTHO05D005567 7.6e-108 394.4 293 70.3
CSS0004933 Camellia sinensis var. sinensis HOM05D004655 ORTHO05D005567 7.6e-108 394.4 291 70.8
Lalb_Chr01g0005451 Lupinus albus HOM05D004655 ORTHO05D005567 1.7e-107 393.3 286 72.4
Lalb_Chr22g0356311 Lupinus albus HOM05D004655 ORTHO05D005567 1.7e-107 393.3 285 71.6
DCAR_012973 Daucus carota HOM05D004655 ORTHO05D005567 2.2e-107 392.9 297 71.4
BcaB08g34948 Brassica carinata HOM05D004655 ORTHO05D005567 2.9e-107 392.5 302 69.9
Aa31LG8G17800 Aethionema arabicum HOM05D004655 ORTHO05D005567 3.8e-107 392.1 300 71.3
Ca_01544_v3 Cicer arietinum L. HOM05D004655 ORTHO05D005567 8.4e-107 391.0 291 70.8
Hma1.2p1_0565F.1_g179650 Hydrangea macrophylla HOM05D004655 ORTHO05D005567 1.1e-106 390.6 293 72.4
Hma1.2p1_0662F.1_g198360 Hydrangea macrophylla HOM05D004655 ORTHO05D005567 1.1e-106 390.6 291 71.5
Nn1g06795 Nelumbo nucifera HOM05D004655 ORTHO05D005567 1.1e-106 390.6 277 74.0
Nn1g06798 Nelumbo nucifera HOM05D004655 ORTHO05D005567 1.1e-106 390.6 277 74.0
Sopen07g028730 Solanum pennellii HOM05D004655 ORTHO05D005567 1.1e-106 390.6 293 70.3
PGSC0003DMG400018330 Solanum tuberosum HOM05D004655 ORTHO05D005567 1.1e-106 390.6 293 70.6
Thhalv10002049m.g Eutrema salsugineum HOM05D004655 ORTHO05D005567 1.4e-106 390.2 298 71.5
GSVIVG01029990001 Vitis vinifera HOM05D004655 ORTHO05D005567 2.4e-106 389.4 235 83.8
Glyma.06G299100 Glycine max HOM05D004655 ORTHO05D005567 4.2e-106 388.7 283 73.5
Glyma.12G106600 Glycine max HOM05D004655 ORTHO05D005567 4.2e-106 388.7 284 72.2
CARHR111640 Cardamine hirsuta HOM05D004655 ORTHO05D005567 9.3e-106 387.5 289 72.0
Carub.0003s3556 Capsella rubella HOM05D004655 ORTHO05D005567 1.2e-105 387.1 290 72.4
VMungo1127G2245 Vigna mungo HOM05D004655 ORTHO05D005567 1.6e-105 386.7 280 73.2
AL3G54160 Arabidopsis lyrata HOM05D004655 ORTHO05D005567 2.1e-105 386.3 242 79.8
PSO675G0243 Papaver somniferum HOM05D004655 ORTHO05D005567 2.1e-105 386.3 293 68.6
PSO541G1277 Papaver somniferum HOM05D004655 ORTHO05D005567 7.9e-105 384.4 295 67.8
Phvul.011G110700 Phaseolus vulgaris HOM05D004655 ORTHO05D005567 7.9e-105 384.4 280 73.6
Cc05_g06070 Coffea canephora HOM05D004655 ORTHO05D005567 2.3e-104 382.9 304 70.7
Sc12g0002690 Simmondsia chinensis HOM05D004655 ORTHO05D005567 5.1e-104 381.7 282 72.0
TPR.G21652 Trifolium pratense HOM05D004655 ORTHO05D005567 5.1e-104 381.7 256 75.8
AT2G20890 Arabidopsis thaliana HOM05D004655 ORTHO05D005567 6.7e-104 381.3 290 71.4
Sabra19G0118300 Salix brachista HOM05D004655 ORTHO05D005567 1.1e-103 380.6 341 63.0
Sabra19G0135300 Salix brachista HOM05D004655 ORTHO05D005567 1.5e-103 380.2 341 63.0
HanXRQChr06g0171121 Helianthus annuus HOM05D004655 ORTHO05D005567 1.9e-103 379.8 292 70.9
Lsat_1_v5_gn_3_40720 Lactuca sativa HOM05D004655 ORTHO05D005567 9.6e-103 377.5 310 65.2
Psat5g269080 Pisum sativum HOM05D004655 ORTHO05D005567 1.3e-102 377.1 268 73.5
Rhsim06G0153100 Rhododendron simsii HOM05D004655 ORTHO05D005567 4.8e-102 375.2 318 64.8
Ca_20707_v3 Cicer arietinum L. HOM05D004655 ORTHO05D005567 1.4e-101 373.6 271 72.3
Aqoxy1G03905 Aquilegia oxysepala HOM05D004655 ORTHO05D005567 1.8e-101 373.2 291 67.0
Medtr2g089795 Medicago truncatula HOM05D004655 ORTHO05D005567 6.9e-101 371.3 286 68.2
Lj1C737G5 Lonicera japonica HOM05D004655 ORTHO05D005567 1.2e-100 370.5 324 63.6
SGA_v2.0_scaffold70G23458 Striga asiatica HOM05D004655 ORTHO05D005567 1.0e-99 367.5 269 73.6
DCAR_019200 Daucus carota HOM05D004655 ORTHO05D005567 2.9e-99 365.9 227 81.5
HPP92_012362 Vanilla planifolia HOM05D004655 ORTHO05D005567 6.5e-99 364.8 291 66.7
unitig_21.g20001 Utricularia gibba HOM05D004655 ORTHO05D005567 1.4e-98 363.6 308 63.0
