Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0025782 Sechium edule HOM05D004640 ORTHO05D005489 0.0e+00 1093.6 591 100.0
CsaV3_3G019120 Cucumis sativus L. HOM05D004640 ORTHO05D005489 1.3e-289 999.2 590 90.5
MELO3C019462.2 Cucumis melo HOM05D004640 ORTHO05D005489 9.9e-277 956.4 574 90.1
ClCG05G009610 Citrullus lanatus HOM05D004640 ORTHO05D005489 2.5e-259 898.7 590 80.2
CiPaw.05G048700 Carya illinoinensis HOM05D004640 ORTHO05D005489 2.2e-236 822.4 555 81.3
QL02p099200 Quercus lobata HOM05D004640 ORTHO05D005489 8.8e-233 810.4 561 80.7
Glyma.15G045900 Glycine max HOM05D004640 ORTHO05D005489 2.0e-232 809.3 591 76.0
TWI59G0201 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 4.8e-231 804.7 592 75.3
Glyma.08G187100 Glycine max HOM05D004640 ORTHO05D005489 8.2e-231 803.9 561 78.6
Dinv24776 Davidia involucrata HOM05D004640 ORTHO05D005489 1.1e-230 803.5 563 79.6
Atru.chr6.619 Acer truncatum HOM05D004640 ORTHO05D005489 7.0e-230 800.8 578 77.2
Atru.chr6.621_Atru.chr6.622 Acer truncatum HOM05D004640 ORTHO05D005489 7.0e-230 800.8 578 77.2
Phvul.006G215300 Phaseolus vulgaris HOM05D004640 ORTHO05D005489 7.0e-230 800.8 586 75.8
TPR.G2079 Trifolium pratense HOM05D004640 ORTHO05D005489 4.5e-229 798.1 585 76.2
VMungo0540G1095 Vigna mungo HOM05D004640 ORTHO05D005489 3.8e-228 795.0 561 77.7
TWI14G1252 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 1.9e-227 792.7 561 78.1
Thecc.02G088200 Theobroma cacao HOM05D004640 ORTHO05D005489 3.2e-227 792.0 561 78.1
Gohir.A04G121200 Gossypium hirsutum HOM05D004640 ORTHO05D005489 2.3e-225 785.8 555 77.3
Medtr2g006880 Medicago truncatula HOM05D004640 ORTHO05D005489 8.8e-225 783.9 591 74.5
Duzib132G0532 Durio zibethinus HOM05D004640 ORTHO05D005489 1.2e-224 783.5 561 74.7
PGR142G2697 Punica granatum HOM05D004640 ORTHO05D005489 1.5e-224 783.1 559 77.5
Manes.10G125900 Manihot esculenta HOM05D004640 ORTHO05D005489 2.0e-224 782.7 592 74.7
CSS0031954 Camellia sinensis var. sinensis HOM05D004640 ORTHO05D005489 2.6e-224 782.3 586 75.3
CSS0010715 Camellia sinensis var. sinensis HOM05D004640 ORTHO05D005489 9.8e-224 780.4 586 75.1
Lalb_Chr20g0123511 Lupinus albus HOM05D004640 ORTHO05D005489 2.2e-223 779.2 554 78.5
Rhsim05G0203300 Rhododendron simsii HOM05D004640 ORTHO05D005489 3.7e-223 778.5 555 77.5
Eucgr.I02737 Eucalyptus grandis HOM05D004640 ORTHO05D005489 6.3e-223 777.7 561 76.1
Actinidia19942 Actinidia chinensis HOM05D004640 ORTHO05D005489 8.3e-223 777.3 575 76.0
Gorai.012G151900 Gossypium raimondii HOM05D004640 ORTHO05D005489 4.5e-221 771.5 582 70.6
Hma1.2p1_0296F.1_g116830 Hydrangea macrophylla HOM05D004640 ORTHO05D005489 7.7e-221 770.8 588 73.5
