Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0025787 Sechium edule HOM05D005488 ORTHO05D006568 3.2e-72 275.0 141 100.0
ClCG05G002900 Citrullus lanatus HOM05D005488 ORTHO05D006568 2.0e-58 229.2 141 83.7
MELO3C006268.2 Cucumis melo HOM05D005488 ORTHO05D006568 7.6e-58 227.3 142 83.1
CsaV3_3G010440 Cucumis sativus L. HOM05D005488 ORTHO05D006568 1.2e-55 219.9 142 80.3
CiPaw.14G016900 Carya illinoinensis HOM05D005488 ORTHO05D006568 1.9e-48 196.1 139 72.7
Cfa011024 Carpinus fangiana HOM05D005488 ORTHO05D006568 5.5e-48 194.5 139 72.7
TWI23G0236 Tripterygium wilfordii HOM05D005488 ORTHO05D006568 9.3e-48 193.7 142 75.4
CiPaw.13G022100 Carya illinoinensis HOM05D005488 ORTHO05D006568 7.9e-47 190.7 139 71.9
Haze_02901 Corylus avellana HOM05D005488 ORTHO05D006568 7.9e-47 190.7 136 72.1
Oeu012019.1 Olea europaea HOM05D002442 ORTHO05D006568 2.3e-46 189.1 142 71.1
Potri.014G044300 Populus trichocarpa HOM05D005488 ORTHO05D006568 1.1e-45 186.8 141 68.8
Manes.05G058400 Manihot esculenta HOM05D005488 ORTHO05D006568 1.9e-45 186.0 140 71.4
Eucgr.D01184 Eucalyptus grandis HOM05D005488 ORTHO05D006568 1.3e-44 183.3 140 71.4
Oeu034855.1 Olea europaea HOM05D005488 ORTHO05D006568 2.1e-44 182.6 140 70.7
Prupe.2G116500 Prunus persica HOM05D005488 ORTHO05D006568 2.8e-44 182.2 139 69.1
RcHm_v2.0_Chr1g0344251 Rosa chinensis HOM05D005488 ORTHO05D006568 3.7e-44 181.8 139 67.6
MD07G1091300 Malus domestica HOM05D005488 ORTHO05D006568 4.8e-44 181.4 139 65.5
PGSC0003DMG400001718 Solanum tuberosum HOM05D005488 ORTHO05D006568 4.8e-44 181.4 140 69.3
Sc26g0001760 Simmondsia chinensis HOM05D005488 ORTHO05D006568 6.2e-44 181.0 140 70.0
Solyc01g088610.4 Solanum lycopersicum HOM05D005488 ORTHO05D006568 6.2e-44 181.0 142 67.6
TWI14G1396 Tripterygium wilfordii HOM05D005488 ORTHO05D006568 6.2e-44 181.0 140 71.4
PGR042G2970 Punica granatum HOM05D005488 ORTHO05D006568 1.1e-43 180.3 140 70.7
GSVIVG01018352001 Vitis vinifera HOM05D005488 ORTHO05D006568 1.4e-43 179.9 140 68.6
Sopen01g035460 Solanum pennellii HOM05D005488 ORTHO05D006568 2.4e-43 179.1 140 67.9
Aa31LG1G26190 Aethionema arabicum HOM05D005488 ORTHO05D006568 4.0e-43 178.3 144 64.6
CSS0036750 Camellia sinensis var. sinensis HOM05D005488 ORTHO05D006568 5.3e-43 177.9 135 71.1
Actinidia21613 Actinidia chinensis HOM05D005488 ORTHO05D006568 6.9e-43 177.6 141 67.4
MD02G1223400 Malus domestica HOM05D005488 ORTHO05D006568 9.0e-43 177.2 139 65.5
