Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0025807 Sechium edule HOM05D004236 ORTHO05D004903 2.8e-88 328.6 166 100.0
ClCG05G010730 Citrullus lanatus HOM05D004236 ORTHO05D004903 3.5e-78 295.0 159 93.7
CsaV3_3G017790 Cucumis sativus L. HOM05D004236 ORTHO05D004903 1.7e-77 292.7 161 92.5
Sed0018742 Sechium edule HOM05D004236 ORTHO05D004903 2.8e-75 285.4 159 90.6
Thecc.04G125200 Theobroma cacao HOM05D004236 ORTHO05D004903 3.1e-66 255.4 168 76.2
COL.COLO4_27143 Corchorus olitorius HOM05D004236 ORTHO05D004903 6.8e-66 254.2 168 76.2
Gohir.D11G173300 Gossypium hirsutum HOM05D004236 ORTHO05D004903 8.9e-66 253.8 168 77.4
MD09G1258900 Malus domestica HOM05D004236 ORTHO05D004903 1.5e-65 253.1 159 79.9
Gohir.A11G167000 Gossypium hirsutum HOM05D004236 ORTHO05D004903 2.0e-65 252.7 168 76.8
Gorai.007G185600 Gossypium raimondii HOM05D004236 ORTHO05D004903 2.6e-65 252.3 168 76.8
Cpa.g.sc116.5 Carica papaya HOM05D004236 ORTHO05D004903 1.3e-64 250.0 166 75.3
TWI53G1957 Tripterygium wilfordii HOM05D004236 ORTHO05D004903 3.7e-64 248.4 167 76.0
Nn4g24056 Nelumbo nucifera HOM05D004236 ORTHO05D004903 6.4e-64 247.7 169 74.0
Potri.015G062400 Populus trichocarpa HOM05D004236 ORTHO05D004903 1.1e-63 246.9 161 79.5
Dinv23330 Davidia involucrata HOM05D004236 ORTHO05D004903 1.9e-63 246.1 161 77.0
Eucgr.J01534 Eucalyptus grandis HOM05D004236 ORTHO05D004903 2.4e-63 245.7 166 71.1
VMungo1383G0222 Vigna mungo HOM05D004236 ORTHO05D004903 4.1e-63 245.0 167 73.7
Cc07_g08360 Coffea canephora HOM05D004236 ORTHO05D004903 5.4e-63 244.6 168 73.2
Manes.01G114300 Manihot esculenta HOM05D004236 ORTHO05D004903 7.1e-63 244.2 166 72.9
RcHm_v2.0_Chr3g0493661 Rosa chinensis HOM05D004236 ORTHO05D004903 7.1e-63 244.2 166 73.5
ECA232G1241 Erigeron canadensis HOM05D004236 ORTHO05D004903 9.2e-63 243.8 166 71.7
FvH4_1g29040 Fragaria vesca HOM05D004236 ORTHO05D004903 9.2e-63 243.8 166 74.1
Phvul.008G009300 Phaseolus vulgaris HOM05D004236 ORTHO05D004903 2.1e-62 242.7 167 73.1
DCAR_010720 Daucus carota HOM05D004236 ORTHO05D004903 3.5e-62 241.9 161 74.5
Prupe.3G150900 Prunus persica HOM05D004236 ORTHO05D004903 3.5e-62 241.9 166 75.9
Solyc02g091190.4 Solanum lycopersicum HOM05D004236 ORTHO05D004903 3.5e-62 241.9 166 72.3
Sopen02g035820 Solanum pennellii HOM05D004236 ORTHO05D004903 3.5e-62 241.9 166 72.3
FAN19G1079 Fragaria x ananassa HOM05D004236 ORTHO05D004903 6.0e-62 241.1 166 73.5
CSS0010670 Camellia sinensis var. sinensis HOM05D004236 ORTHO05D004903 1.0e-61 240.4 168 72.6