arahy.Tifrunner.gnm1.ann1.Y1PSG0 Arachis hypogaea HOM05D004640 ORTHO05D005489 8.5e-220 767.3 653 68.9
CANSAT11G0894 Cannabis sativa HOM05D004640 ORTHO05D005489 3.2e-219 765.4 563 75.8
Ciclev10000505m.g Citrus clementina HOM05D004640 ORTHO05D005489 4.7e-218 761.5 563 75.3
Potri.001G211700 Populus trichocarpa HOM05D004640 ORTHO05D005489 2.3e-217 759.2 584 74.7
Gorai.002G006000 Gossypium raimondii HOM05D004640 ORTHO05D005489 5.7e-216 754.6 597 71.2
Lj6g0021650 Lotus japonicus HOM05D004640 ORTHO05D005489 9.8e-216 753.8 554 75.6
GSVIVG01022882001 Vitis vinifera HOM05D004640 ORTHO05D005489 5.4e-214 748.0 559 76.0
arahy.Tifrunner.gnm1.ann1.8G9BB5 Arachis hypogaea HOM05D004640 ORTHO05D005489 1.7e-212 743.0 562 73.7
Gohir.D01G005100 Gossypium hirsutum HOM05D004640 ORTHO05D005489 6.1e-210 734.6 590 70.3
Gohir.A01G005001 Gossypium hirsutum HOM05D004640 ORTHO05D005489 1.0e-209 733.8 590 70.2
Sabra01G0163500 Salix brachista HOM05D004640 ORTHO05D005489 2.6e-208 729.2 567 74.4
Lsat_1_v5_gn_5_71601 Lactuca sativa HOM05D004640 ORTHO05D005489 5.7e-208 728.0 559 72.1
COL.COLO4_11782 Corchorus olitorius HOM05D004640 ORTHO05D005489 6.3e-207 724.5 518 77.2
Hund21765 Selenicereus undatus HOM05D004640 ORTHO05D005489 1.4e-206 723.4 554 74.5
RcHm_v2.0_Chr1g0332251 Rosa chinensis HOM05D004640 ORTHO05D005489 1.6e-205 719.9 563 72.5
Cc09_g07620 Coffea canephora HOM05D004640 ORTHO05D005489 5.9e-205 718.0 560 72.5
FvH4_5g29191 Fragaria vesca HOM05D004640 ORTHO05D005489 1.3e-204 716.8 562 72.2
Prupe.1G004500 Prunus persica HOM05D004640 ORTHO05D005489 1.3e-204 716.8 590 70.5
vmacro12737 Vaccinium macrocarpon HOM05D004640 ORTHO05D005489 3.9e-204 715.3 680 63.2
FAN08G0534 Fragaria x ananassa HOM05D004640 ORTHO05D005489 1.9e-203 713.0 560 72.1
AUR62006957 Chenopodium quinoa HOM05D004640 ORTHO05D005489 2.5e-203 712.6 562 72.8
Nn7g37934 Nelumbo nucifera HOM05D004640 ORTHO05D005489 3.6e-202 708.8 525 74.9
Sc09g0001940 Simmondsia chinensis HOM05D004640 ORTHO05D005489 4.7e-202 708.4 556 72.7
Aqoxy1G01535 Aquilegia oxysepala HOM05D004640 ORTHO05D005489 8.0e-202 707.6 595 67.1
MSTRG.23232 Avicennia marina HOM05D004640 ORTHO05D005489 8.0e-202 707.6 561 71.8
EL10Ac4g09724 Beta vulgaris HOM05D004640 ORTHO05D005489 1.0e-201 707.2 601 69.2
Solyc04g026280.2 Solanum lycopersicum HOM05D004640 ORTHO05D005489 1.0e-201 707.2 560 70.5
FAN13G0955 Fragaria x ananassa HOM05D004640 ORTHO05D005489 3.1e-201 705.7 564 71.8
Psat1g221200 Pisum sativum HOM05D004640 ORTHO05D005489 6.8e-201 704.5 511 76.1
Ca_00068_v3 Cicer arietinum L. HOM05D004640 ORTHO05D005489 2.6e-200 702.6 565 68.0
MD08G1235100 Malus domestica HOM05D004640 ORTHO05D005489 1.3e-199 700.3 558 71.7