AUR62023368 Chenopodium quinoa HOM05D005488 ORTHO05D006568 1.2e-42 176.8 144 68.1
Nitab4.5_0004088g0020 Nicotiana tabacum HOM05D005488 ORTHO05D006568 1.5e-42 176.4 140 67.9
MSTRG.17108 Avicennia marina HOM05D005488 ORTHO05D006568 2.0e-42 176.0 141 65.2
AL5G42420 Arabidopsis lyrata HOM05D005488 ORTHO05D006568 2.6e-42 175.6 140 64.3
AUR62013788 Chenopodium quinoa HOM05D005488 ORTHO05D006568 2.6e-42 175.6 141 67.4
Nitab4.5_0005064g0040 Nicotiana tabacum HOM05D005488 ORTHO05D006568 2.6e-42 175.6 140 67.9
Lj3g0015162 Lotus japonicus HOM05D005488 ORTHO05D006568 3.4e-42 175.3 141 65.2
Atru.chr5.75 Acer truncatum HOM05D005488 ORTHO05D006568 4.5e-42 174.9 139 64.0
Lsat_1_v5_gn_4_38520 Lactuca sativa HOM05D005488 ORTHO05D006568 4.5e-42 174.9 141 66.7
Nn6g33696 Nelumbo nucifera HOM05D005488 ORTHO05D006568 5.8e-42 174.5 139 66.2
CAN.G756.18 Capsicum annuum HOM05D005488 ORTHO05D006568 7.6e-42 174.1 140 67.1
THA.LOC104827584 Tarenaya hassleriana HOM05D005488 ORTHO05D006568 7.6e-42 174.1 142 63.4
CANSAT25G0013 Cannabis sativa HOM05D005488 ORTHO05D006568 1.3e-41 173.3 140 63.6
FvH4_7g08830 Fragaria vesca HOM05D005488 ORTHO05D006568 1.3e-41 173.3 139 64.0
FAN06G3564 Fragaria x ananassa HOM05D005488 ORTHO05D006568 1.3e-41 173.3 139 64.0
Glyma.03G103600 Glycine max HOM05D005488 ORTHO05D006568 1.3e-41 173.3 139 66.9
Carub.0005s2695 Capsella rubella HOM05D005488 ORTHO05D006568 1.7e-41 172.9 140 65.7
COL.COLO4_12353 Corchorus olitorius HOM05D005488 ORTHO05D006568 1.7e-41 172.9 140 67.9
SalBow5G2779 Salvia bowleyana HOM05D005488 ORTHO05D006568 1.7e-41 172.9 139 64.7
ClCG06G000860 Citrullus lanatus HOM05D005488 ORTHO05D006568 2.2e-41 172.6 139 69.8
AT3G60210 Arabidopsis thaliana HOM05D005488 ORTHO05D006568 3.8e-41 171.8 143 63.6
Phvul.010G041700 Phaseolus vulgaris HOM05D005488 ORTHO05D006568 3.8e-41 171.8 139 66.2
Atru.chr5.44 Acer truncatum HOM05D005488 ORTHO05D006568 4.9e-41 171.4 139 62.6
FAN10G0732 Fragaria x ananassa HOM05D005488 ORTHO05D006568 4.9e-41 171.4 139 64.0
Hund17125 Selenicereus undatus HOM05D005488 ORTHO05D006568 4.9e-41 171.4 135 65.2
EL10Ac1g00715 Beta vulgaris HOM05D005488 ORTHO05D006568 6.5e-41 171.0 141 63.8
Thecc.01G402400 Theobroma cacao HOM05D005488 ORTHO05D006568 6.5e-41 171.0 140 66.4
Cc02_g25610 Coffea canephora HOM05D005488 ORTHO05D006568 8.4e-41 170.6 140 65.0
DCAR_025027 Daucus carota HOM05D005488 ORTHO05D006568 8.4e-41 170.6 139 63.3
Gohir.D08G161700 Gossypium hirsutum HOM05D005488 ORTHO05D006568 8.4e-41 170.6 140 66.4