Duzib138G1869 Durio zibethinus HOM05D004236 ORTHO05D004903 1.0e-61 240.4 168 72.0
FAN23G2326 Fragaria x ananassa HOM05D004236 ORTHO05D004903 1.0e-61 240.4 166 72.9
Migut.H00256 Erythranthe guttata HOM05D004236 ORTHO05D004903 1.3e-61 240.0 168 72.0
Lj2A437T35 Lonicera japonica HOM05D004236 ORTHO05D004903 1.3e-61 240.0 166 72.3
Medtr7g082910 Medicago truncatula HOM05D004236 ORTHO05D004903 1.3e-61 240.0 168 73.2
Peaxi162Scf00104g01815 Petunia axillaris HOM05D004236 ORTHO05D004903 1.3e-61 240.0 161 74.5
PGSC0003DMG400030596 Solanum tuberosum HOM05D004236 ORTHO05D004903 1.3e-61 240.0 167 71.9
SGA_v2.0_scaffold202G41491 Striga asiatica HOM05D004236 ORTHO05D004903 1.3e-61 240.0 166 73.5
Atru.chr1.1563 Acer truncatum HOM05D004236 ORTHO05D004903 1.7e-61 239.6 168 73.2
Aqoxy3G00154 Aquilegia oxysepala HOM05D004236 ORTHO05D004903 1.7e-61 239.6 161 72.7
arahy.Tifrunner.gnm1.ann1.LVD2NH Arachis hypogaea HOM05D004236 ORTHO05D004903 1.7e-61 239.6 168 72.6
CANSAT80G2204 Cannabis sativa HOM05D004236 ORTHO05D004903 1.7e-61 239.6 169 71.6
Glyma.18G292800 Glycine max HOM05D004236 ORTHO05D004903 1.7e-61 239.6 168 72.6
Lalb_Chr04g0257721 Lupinus albus HOM05D004236 ORTHO05D004903 1.7e-61 239.6 167 71.9
PGR042G2451 Punica granatum HOM05D004236 ORTHO05D004903 1.7e-61 239.6 161 75.8
CSS0025273 Camellia sinensis var. sinensis HOM05D004236 ORTHO05D004903 2.3e-61 239.2 168 72.0
GSVIVG01030921001 Vitis vinifera HOM05D004236 ORTHO05D004903 2.3e-61 239.2 168 69.6
arahy.Tifrunner.gnm1.ann1.UY7CFX Arachis hypogaea HOM05D004236 ORTHO05D004903 3.0e-61 238.8 168 72.6
A07p33520 Brassica napus HOM05D004236 ORTHO05D004903 3.0e-61 238.8 159 70.4
CAN.G11.35 Capsicum annuum HOM05D004236 ORTHO05D004903 3.0e-61 238.8 159 74.2
DCAR_021451 Daucus carota HOM05D004236 ORTHO05D004903 3.9e-61 238.4 162 73.5
Lj4A180T59 Lonicera japonica HOM05D004236 ORTHO05D004903 3.9e-61 238.4 159 75.5
Nitab4.5_0005700g0030 Nicotiana tabacum HOM05D004236 ORTHO05D004903 3.9e-61 238.4 168 70.2
BraA07t30978Z Brassica rapa HOM05D004236 ORTHO05D004903 5.1e-61 238.0 159 70.4
Peaxi162Scf00803g00219 Petunia axillaris HOM05D004236 ORTHO05D004903 5.1e-61 238.0 167 71.9
TAR629G1587 Trochodendron aralioides HOM05D004236 ORTHO05D004903 5.1e-61 238.0 160 76.9
Gohir.A07G075300 Gossypium hirsutum HOM05D004236 ORTHO05D004903 6.6e-61 237.7 169 69.8
Lj1g0012263 Lotus japonicus HOM05D004236 ORTHO05D004903 6.6e-61 237.7 166 74.1
Rhsim08G0084400 Rhododendron simsii HOM05D004236 ORTHO05D004903 6.6e-61 237.7 168 71.4