MD15G1426300 Malus domestica HOM05D004640 ORTHO05D005489 1.3e-199 700.3 590 68.8
TWI23G1121 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 1.9e-198 696.4 576 69.3
Actinidia36578 Actinidia chinensis HOM05D004640 ORTHO05D005489 5.4e-198 694.9 544 73.3
Migut.H02548 Erythranthe guttata HOM05D004640 ORTHO05D005489 3.0e-196 689.1 555 71.2
PSO541G2962 Papaver somniferum HOM05D004640 ORTHO05D005489 2.5e-195 686.0 556 70.5
PSO675G0104 Papaver somniferum HOM05D004640 ORTHO05D005489 1.6e-194 683.3 556 70.1
AUR62000605 Chenopodium quinoa HOM05D004640 ORTHO05D005489 1.1e-193 680.6 550 71.1
Carub.0002s0421 Capsella rubella HOM05D004640 ORTHO05D005489 3.1e-193 679.1 562 70.1
THA.LOC104809619 Tarenaya hassleriana HOM05D004640 ORTHO05D005489 9.8e-192 674.1 554 71.1
Sopen04g014430 Solanum pennellii HOM05D004640 ORTHO05D005489 1.7e-191 673.3 544 69.9
Thhalv10023347m.g Eutrema salsugineum HOM05D004640 ORTHO05D005489 2.2e-191 672.9 564 69.0
HanXRQChr15g0469061 Helianthus annuus HOM05D004640 ORTHO05D005489 2.3e-188 662.9 553 69.4
ECA233G0813 Erigeron canadensis HOM05D004640 ORTHO05D005489 3.9e-188 662.1 529 70.7
BcaB04g20302 Brassica carinata HOM05D004640 ORTHO05D005489 6.6e-188 661.4 562 68.1
BcaC06g31828 Brassica carinata HOM05D004640 ORTHO05D005489 1.1e-187 660.6 564 67.6
BcaC02g10600 Brassica carinata HOM05D004640 ORTHO05D005489 2.5e-187 659.4 559 68.0
C04p25650 Brassica napus HOM05D004640 ORTHO05D005489 2.5e-187 659.4 559 68.0
C05p50900 Brassica napus HOM05D004640 ORTHO05D005489 2.5e-187 659.4 559 68.0
AL2G15460 Arabidopsis lyrata HOM05D004640 ORTHO05D005489 4.3e-187 658.7 590 65.4
A01p29810 Brassica napus HOM05D004640 ORTHO05D005489 1.6e-186 656.8 562 67.8
BraA01t03109Z Brassica rapa HOM05D004640 ORTHO05D005489 1.6e-186 656.8 562 67.8
Sp2g03520 Schrenkiella parvula HOM05D004640 ORTHO05D005489 1.6e-186 656.8 546 68.5
Lj4C822G11 Lonicera japonica HOM05D004640 ORTHO05D005489 2.1e-186 656.4 497 75.7
C01p37670 Brassica napus HOM05D004640 ORTHO05D005489 1.1e-185 654.1 562 67.4
BolC1t03731H Brassica oleracea HOM05D004640 ORTHO05D005489 1.1e-185 654.1 562 67.4
AT1G60995 Arabidopsis thaliana HOM05D004640 ORTHO05D005489 7.6e-184 647.9 542 68.8
Nitab4.5_0001785g0050 Nicotiana tabacum HOM05D004640 ORTHO05D005489 1.2e-181 640.6 652 57.7
SGA_v2.0_scaffold51G18853 Striga asiatica HOM05D004640 ORTHO05D005489 1.8e-177 626.7 560 66.2
FAN04G1948 Fragaria x ananassa HOM05D004640 ORTHO05D005489 2.5e-171 606.3 560 60.4
Os03g0659900 Oryza sativa ssp. japonica HOM05D004640 ORTHO05D005489 4.8e-170 602.1 565 62.3
Aa31LG2G9580 Aethionema arabicum HOM05D004640 ORTHO05D005489 8.1e-170 601.3 548 65.1
