Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0025730 Sechium edule HOM05D005616 ORTHO05D006975 1.7e-157 559.3 277 100.0
CsaV3_5G010220 Cucumis sativus L. HOM05D005616 ORTHO05D006975 7.2e-137 490.7 277 87.4
ClCG07G004280 Citrullus lanatus HOM05D005616 ORTHO05D006975 1.2e-136 490.0 276 87.0
MELO3C026789.2 Cucumis melo HOM05D005616 ORTHO05D006975 3.2e-124 448.7 252 88.1
Prupe.2G251100 Prunus persica HOM05D005616 ORTHO05D006975 2.3e-103 379.4 277 68.2
MD07G1223000 Malus domestica HOM05D005616 ORTHO05D006975 4.0e-103 378.6 277 67.5
Haze_17234 Corylus avellana HOM05D005616 ORTHO05D006975 1.5e-102 376.7 277 66.4
FAN07G0068 Fragaria x ananassa HOM05D005616 ORTHO05D006975 3.7e-101 372.1 278 66.9
RcHm_v2.0_Chr1g0370411 Rosa chinensis HOM05D005616 ORTHO05D006975 4.1e-100 368.6 277 66.4
FvH4_4g21980 Fragaria vesca HOM05D005616 ORTHO05D006975 4.6e-99 365.2 278 66.2
FAN01G0309 Fragaria x ananassa HOM05D001932 ORTHO05D006975 6.0e-99 364.8 275 67.3
FAN03G0254 Fragaria x ananassa HOM05D005616 ORTHO05D006975 1.7e-98 363.2 278 66.2
FvH4_7g24571 Fragaria vesca HOM05D005616 ORTHO05D006975 2.3e-98 362.8 278 67.3
FAN06G2993 Fragaria x ananassa HOM05D001932 ORTHO05D006975 2.5e-97 359.4 275 67.6
TWI09G1208 Tripterygium wilfordii HOM05D005616 ORTHO05D006975 2.8e-96 355.9 277 63.9
TPR.G11210 Trifolium pratense HOM05D005616 ORTHO05D006975 6.8e-95 351.3 277 63.9
AL6G15480 Arabidopsis lyrata HOM05D005616 ORTHO05D006975 9.9e-94 347.4 277 61.7
CSS0029859 Camellia sinensis var. sinensis HOM05D005616 ORTHO05D006975 9.9e-94 347.4 278 60.8
Ciclev10032361m.g Citrus clementina HOM05D005616 ORTHO05D006975 9.9e-94 347.4 279 63.8
FAN12G0831 Fragaria x ananassa HOM05D005616 ORTHO05D006975 2.2e-93 346.3 255 68.6
Lj6g0010776 Lotus japonicus HOM05D005616 ORTHO05D006975 2.2e-93 346.3 277 63.2
Dinv10614 Davidia involucrata HOM05D005616 ORTHO05D006975 2.9e-93 345.9 277 61.7
Manes.10G011400 Manihot esculenta HOM05D005616 ORTHO05D006975 2.9e-93 345.9 277 62.1
Lalb_Chr08g0231681 Lupinus albus HOM05D005616 ORTHO05D006975 3.8e-93 345.5 277 62.1
Thecc.10G015200 Theobroma cacao HOM05D005616 ORTHO05D006975 3.8e-93 345.5 277 62.5
Medtr3g070890 Medicago truncatula HOM05D005616 ORTHO05D006975 6.4e-93 344.7 277 63.5
Lj1g0010131 Lotus japonicus HOM05D005616 ORTHO05D006975 8.4e-93 344.4 277 62.8
Lj8A66T51 Lonicera japonica HOM05D005616 ORTHO05D006975 1.1e-92 344.0 277 61.0
AT1G07780 Arabidopsis thaliana HOM05D005616 ORTHO05D006975 2.4e-92 342.8 252 65.5
AT5G05590 Arabidopsis thaliana HOM05D005616 ORTHO05D006975 3.2e-92 342.4 252 65.5
FAN10G3671 Fragaria x ananassa HOM05D005616 ORTHO05D006975 5.4e-92 341.7 255 67.5
Medtr3g449480 Medicago truncatula HOM05D005616 ORTHO05D006975 5.4e-92 341.7 273 64.1
Sp6g37270 Schrenkiella parvula HOM05D005616 ORTHO05D006975 9.3e-92 340.9 237 68.4
Aa31LG11G6640 Aethionema arabicum HOM05D005616 ORTHO05D006975 1.6e-91 340.1 265 62.6
Gohir.A04G093400 Gossypium hirsutum HOM05D005616 ORTHO05D006975 1.6e-91 340.1 277 62.1
BcaB05g21694 Brassica carinata HOM05D005616 ORTHO05D006975 2.7e-91 339.3 238 70.6
BraA02t04856Z Brassica rapa HOM05D005616 ORTHO05D006975 2.7e-91 339.3 276 63.0
Psat5g129880 Pisum sativum HOM05D005616 ORTHO05D006975 2.7e-91 339.3 277 62.5
CARHR034480 Cardamine hirsuta HOM05D005616 ORTHO05D006975 3.5e-91 339.0 252 65.9
BcaB05g21698 Brassica carinata HOM05D005616 ORTHO05D006975 4.6e-91 338.6 277 61.7
Gorai.012G116600 Gossypium raimondii HOM05D005616 ORTHO05D006975 4.6e-91 338.6 273 61.9