C06p39930 Brassica napus HOM05D004236 ORTHO05D004903 1.1e-60 236.9 159 70.4
PGSC0003DMG400016698 Solanum tuberosum HOM05D004236 ORTHO05D004903 1.1e-60 236.9 159 74.2
MELO3C020314.2 Cucumis melo HOM05D004236 ORTHO05D004903 1.5e-60 236.5 196 69.4
Gohir.D07G079800 Gossypium hirsutum HOM05D004236 ORTHO05D004903 1.9e-60 236.1 169 69.2
HanXRQChr09g0262441 Helianthus annuus HOM05D004236 ORTHO05D004903 1.9e-60 236.1 168 69.6
Hma1.2p1_0500F.1_g166960 Hydrangea macrophylla HOM05D004236 ORTHO05D004903 1.9e-60 236.1 167 71.9
CAN.G625.68 Capsicum annuum HOM05D004236 ORTHO05D004903 2.5e-60 235.7 168 69.6
Ciclev10012115m.g Citrus clementina HOM05D004236 ORTHO05D004903 2.5e-60 235.7 166 72.9
Sabra15G0087400 Salix brachista HOM05D004236 ORTHO05D004903 3.3e-60 235.3 164 75.6
Duzib133G1178 Durio zibethinus HOM05D004236 ORTHO05D004903 5.6e-60 234.6 150 78.7
TAR622G0693 Trochodendron aralioides HOM05D004236 ORTHO05D004903 5.6e-60 234.6 168 70.2
CSS0029696 Camellia sinensis var. sinensis HOM05D004236 ORTHO05D004903 7.3e-60 234.2 169 69.8
Carub.0002s1288 Capsella rubella HOM05D004236 ORTHO05D004903 7.3e-60 234.2 168 69.0
BcaC08g46105 Brassica carinata HOM05D004236 ORTHO05D004903 9.6e-60 233.8 162 69.1
Ca_08100_v3 Cicer arietinum L. HOM05D004236 ORTHO05D004903 9.6e-60 233.8 166 72.9
Gorai.001G084600 Gossypium raimondii HOM05D004236 ORTHO05D004903 9.6e-60 233.8 169 68.6
Ah.16g101430 Amaranthus hybridus HOM05D004236 ORTHO05D004903 1.2e-59 233.4 169 69.2
SalBow3G2011 Salvia bowleyana HOM05D004236 ORTHO05D004903 1.2e-59 233.4 166 69.9
SalBow3G4331 Salvia bowleyana HOM05D004236 ORTHO05D004903 1.2e-59 233.4 166 69.9
BcaB03g15254 Brassica carinata HOM05D004236 ORTHO05D004903 1.6e-59 233.0 162 69.8
Sp5g21620 Schrenkiella parvula HOM05D004236 ORTHO05D004903 1.6e-59 233.0 170 67.1
Hund13695 Selenicereus undatus HOM05D004236 ORTHO05D004903 1.6e-59 233.0 164 71.3
THA.LOC104805594 Tarenaya hassleriana HOM05D004236 ORTHO05D004903 1.6e-59 233.0 165 70.9
Lsat_1_v5_gn_4_156001 Lactuca sativa HOM05D004236 ORTHO05D004903 2.1e-59 232.6 167 72.5
TPR.G28393 Trifolium pratense HOM05D004236 ORTHO05D004903 2.1e-59 232.6 167 70.7
BolC6t39081H Brassica oleracea HOM05D004236 ORTHO05D004903 2.8e-59 232.3 162 69.1
MBI16_g21181_MAGBIO Magnolia biondii HOM05D004236 ORTHO05D004903 2.8e-59 232.3 167 70.1
Nn3g18026 Nelumbo nucifera HOM05D004236 ORTHO05D004903 2.8e-59 232.3 159 73.6
THA.LOC104822473 Tarenaya hassleriana HOM05D004236 ORTHO05D004903 2.8e-59 232.3 159 73.6