unitig_0.g396 Utricularia gibba HOM05D004640 ORTHO05D005489 6.0e-165 585.1 555 63.1
MBI01_g44452_MAGBIO Magnolia biondii HOM05D004640 ORTHO05D005489 4.0e-161 572.4 589 57.9
FAN18G0226 Fragaria x ananassa HOM05D004640 ORTHO05D005489 1.7e-159 567.0 566 58.0
Duzib052G0332 Durio zibethinus HOM05D004640 ORTHO05D005489 4.9e-159 565.5 578 60.6
BcaC09g49343 Brassica carinata HOM05D004640 ORTHO05D005489 5.1e-156 555.4 501 65.5
BolC4t24244H Brassica oleracea HOM05D004640 ORTHO05D005489 1.5e-155 553.9 467 64.5
HPP92_017742 Vanilla planifolia HOM05D004640 ORTHO05D005489 2.5e-155 553.1 559 60.1
Peaxi162Scf00577g00411 Petunia axillaris HOM05D004640 ORTHO05D005489 1.6e-154 550.4 560 56.6
Oeu032223.3 Olea europaea HOM05D000396 ORTHO05D000116 2.8e-154 549.7 344 86.3
DCAR_021303 Daucus carota HOM05D004640 ORTHO05D005489 4.0e-153 545.8 564 56.4
ATR0763G087 Amborella trichopoda HOM05D004640 ORTHO05D005489 2.0e-144 516.9 547 56.7
TAR381G0517 Trochodendron aralioides HOM05D004640 ORTHO05D005489 3.2e-142 509.6 638 50.5
Mapoly0014s0041 Marchantia polymorpha HOM05D004640 ORTHO05D005489 3.1e-137 493.0 599 51.1
Oeu046366.1 Olea europaea HOM05D004640 ORTHO05D005489 9.4e-134 481.5 591 54.3
Zm00001eb218090 Zea mays HOM05D004640 ORTHO05D005489 2.2e-127 460.3 339 77.0
Gohir.D04G163900 Gossypium hirsutum HOM05D004640 ORTHO05D005489 3.0e-124 449.9 291 84.5
Pp3c3_37820 Physcomitrium patens HOM05D004640 ORTHO05D005489 1.4e-121 441.0 598 46.7
Ah.06g188240 Amaranthus hybridus HOM05D004640 ORTHO05D005489 1.2e-120 438.0 505 55.8
AagrBONN_evm.TU.Sc2ySwM_344.1404 Anthoceros agrestis HOM05D004640 ORTHO05D005489 1.0e-116 424.9 568 46.7
Nitab4.5_0004809g0070 Nicotiana tabacum HOM05D004640 ORTHO05D005489 4.0e-116 422.9 528 48.5
Hund07189 Selenicereus undatus HOM05D004640 ORTHO05D005489 6.5e-111 405.6 555 47.4
SMO116G0341 Selaginella moellendorffii HOM05D004640 ORTHO05D005489 2.7e-104 383.6 563 44.0
CBR_g54224 Chara braunii HOM05D004640 ORTHO05D005489 1.5e-99 367.9 562 46.4
CAN.G124.21 Capsicum annuum HOM05D004640 ORTHO05D005489 3.6e-77 293.5 198 89.9
CDE12G0675 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 1.5e-75 288.1 293 57.7
TAR625G1136 Trochodendron aralioides HOM05D004640 ORTHO05D005489 6.6e-71 272.7 180 88.9
BraSC39t46176Z Brassica rapa HOM05D004640 ORTHO05D005489 4.0e-68 263.5 191 79.1
Haze_01729 Corylus avellana HOM05D004640 ORTHO05D005489 4.0e-68 263.5 191 86.4
Gohir.D04G163933 Gossypium hirsutum HOM05D004640 ORTHO05D005489 2.1e-61 241.1 200 62.5
CDE12G0207 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 4.7e-61 240.0 335 42.7
Manes.07G017650 Manihot esculenta HOM05D004640 ORTHO05D005489 3.4e-59 233.8 165 89.1