HanXRQChr16g0522961 Helianthus annuus HOM05D005488 ORTHO05D006568 8.4e-41 170.6 143 65.7
FAN01G0908 Fragaria x ananassa HOM05D005488 ORTHO05D006568 1.1e-40 170.2 139 63.3
FAN03G1834 Fragaria x ananassa HOM05D005488 ORTHO05D006568 1.1e-40 170.2 139 64.0
PSO063G2958 Papaver somniferum HOM05D005488 ORTHO05D006568 1.1e-40 170.2 140 65.7
CSS0010758 Camellia sinensis var. sinensis HOM05D005488 ORTHO05D006568 1.4e-40 169.9 141 63.8
Gorai.004G168100 Gossypium raimondii HOM05D005488 ORTHO05D006568 1.4e-40 169.9 140 65.7
Lalb_Chr03g0040501 Lupinus albus HOM05D005488 ORTHO05D006568 1.4e-40 169.9 143 65.0
unitig_26.g8858 Utricularia gibba HOM05D005488 ORTHO05D006568 1.9e-40 169.5 140 61.4
FAN10G4236 Fragaria x ananassa HOM05D005488 ORTHO05D006568 2.5e-40 169.1 139 63.3
Gohir.A08G140700 Gossypium hirsutum HOM05D005488 ORTHO05D006568 2.5e-40 169.1 139 66.9
Aqoxy3G02564 Aquilegia oxysepala HOM05D005488 ORTHO05D006568 5.5e-40 167.9 144 62.5
AL4G43700 Arabidopsis lyrata HOM05D005488 ORTHO05D006568 5.5e-40 167.9 142 60.6
Medtr8g009280 Medicago truncatula HOM05D005488 ORTHO05D006568 5.5e-40 167.9 140 64.3
Lalb_Chr19g0126481 Lupinus albus HOM05D005488 ORTHO05D006568 7.1e-40 167.5 140 63.6
PSO782G2409 Papaver somniferum HOM05D005488 ORTHO05D006568 7.1e-40 167.5 140 65.7
Cpa.g.sc52.71 Carica papaya HOM05D005488 ORTHO05D006568 9.3e-40 167.2 127 70.9
MELO3C022455.2 Cucumis melo HOM05D005488 ORTHO05D006568 9.3e-40 167.2 158 62.7
arahy.Tifrunner.gnm1.ann1.LT98XL Arachis hypogaea HOM05D005488 ORTHO05D006568 1.2e-39 166.8 140 65.0
ECA234G4156 Erigeron canadensis HOM05D005488 ORTHO05D006568 1.6e-39 166.4 144 63.9
CsaV3_6G006710 Cucumis sativus L. HOM05D005488 ORTHO05D001261 2.1e-39 166.0 130 70.0
CSS0012976 Camellia sinensis var. sinensis HOM05D005488 ORTHO05D006568 2.7e-39 165.6 143 62.9
Ca_23141_v3 Cicer arietinum L. HOM05D005488 ORTHO05D006568 2.7e-39 165.6 139 60.4
arahy.Tifrunner.gnm1.ann1.L23YUH Arachis hypogaea HOM05D005488 ORTHO05D006568 3.5e-39 165.2 140 64.3
Duzib138G1174 Durio zibethinus HOM05D005488 ORTHO05D006568 3.5e-39 165.2 140 65.7
Thhalv10001677m.g Eutrema salsugineum HOM05D005488 ORTHO05D006568 1.0e-38 163.7 142 59.9
Peaxi162Scf00745g00015 Petunia axillaris HOM05D005488 ORTHO05D006568 1.0e-38 163.7 133 63.9
SGA_v2.0_scaffold52G19266 Striga asiatica HOM05D005488 ORTHO05D006568 1.0e-38 163.7 140 64.3
Carub.0004s2720 Capsella rubella HOM05D005488 ORTHO05D006568 1.8e-38 162.9 141 59.6