Glyma.02G090500 Glycine max HOM05D004236 ORTHO05D004903 3.6e-59 231.9 167 70.7
CiPaw.04G044800 Carya illinoinensis HOM05D004236 ORTHO05D004903 6.2e-59 231.1 167 70.1
Rhsim10G0077900 Rhododendron simsii HOM05D004236 ORTHO05D004903 6.2e-59 231.1 167 70.7
unitig_899.g14517 Utricularia gibba HOM05D004236 ORTHO05D004903 6.2e-59 231.1 166 71.1
ATR0326G065 Amborella trichopoda HOM05D004236 ORTHO05D004903 8.1e-59 230.7 165 70.9
PSO017G0657 Papaver somniferum HOM05D004236 ORTHO05D004903 8.1e-59 230.7 160 72.5
Psat3g096800 Pisum sativum HOM05D004236 ORTHO05D004903 8.1e-59 230.7 169 72.2
AL2G24640 Arabidopsis lyrata HOM05D004236 ORTHO05D004903 1.1e-58 230.3 170 66.5
CiPaw.03G066200 Carya illinoinensis HOM05D004236 ORTHO05D004903 1.1e-58 230.3 167 70.1
CARHR058730 Cardamine hirsuta HOM05D004236 ORTHO05D004903 1.8e-58 229.6 166 68.1
AT1G66680 Arabidopsis thaliana HOM05D004236 ORTHO05D004903 2.4e-58 229.2 169 66.9
Nitab4.5_0000901g0060 Nicotiana tabacum HOM05D004236 ORTHO05D004903 3.1e-58 228.8 154 74.7
Thhalv10018777m.g Eutrema salsugineum HOM05D004236 ORTHO05D004903 4.0e-58 228.4 168 66.7
Lalb_Chr17g0336021 Lupinus albus HOM05D004236 ORTHO05D004903 5.2e-58 228.0 164 70.1
PSO478G1960 Papaver somniferum HOM05D004236 ORTHO05D004903 5.2e-58 228.0 161 72.0
AUR62023213 Chenopodium quinoa HOM05D004236 ORTHO05D004903 1.5e-57 226.5 159 71.7
AUR62023259 Chenopodium quinoa HOM05D004236 ORTHO05D004903 1.5e-57 226.5 159 71.7
MD17G1253400 Malus domestica HOM05D004236 ORTHO05D004903 1.5e-57 226.5 166 71.1
EL10Ac2g04514 Beta vulgaris HOM05D004236 ORTHO05D004903 5.8e-57 224.6 164 68.9
Lsat_1_v5_gn_2_81141 Lactuca sativa HOM05D004236 ORTHO05D004903 5.8e-57 224.6 155 73.5
FAN26G2772 Fragaria x ananassa HOM05D004236 ORTHO05D004903 2.2e-56 222.6 202 59.9
vmacro05491 Vaccinium macrocarpon HOM05D004236 ORTHO05D004903 6.4e-56 221.1 194 60.3
Aa31LG2G3180 Aethionema arabicum HOM05D004236 ORTHO05D004903 8.4e-56 220.7 166 67.5
Lsat_1_v5_gn_4_15520 Lactuca sativa HOM05D004236 ORTHO05D004903 2.4e-55 219.2 162 69.1
Oeu047429.3 Olea europaea HOM05D004236 ORTHO05D004903 1.6e-54 216.5 158 69.0
TWI77G0072 Tripterygium wilfordii HOM05D004236 ORTHO05D004903 1.7e-53 213.0 167 65.3
ECA238G4753 Erigeron canadensis HOM05D004236 ORTHO05D004903 5.1e-53 211.5 163 65.6
Zm00001eb156450 Zea mays HOM05D004236 ORTHO05D004903 2.1e-51 206.1 158 64.6
Mapoly0105s0009 Marchantia polymorpha HOM05D004236 ORTHO05D004903 3.4e-49 198.7 167 58.1
