Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0025732 Sechium edule HOM05D005794 ORTHO05D006814 2.7e-146 521.9 258 100.0
Sed0001254 Sechium edule HOM05D005794 ORTHO05D006814 5.6e-67 258.5 240 62.9
Ca_28561_v3 Cicer arietinum L. HOM05D005794 ORTHO05D006814 6.4e-63 245.0 170 75.3
LjContig00315g0011412 Lotus japonicus HOM05D005794 ORTHO05D006814 2.4e-62 243.0 120 100.0
Lalb_Chr00c24g0406721 Lupinus albus HOM05D005794 ORTHO05D006814 2.4e-62 243.0 120 100.0
Medtr0082s0160 Medicago truncatula HOM05D005794 ORTHO05D006814 2.4e-62 243.0 120 100.0
RcHm_v2.0_Chr6g0257971 Rosa chinensis HOM05D005794 ORTHO05D006814 2.4e-62 243.0 120 100.0
RcHm_v2.0_MTg0498891 Rosa chinensis HOM05D005794 ORTHO05D006814 2.4e-62 243.0 120 100.0
arahy.Tifrunner.gnm1.ann1.3CRZ8T Arachis hypogaea HOM05D005794 ORTHO05D006814 2.1e-61 240.0 120 99.2
arahy.Tifrunner.gnm1.ann1.KSB3D6 Arachis hypogaea HOM05D005794 ORTHO05D006814 2.1e-61 240.0 120 99.2
arahy.Tifrunner.gnm1.ann1.TM4QCS Arachis hypogaea HOM05D005794 ORTHO05D006814 2.1e-61 240.0 120 99.2
arahy.Tifrunner.gnm1.ann1.R0J8GI Arachis hypogaea HOM05D005794 ORTHO05D006814 1.0e-60 237.7 120 98.3
arahy.Tifrunner.gnm1.ann1.Y4WQEL Arachis hypogaea HOM05D005794 ORTHO05D006814 1.0e-60 237.7 120 98.3
Glyma.12G155300 Glycine max HOM05D005794 ORTHO05D006814 1.3e-60 237.3 120 98.3
CsaV3_5G015890 Cucumis sativus L. HOM05D005794 ORTHO05D006814 1.8e-60 236.9 120 97.5
Lj3g0000092 Lotus japonicus HOM05D005794 ORTHO05D006814 3.0e-60 236.1 120 98.3
Medtr6g032895 Medicago truncatula HOM05D005794 ORTHO05D006814 6.7e-60 235.0 119 97.5
Duzib116G0905 Durio zibethinus HOM05D005794 ORTHO05D006814 2.5e-59 233.0 120 96.7
PGR028G0014 Punica granatum HOM05D005794 ORTHO05D006814 2.5e-59 233.0 124 93.5
Hma1.2p1_1338F.1_g276546 Hydrangea macrophylla HOM05D005794 ORTHO05D006814 7.4e-59 231.5 124 93.5
Actinidia34813 Actinidia chinensis HOM05D005794 ORTHO05D006814 2.8e-58 229.6 124 91.9
Actinidia34939 Actinidia chinensis HOM05D005794 ORTHO05D006814 2.8e-58 229.6 124 91.9
Dinv06703 Davidia involucrata HOM05D005794 ORTHO05D006814 4.8e-58 228.8 124 92.7
AL5G20240 Arabidopsis lyrata HOM05D005794 ORTHO05D006814 6.2e-58 228.4 120 95.0
A04p09480 Brassica napus HOM05D005794 ORTHO05D006814 6.2e-58 228.4 120 95.0
BolSC28t60379H Brassica oleracea HOM05D005794 ORTHO05D006814 6.2e-58 228.4 120 95.0
BolSC28t60413H Brassica oleracea HOM05D005794 ORTHO05D006814 6.2e-58 228.4 120 95.0
BraSC48t46249Z Brassica rapa HOM05D005794 ORTHO05D006814 6.2e-58 228.4 120 95.0
BraSC54t46376Z Brassica rapa HOM05D005794 ORTHO05D006814 6.2e-58 228.4 120 95.0
BraSC77t46625Z Brassica rapa HOM05D005794 ORTHO05D006814 6.2e-58 228.4 120 95.0
CARHR283070 Cardamine hirsuta HOM05D005794 ORTHO05D006814 6.2e-58 228.4 120 95.0
Sp3g25640 Schrenkiella parvula HOM05D005794 ORTHO05D006814 6.2e-58 228.4 120 95.0
CsaV3_5G015960 Cucumis sativus L. HOM05D005794 ORTHO05D006814 8.1e-58 228.0 117 96.6
DCAR_032446 Daucus carota HOM05D005794 ORTHO05D006814 8.1e-58 228.0 120 95.8
HanXRQMTg0579171 Helianthus annuus HOM05D005794 ORTHO05D006814 1.4e-57 227.3 124 91.9
Solyc00g500303.1 Solanum lycopersicum HOM05D005794 ORTHO05D006814 1.4e-57 227.3 120 95.0