VMungo0331G0633 Vigna mungo HOM05D005488 ORTHO05D006568 3.0e-38 162.2 141 64.5
Sed0000336 Sechium edule HOM05D005488 ORTHO05D006568 5.1e-38 161.4 139 66.2
AT2G44650 Arabidopsis thaliana HOM05D005488 ORTHO05D006568 6.7e-38 161.0 141 60.3
Psat0s4427g0080 Pisum sativum HOM05D005488 ORTHO05D006568 1.1e-37 160.2 139 60.4
Sp4g26730 Schrenkiella parvula HOM05D005488 ORTHO05D006568 1.1e-37 160.2 142 57.0
Ciclev10022799m.g Citrus clementina HOM05D005488 ORTHO05D006568 2.5e-37 159.1 139 59.0
Migut.N01716 Erythranthe guttata HOM05D005488 ORTHO05D006568 2.5e-37 159.1 141 61.0
BraA04t18803Z Brassica rapa HOM05D005488 ORTHO05D006568 5.7e-37 157.9 141 57.4
Migut.B01488 Erythranthe guttata HOM05D005488 ORTHO05D006568 5.7e-37 157.9 140 61.4
BcaB02g08840 Brassica carinata HOM05D005488 ORTHO05D006568 7.4e-37 157.5 141 56.7
BraA05t19455Z Brassica rapa HOM05D005488 ORTHO05D006568 7.4e-37 157.5 140 57.9
BolC4t28620H Brassica oleracea HOM05D005488 ORTHO05D006568 9.6e-37 157.1 140 57.9
BcaC02g12287 Brassica carinata HOM05D005488 ORTHO05D006568 1.3e-36 156.8 140 56.4
C04p05600 Brassica napus HOM05D005488 ORTHO05D006568 1.3e-36 156.8 140 56.4
BolC4t22190H Brassica oleracea HOM05D005488 ORTHO05D006568 1.3e-36 156.8 140 56.4
CARHR139860 Cardamine hirsuta HOM05D005488 ORTHO05D006568 1.6e-36 156.4 142 59.2
BcaC02g07105 Brassica carinata HOM05D005488 ORTHO05D006568 2.8e-36 155.6 140 57.1
A05p04790 Brassica napus HOM05D005488 ORTHO05D006568 3.7e-36 155.2 140 56.4
vmacro21078 Vaccinium macrocarpon HOM05D005488 ORTHO05D006568 3.7e-36 155.2 171 52.6
ATR0665G403 Amborella trichopoda HOM05D005488 ORTHO05D006568 5.3e-35 151.4 108 70.4
Zm00001eb024030 Zea mays HOM05D005488 ORTHO05D006568 1.2e-34 150.2 128 64.1
BcaB06g29391 Brassica carinata HOM05D005488 ORTHO05D006568 1.5e-34 149.8 132 56.1
Os10g0566700 Oryza sativa ssp. japonica HOM05D005488 ORTHO05D006568 1.5e-34 149.8 102 71.6
CDE12G0168 Ceratophyllum demersum HOM05D005488 ORTHO05D006568 2.0e-34 149.4 108 68.5
Potri.002G135700 Populus trichocarpa HOM05D005488 ORTHO05D006568 2.0e-34 149.4 90 81.1
Zm00001eb390720 Zea mays HOM05D005488 ORTHO05D006568 2.6e-34 149.1 122 63.9
CDE04G3246 Ceratophyllum demersum HOM05D005488 ORTHO05D006568 7.6e-34 147.5 145 56.6
HPP92_025708 Vanilla planifolia HOM05D005488 ORTHO05D006568 7.6e-34 147.5 91 80.2
TPR.G17350 Trifolium pratense HOM05D005488 ORTHO05D006568 1.3e-33 146.7 109 67.0
unitig_750.g28406 Utricularia gibba HOM05D005488 ORTHO05D006568 1.9e-32 142.9 142 56.3