HPP92_023113 Vanilla planifolia HOM05D004236 ORTHO05D004903 3.4e-49 198.7 158 64.6
GSVIVG01011790001 Vitis vinifera HOM05D004236 ORTHO05D004903 3.4e-49 198.7 168 63.7
MBI10_g41074_MAGBIO Magnolia biondii HOM05D004236 ORTHO05D004903 1.4e-47 193.4 165 62.4
Pp3c15_25630 Physcomitrium patens HOM05D004236 ORTHO05D004903 1.9e-47 193.0 161 58.4
Nn1g02732 Nelumbo nucifera HOM05D004236 ORTHO05D004903 4.6e-46 188.3 108 82.4
Os01g0121100 Oryza sativa ssp. japonica HOM05D004236 ORTHO05D004903 6.0e-46 188.0 155 61.9
CDE04G0933 Ceratophyllum demersum HOM05D004236 ORTHO05D004903 2.3e-45 186.0 142 63.4
Nitab4.5_0000625g0030 Nicotiana tabacum HOM05D004236 ORTHO05D004903 6.6e-45 184.5 173 58.4
SMO340G0155 Selaginella moellendorffii HOM05D004236 ORTHO05D004903 1.2e-41 173.7 166 53.0
Oeu038787.1 Olea europaea HOM05D004236 ORTHO05D004903 3.3e-36 155.6 111 71.2
Dinv14861 Davidia involucrata HOM05D004236 ORTHO05D004903 1.2e-33 147.1 99 72.7
Actinidia17648 Actinidia chinensis HOM05D004236 ORTHO05D004903 1.5e-33 146.7 92 73.9
CBR_g26148 Chara braunii HOM05D004236 ORTHO05D004903 2.0e-33 146.4 220 37.7
Sc11g0008520 Simmondsia chinensis HOM05D004236 ORTHO05D004903 1.1e-31 140.6 86 77.9
Dinv33978 Davidia involucrata HOM05D004236 ORTHO05D004903 2.1e-27 126.3 75 82.7
SHI07804 Sapria himalayana HOM05D004236 ORTHO05D004903 3.1e-26 122.5 216 38.0
SEGI_21262 Sequoiadendron giganteum HOM05D004236 ORTHO05D004903 7.9e-22 107.8 99 54.5
BcaC03g14751 Brassica carinata HOM05D004236 ORTHO05D032721 1.2e-17 94.0 61 68.9
Os01g0686400 Oryza sativa ssp. japonica HOM05D004236 ORTHO05D004903 1.1e-15 87.4 83 55.4
Hma1.2p1_1189F.1_g265360 Hydrangea macrophylla HOM05D004236 ORTHO05D004903 3.4e-09 65.9 59 57.6
SEGI_26756 Sequoiadendron giganteum HOM05D004236 ORTHO05D004903 4.5e-09 65.5 48 62.5
Cfa026028 Carpinus fangiana HOM05D004236 ORTHO05D004903 5.9e-09 65.1 174 32.2
Nitab4.5_0002456g0050 Nicotiana tabacum HOM05D004236 ORTHO05D004903 5.0e-08 62.0 41 68.3
BraA02t06426Z Brassica rapa HOM05D004236 ORTHO05D004903 1.1e-07 60.8 41 61.0
Hma1.2p1_0027F.1_g017210 Hydrangea macrophylla HOM05D001472 ORTHO05D004903 1.1e-07 60.8 34 82.4
SEGI_28739 Sequoiadendron giganteum HOM05D004236 ORTHO05D004903 7.2e-07 58.2 34 76.5
Hma1.2p1_0071F.1_g038110 Hydrangea macrophylla HOM05D004236 ORTHO05D004903 9.4e-07 57.8 34 76.5
Potri.012G068600 Populus trichocarpa HOM05D004236 ORTHO05D004903 2.1e-06 56.6 33 78.8


User provided reference genes

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