SGA_v2.0_scaffold34G13911 Striga asiatica HOM05D004655 ORTHO05D005567 2.5e-98 362.8 351 60.7
ECA246G4617 Erigeron canadensis HOM05D004655 ORTHO05D005567 5.5e-98 361.7 242 76.0
Os07g0558500 Oryza sativa ssp. japonica HOM05D004655 ORTHO05D005567 7.1e-98 361.3 240 77.1
Zm00001eb324100 Zea mays HOM05D004655 ORTHO05D005567 2.5e-95 352.8 288 66.0
Duzib052G1220 Durio zibethinus HOM05D004655 ORTHO05D005567 9.7e-95 350.9 292 65.1
SalBow1G2826 Salvia bowleyana HOM05D004655 ORTHO05D005567 1.6e-94 350.1 224 79.0
SalBow7G2858 Salvia bowleyana HOM05D004655 ORTHO05D005567 2.2e-94 349.7 270 67.8
Sabra13G0119700 Salix brachista HOM05D004655 ORTHO05D005567 3.1e-93 345.9 292 65.8
CAN.G508.2 Capsicum annuum HOM05D004655 ORTHO05D005567 2.0e-92 343.2 221 77.8
Nitab4.5_0000769g0070 Nicotiana tabacum HOM05D004655 ORTHO05D005567 2.2e-91 339.7 292 65.4
Peaxi162Scf00007g02516 Petunia axillaris HOM05D004655 ORTHO05D005567 2.2e-91 339.7 327 60.9
Lj8C118T0 Lonicera japonica HOM05D004655 ORTHO05D005567 1.9e-87 326.6 234 75.6
Duzib248G0290 Durio zibethinus HOM05D004655 ORTHO05D005567 5.7e-87 325.1 197 82.2
FAN09G1462 Fragaria x ananassa HOM05D004655 ORTHO05D005567 6.3e-86 321.6 292 60.6
Nitab4.5_0001019g0090 Nicotiana tabacum HOM05D004655 ORTHO05D005567 1.4e-82 310.5 216 73.6
Pp3c19_17570 Physcomitrium patens HOM05D004655 ORTHO05D005567 5.5e-82 308.5 248 63.3
Sc12g0003940 Simmondsia chinensis HOM05D004655 ORTHO05D005567 1.2e-81 307.4 231 70.1
Pp3c21_14540 Physcomitrium patens HOM05D004655 ORTHO05D005567 3.0e-80 302.8 234 65.8
AagrBONN_evm.TU.Sc2ySwM_344.251 Anthoceros agrestis HOM05D004655 ORTHO05D005567 5.1e-80 302.0 213 71.4
Ah.01g014420 Amaranthus hybridus HOM05D004655 ORTHO05D005567 4.8e-78 295.4 229 69.4
SMO266G0053 Selaginella moellendorffii HOM05D004655 ORTHO05D005567 6.3e-78 295.0 201 73.1
Mapoly0010s0156 Marchantia polymorpha HOM05D004655 ORTHO05D005567 4.1e-77 292.4 237 66.2
Zm00001eb106830 Zea mays HOM05D004655 ORTHO05D005567 5.0e-75 285.4 184 76.1
AUR62037125 Chenopodium quinoa HOM05D001718 ORTHO05D008006 1.9e-74 283.5 260 62.7
AUR62032764 Chenopodium quinoa HOM05D001718 ORTHO05D008006 2.5e-74 283.1 265 61.5
Dinv15502 Davidia involucrata HOM05D004655 ORTHO05D005567 5.3e-69 265.4 186 74.2
Cpa.g.sc34.80 Carica papaya HOM05D004655 ORTHO05D005567 3.6e-65 252.7 197 68.0
PRCOL_00003577 Prasinoderma coloniale HOM05D004655 ORTHO05D005567 1.8e-56 223.8 206 53.9
CBR_g78876 Chara braunii HOM05D004655 ORTHO05D005567 1.2e-55 221.1 286 44.8
CDE05G0433 Ceratophyllum demersum HOM05D004655 ORTHO05D005567 3.1e-53 213.0 180 62.8
Cre13.g562850 Chlamydomonas reinhardtii HOM05D004655 ORTHO05D005567 6.6e-51 205.3 239 49.8
CDE05G0437 Ceratophyllum demersum HOM05D004655 ORTHO05D005567 3.6e-49 199.5 150 68.0
MCO07G428 Micromonas commoda HOM05D004655 ORTHO05D005567 6.6e-43 178.7 245 44.1
SEGI_32441 Sequoiadendron giganteum HOM05D004655 ORTHO05D005567 1.4e-40 171.0 162 59.3
Sed0002097 Sechium edule HOM05D004655 ORTHO05D005567 1.0e-35 154.8 285 41.8
ClCG02G001370 Citrullus lanatus HOM05D004655 ORTHO05D005567 1.9e-26 124.0 70 87.1
Cpa.g.sc34.79 Carica papaya HOM05D004655 ORTHO05D005567 3.7e-22 109.8 67 80.6
VMungo0720G1089 Vigna mungo HOM05D004655 ORTHO05D005567 1.7e-19 100.9 83 66.3
Sabra19G0118700 Salix brachista HOM05D004655 ORTHO05D005567 4.2e-13 79.7 114 43.0
Oeu029438.1 Olea europaea HOM05D004655 ORTHO05D005567 4.6e-12 76.3 47 72.3
Hma1.2p1_0479F.1_g161430 Hydrangea macrophylla HOM05D001315 ORTHO05D001618 2.8e-09 67.0 49 69.4


User provided reference genes

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