A04p33420 Brassica napus HOM05D005488 ORTHO05D006568 2.5e-32 142.5 145 53.1
Dinv44023 Davidia involucrata HOM05D005488 ORTHO05D006568 5.5e-32 141.4 92 76.1
Rhsim01G0143400 Rhododendron simsii HOM05D005488 ORTHO05D006568 1.6e-31 139.8 128 62.5
SEGI_24977 Sequoiadendron giganteum HOM05D005488 ORTHO05D006568 1.6e-31 139.8 133 54.1
C04p71170 Brassica napus HOM05D005488 ORTHO05D006568 2.1e-31 139.4 146 53.4
Sabra02G0105500 Salix brachista HOM05D005488 ORTHO05D006568 4.6e-31 138.3 211 43.6
AagrBONN_evm.TU.Sc2ySwM_117.3656 Anthoceros agrestis HOM05D005488 ORTHO05D006568 2.5e-29 132.5 108 61.1
SMO244G0054 Selaginella moellendorffii HOM05D005488 ORTHO05D006568 2.5e-29 132.5 91 68.1
Sabra14G0032200 Salix brachista HOM05D005488 ORTHO05D006568 9.1e-27 124.0 146 50.0
QL04p026246 Quercus lobata HOM05D005488 ORTHO05D006568 4.5e-26 121.7 72 80.6
Mapoly0181s0002 Marchantia polymorpha HOM05D005488 ORTHO05D006568 1.1e-24 117.1 112 57.1
Duzib133G1397 Durio zibethinus HOM05D005488 ORTHO05D006568 7.2e-24 114.4 107 58.9
Pp3c2_19170 Physcomitrium patens HOM05D005488 ORTHO05D006568 9.4e-24 114.0 140 45.7
Zm00001eb071630 Zea mays HOM05D005488 ORTHO05D006568 1.6e-23 113.2 128 53.9
Dinv43589 Davidia involucrata HOM05D005488 ORTHO05D006568 2.1e-23 112.8 90 68.9
Pp3c1_20880 Physcomitrium patens HOM05D005488 ORTHO05D006568 7.9e-23 110.9 138 44.2
MD13G1240800 Malus domestica HOM05D005488 ORTHO05D006568 6.3e-20 101.3 88 58.0
Glyma.07G120400 Glycine max HOM05D005488 ORTHO05D006568 1.1e-19 100.5 88 62.5
Gohir.D07G176200 Gossypium hirsutum HOM05D005488 ORTHO05D006568 1.5e-18 96.7 76 63.2
Phvul.006G055900 Phaseolus vulgaris HOM05D005488 ORTHO05D006568 2.7e-15 85.9 88 58.0
Gorai.007G266500 Gossypium raimondii HOM05D005488 ORTHO05D006568 3.6e-15 85.5 67 64.2
QL04p026254 Quercus lobata HOM05D005488 ORTHO05D006568 2.4e-11 72.8 69 55.1
Rhsim03G0098500 Rhododendron simsii HOM05D005488 ORTHO05D006568 3.5e-10 68.9 40 82.5
AagrBONN_evm.TU.Sc2ySwM_362.1594 Anthoceros agrestis HOM05D002686 ORTHO05D003222 1.0e-06 57.4 95 38.9
THA.LOC104799611 Tarenaya hassleriana HOM05D002686 ORTHO05D003222 1.8e-06 56.6 93 36.6
Ca_02236_v3 Cicer arietinum L. HOM05D002686 ORTHO05D003222 6.7e-06 54.7 124 34.7
MD00G1150500 Malus domestica HOM05D005488 ORTHO05D006568 6.7e-06 54.7 39 66.7
SEGI_38857 Sequoiadendron giganteum HOM05D002686 ORTHO05D003222 6.7e-06 54.7 134 35.1


User provided reference genes

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