Sopen00g001030 Solanum pennellii HOM05D005794 ORTHO05D006814 1.4e-57 227.3 120 95.0
Sopen06g006940 Solanum pennellii HOM05D005794 ORTHO05D006814 1.4e-57 227.3 120 95.0
Ah.10g027990 Amaranthus hybridus HOM05D005794 ORTHO05D006814 1.8e-57 226.9 120 94.2
CDE02G1904 Ceratophyllum demersum HOM05D005794 ORTHO05D006814 1.8e-57 226.9 124 91.1
Nn1g10154 Nelumbo nucifera HOM05D005794 ORTHO05D006814 1.8e-57 226.9 124 91.9
Cpa.g.c32646 Carica papaya HOM05D005794 ORTHO05D006814 3.1e-57 226.1 120 94.2
AT2G07687 Arabidopsis thaliana HOM05D005794 ORTHO05D006814 5.3e-57 225.3 120 94.2
ATMG00730 Arabidopsis thaliana HOM05D005794 ORTHO05D006814 5.3e-57 225.3 120 94.2
Lj2P1225T95 Lonicera japonica HOM05D005794 ORTHO05D006814 5.3e-57 225.3 124 91.9
CANSAT16G0022 Cannabis sativa HOM05D005794 ORTHO05D006814 9.0e-57 224.6 120 94.2
SGA_v2.0_scaffold575G53003 Striga asiatica HOM05D005794 ORTHO05D006814 1.5e-56 223.8 120 94.2
unitig_87.g28013 Utricularia gibba HOM05D005794 ORTHO05D006814 1.5e-56 223.8 120 94.2
Ah.02g118920 Amaranthus hybridus HOM05D005794 ORTHO05D006814 2.0e-56 223.4 143 80.4
Zm00001eb384510 Zea mays HOM05D005794 ORTHO05D006814 2.0e-56 223.4 120 94.2
Zm00001eb437480 Zea mays HOM05D005794 ORTHO05D006814 2.0e-56 223.4 120 94.2
Potri.007G062402 Populus trichocarpa HOM05D005794 ORTHO05D006814 2.6e-56 223.0 120 93.3
Sabra04G0097400 Salix brachista HOM05D005794 ORTHO05D006814 2.6e-56 223.0 120 93.3
SabraMtG0005200 Salix brachista HOM05D005794 ORTHO05D006814 2.6e-56 223.0 120 93.3
EL10Ac1g02199 Beta vulgaris HOM05D005794 ORTHO05D006814 3.4e-56 222.6 120 92.5
ECA039G0030 Erigeron canadensis HOM05D005794 ORTHO05D006814 2.2e-55 219.9 120 92.5
SHI15111 Sapria himalayana HOM05D005794 ORTHO05D006814 2.2e-55 219.9 119 90.8
Zm00001eb434650 Zea mays HOM05D005794 ORTHO05D006814 8.4e-55 218.0 117 94.0
Zm00001eb434760 Zea mays HOM05D005794 ORTHO05D006814 8.4e-55 218.0 117 94.0
Medtr0495s0020 Medicago truncatula HOM05D005794 ORTHO05D006814 2.1e-53 213.4 115 93.0
Lj2P1227T94 Lonicera japonica HOM05D005794 ORTHO05D006814 9.6e-51 204.5 124 85.5
Gorai.001G162400 Gossypium raimondii HOM05D005794 ORTHO05D006814 6.3e-50 201.8 101 98.0
Ah.10g028710 Amaranthus hybridus HOM05D005794 ORTHO05D006814 9.0e-49 198.0 106 93.4
Thhalv10023004m.g Eutrema salsugineum HOM05D005794 ORTHO05D006814 2.0e-48 196.8 101 96.0
DCAR_029125 Daucus carota HOM05D005794 ORTHO05D006814 4.5e-48 195.7 105 94.3
SEGI_38498 Sequoiadendron giganteum HOM05D005794 ORTHO05D006814 3.8e-47 192.6 117 82.9
SalBow1G4628 Salvia bowleyana HOM05D005794 ORTHO05D006814 3.2e-46 189.5 101 94.1
Lsat_1_v5_gn_0_2580 Lactuca sativa HOM05D005794 ORTHO05D006814 6.1e-45 185.3 100 94.0
Lsat_1_v5_gn_8_111680 Lactuca sativa HOM05D005794 ORTHO05D006814 6.1e-45 185.3 100 94.0
Lj1g0014382 Lotus japonicus HOM05D005794 ORTHO05D006814 7.9e-45 184.9 98 92.9
CsaV3_5G015820 Cucumis sativus L. HOM05D005794 ORTHO05D006814 6.7e-44 181.8 94 95.7
arahy.Tifrunner.gnm1.ann1.75B77C Arachis hypogaea HOM05D005794 ORTHO05D006814 2.5e-38 163.3 81 98.8
Nitab4.5_0008916g0010 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.4e-36 157.5 100 83.0
ATR0012G027 Amborella trichopoda HOM05D005794 ORTHO05D006814 3.0e-36 156.4 93 81.7
VMungo0720G2970 Vigna mungo HOM05D005794 ORTHO05D006814 3.9e-36 156.0 78 98.7