BNapus_Darmor_BZH_scaffold_271p00030 Brassica napus HOM05D004640 ORTHO05D005489 3.3e-54 217.2 324 42.0
CDE12G0158 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 9.9e-51 205.7 192 75.0
CDE12G0153 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 1.3e-50 205.3 282 42.9
BNapus_Darmor_BZH_scaffold_271p00020 Brassica napus HOM05D004640 ORTHO05D005489 2.5e-46 191.0 139 74.8
MBI01_g00654_MAGBIO Magnolia biondii HOM05D004640 ORTHO05D005489 3.6e-45 187.2 224 46.0
Haze_01724 Corylus avellana HOM05D004640 ORTHO05D005489 5.3e-44 183.3 166 59.0
RcHm_v2.0_Chr7g0230911 Rosa chinensis HOM05D004640 ORTHO05D005489 7.6e-43 179.5 102 95.1
CDE12G0722 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 9.9e-43 179.1 184 61.4
Haze_01727 Corylus avellana HOM05D004640 ORTHO05D005489 5.8e-35 153.3 83 85.5
EL10Ac4g09783 Beta vulgaris HOM05D004640 ORTHO05D005489 4.3e-30 137.1 141 71.6
EL10Ac4g09779 Beta vulgaris HOM05D004640 ORTHO05D005489 2.8e-29 134.4 168 53.0
HPP92_017709 Vanilla planifolia HOM05D004640 ORTHO05D005489 6.3e-29 133.3 247 36.4
arahy.Tifrunner.gnm1.ann1.2GJ950 Arachis hypogaea HOM05D004640 ORTHO05D005489 1.8e-23 115.2 89 76.4
PRCOL_00005332 Prasinoderma coloniale HOM05D004640 ORTHO05D005489 1.3e-21 109.0 328 26.8
TAR625G0944 Trochodendron aralioides HOM05D004640 ORTHO05D005489 2.2e-21 108.2 119 48.7
Haze_01804 Corylus avellana HOM05D004640 ORTHO05D005489 5.3e-20 103.6 58 82.8
SalBow8G0731 Salvia bowleyana HOM05D004640 ORTHO05D005489 1.8e-15 88.6 51 86.3
Haze_01802 Corylus avellana HOM05D004640 ORTHO05D005489 1.5e-14 85.5 73 61.6
arahy.Tifrunner.gnm1.ann1.5KT91U Arachis hypogaea HOM05D004640 ORTHO05D005489 2.6e-14 84.7 63 61.9
A03p68870 Brassica napus HOM05D004640 ORTHO05D005489 7.4e-14 83.2 113 41.6
BraSC39t46178Z Brassica rapa HOM05D004640 ORTHO05D005489 7.4e-14 83.2 113 41.6
SHI16685 Sapria himalayana HOM05D004640 ORTHO05D005489 7.4e-14 83.2 175 32.6
SEGI_15466 Sequoiadendron giganteum HOM05D004640 ORTHO05D005489 1.4e-12 79.0 147 33.3
Zm00001eb114350 Zea mays HOM05D004640 ORTHO05D005489 2.0e-11 75.1 53 62.3
Hma1.2p1_0340F.1_g130025 Hydrangea macrophylla HOM05D004640 ORTHO05D005489 5.9e-11 73.6 73 57.5
Hma1.2p1_2041F.1_g312210 Hydrangea macrophylla HOM05D004640 ORTHO05D005489 5.9e-11 73.6 73 57.5
arahy.Tifrunner.gnm1.ann1.FS0M29 Arachis hypogaea HOM05D001673 ORTHO05D012548 6.1e-08 63.5 136 31.6
RcHm_v2.0_Chr7g0219231 Rosa chinensis HOM05D003652 ORTHO05D005489 2.3e-07 61.6 36 88.9
RcHm_v2.0_Chr6g0266101 Rosa chinensis HOM05D004640 ORTHO05D005489 1.1e-06 59.3 32 90.6
SEGI_36483 Sequoiadendron giganteum HOM05D004640 ORTHO05D005489 1.5e-06 58.9 58 53.4


User provided reference genes

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