Nitab4.5_0009256g0040 Nicotiana tabacum HOM05D005794 ORTHO05D006814 2.0e-35 153.7 84 92.9
Nitab4.5_0005637g0070 Nicotiana tabacum HOM05D005794 ORTHO05D006814 3.3e-35 152.9 90 85.6
Gorai.013G213200 Gossypium raimondii HOM05D005794 ORTHO05D006814 5.7e-35 152.1 120 70.0
VMungo0720G2880 Vigna mungo HOM05D005794 ORTHO05D006814 7.4e-35 151.8 82 92.7
Nitab4.5_0001788g0090 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.9e-30 137.1 83 85.5
Nitab4.5_0004100g0090 Nicotiana tabacum HOM05D009808 ORTHO05D006814 2.7e-29 133.3 119 63.0
Lsat_1_v5_gn_5_16240 Lactuca sativa HOM05D005794 ORTHO05D006814 6.1e-29 132.1 71 91.5
Haze_26985 Corylus avellana HOM05D005794 ORTHO05D006814 6.3e-26 122.1 123 50.4
Nitab4.5_0003945g0100 Nicotiana tabacum HOM05D005794 ORTHO05D006814 8.2e-26 121.7 66 87.9
Nitab4.5_0004553g0080 Nicotiana tabacum HOM05D005794 ORTHO05D006814 7.0e-25 118.6 64 90.6
MELO3C018157.2 Cucumis melo HOM05D005794 ORTHO05D006814 3.5e-24 116.3 57 94.7
Nitab4.5_0000172g0610 Nicotiana tabacum HOM05D005794 ORTHO05D006814 7.7e-24 115.2 79 77.2
Nitab4.5_0000886g0250 Nicotiana tabacum HOM05D005794 ORTHO05D006814 5.5e-22 109.0 120 54.2
Nitab4.5_0002418g0190 Nicotiana tabacum HOM05D005794 ORTHO05D006814 2.0e-19 100.5 64 78.1
Lsat_1_v5_gn_4_64920 Lactuca sativa HOM05D024702 ORTHO05D025306 3.3e-19 99.8 65 80.0
SMO310G0001 Selaginella moellendorffii HOM05D005794 ORTHO05D006814 1.1e-17 94.7 112 50.0
Nitab4.5_0000172g1250 Nicotiana tabacum HOM05D005794 ORTHO05D006814 3.1e-17 93.2 50 94.0
Nitab4.5_0001152g0840 Nicotiana tabacum HOM05D005794 ORTHO05D006814 4.1e-17 92.8 66 71.2
Solyc00g019730.1 Solanum lycopersicum HOM05D005794 ORTHO05D006814 9.1e-17 91.7 51 88.2
CAN.G1.2 Capsicum annuum HOM05D005794 ORTHO05D006814 2.7e-16 90.1 54 83.3
TPR.G25412 Trifolium pratense HOM05D005794 ORTHO05D006814 1.5e-14 84.3 53 86.8
Cre04.g221700 Chlamydomonas reinhardtii HOM05D005794 ORTHO05D006814 2.1e-13 80.5 119 37.8
Nitab4.5_0002326g0060 Nicotiana tabacum HOM05D005794 ORTHO05D006814 2.1e-13 80.5 53 83.0
SHI37163 Sapria himalayana HOM05D005794 ORTHO05D006814 2.7e-13 80.1 47 83.0
Duzib116G0892 Durio zibethinus HOM05D005794 ORTHO05D006814 3.6e-13 79.7 59 72.9
Nitab4.5_0000681g0270 Nicotiana tabacum HOM05D005794 ORTHO05D006814 6.1e-13 79.0 54 77.8
PGSC0003DMG400004180 Solanum tuberosum HOM05D024702 ORTHO05D025306 4.0e-12 76.3 41 87.8
SHI14273 Sapria himalayana HOM05D005794 ORTHO05D006814 1.2e-11 74.7 65 60.0
BraSC224t45812Z Brassica rapa HOM05D005794 ORTHO05D006814 5.7e-11 72.4 33 100.0
Nitab4.5_0003945g0050 Nicotiana tabacum HOM05D018533 ORTHO05D006814 2.8e-10 70.1 33 97.0
Psat0s4951g0040 Pisum sativum HOM05D005794 ORTHO05D006814 1.1e-09 68.2 85 48.2
SHI35300 Sapria himalayana HOM05D005794 ORTHO05D006814 1.8e-09 67.4 48 72.9
Nitab4.5_0002418g0170 Nicotiana tabacum HOM05D009000 ORTHO05D010659 2.4e-09 67.0 31 93.5
SHI48376 Sapria himalayana HOM05D005794 ORTHO05D006814 1.2e-08 64.7 42 78.6
Lsat_1_v5_gn_5_16260 Lactuca sativa HOM05D005794 ORTHO05D006814 5.5e-06 55.8 35 80.0
QL93p0790_0012 Quercus lobata HOM05D003666 ORTHO05D004770 5.5e-06 55.8 58 39.7


User provided reference genes

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