Thhalv10014368m.g Eutrema salsugineum HOM05D005616 ORTHO05D006975 6.0e-91 338.2 237 68.4
Carub.0006s0449 Capsella rubella HOM05D005616 ORTHO05D006975 2.3e-90 336.3 278 60.8
Glyma.18G026400 Glycine max HOM05D005616 ORTHO05D006975 2.3e-90 336.3 274 61.7
BolC2t06207H Brassica oleracea HOM05D005616 ORTHO05D006975 3.0e-90 335.9 238 69.3
Cc02_g06410 Coffea canephora HOM05D005616 ORTHO05D006975 3.0e-90 335.9 276 61.2
Migut.F00691 Erythranthe guttata HOM05D005616 ORTHO05D006975 3.9e-90 335.5 277 61.4
THA.LOC104816542 Tarenaya hassleriana HOM05D005616 ORTHO05D006975 7.3e-89 331.3 261 64.0
Duzib128G0549 Durio zibethinus HOM05D005616 ORTHO05D006975 1.3e-88 330.5 277 59.9
Sabra08G0051100 Salix brachista HOM05D005616 ORTHO05D006975 1.3e-88 330.5 277 61.7
HanXRQChr08g0222401 Helianthus annuus HOM05D005616 ORTHO05D006975 2.8e-88 329.3 237 66.7
Phvul.001G244100 Phaseolus vulgaris HOM05D005616 ORTHO05D006975 3.6e-88 328.9 274 60.9
GSVIVG01032805001 Vitis vinifera HOM05D005616 ORTHO05D006975 4.8e-88 328.6 279 59.5
Nitab4.5_0005018g0020 Nicotiana tabacum HOM05D005616 ORTHO05D006975 8.1e-88 327.8 233 68.7
Cfa001309 Carpinus fangiana HOM05D005616 ORTHO05D006975 1.1e-87 327.4 207 74.9
ECA233G4091 Erigeron canadensis HOM05D005616 ORTHO05D006975 1.8e-87 326.6 278 59.4
Potri.008G069500 Populus trichocarpa HOM05D005616 ORTHO05D006975 1.8e-87 326.6 277 61.0
vmacro06962 Vaccinium macrocarpon HOM05D005616 ORTHO05D006975 1.8e-87 326.6 278 58.3
Aqoxy4G02536 Aquilegia oxysepala HOM05D005616 ORTHO05D006975 2.4e-87 326.2 277 60.3
Ca_15132_v3 Cicer arietinum L. HOM05D005616 ORTHO05D006975 3.1e-87 325.9 236 68.2
Glyma.11G230900 Glycine max HOM05D005616 ORTHO05D006975 3.1e-87 325.9 277 59.6
Nitab4.5_0003454g0010 Nicotiana tabacum HOM05D005616 ORTHO05D006975 3.1e-87 325.9 233 67.8
PGSC0003DMG400010237 Solanum tuberosum HOM05D005616 ORTHO05D006975 6.9e-87 324.7 274 59.1
CiPaw.02G193000 Carya illinoinensis HOM05D005616 ORTHO05D006975 1.5e-86 323.6 255 61.2
DCAR_023439 Daucus carota HOM05D005616 ORTHO05D006975 1.5e-86 323.6 222 70.3
Solyc02g076760.3 Solanum lycopersicum HOM05D005616 ORTHO05D006975 2.6e-86 322.8 263 60.1
MSTRG.8961 Avicennia marina HOM05D005616 ORTHO05D006975 5.8e-86 321.6 262 61.1
Peaxi162Scf00801g00729 Petunia axillaris HOM05D005616 ORTHO05D006975 1.3e-85 320.5 233 66.5
Solyc06g051410.4 Solanum lycopersicum HOM05D005616 ORTHO05D006975 1.3e-85 320.5 275 58.2
Sopen02g021670 Solanum pennellii HOM05D005616 ORTHO05D006975 1.7e-85 320.1 263 59.3
TAR623G1070 Trochodendron aralioides HOM05D005616 ORTHO05D006975 1.7e-85 320.1 245 63.7
arahy.Tifrunner.gnm1.ann1.061K9L Arachis hypogaea HOM05D005616 ORTHO05D006975 2.9e-85 319.3 205 74.6
arahy.Tifrunner.gnm1.ann1.R92L2M Arachis hypogaea HOM05D005616 ORTHO05D006975 4.9e-85 318.5 204 75.0
Gohir.A10G237500 Gossypium hirsutum HOM05D005616 ORTHO05D006975 4.9e-85 318.5 275 61.5
CSS0002000 Camellia sinensis var. sinensis HOM05D005616 ORTHO05D006975 8.4e-85 317.8 207 71.0
SalBow6G5046 Salvia bowleyana HOM05D005616 ORTHO05D006975 1.1e-84 317.4 234 65.8
Sopen06g017380 Solanum pennellii HOM05D005616 ORTHO05D006975 1.1e-84 317.4 268 58.6
VMungo1383G1171 Vigna mungo HOM05D005616 ORTHO05D006975 1.1e-84 317.4 232 66.4
CANSAT78G1638 Cannabis sativa HOM05D005616 ORTHO05D006975 1.9e-84 316.6 234 66.2
PGSC0003DMG401008474 Solanum tuberosum HOM05D005616 ORTHO05D006975 1.9e-84 316.6 268 59.0
SGA_v2.0_scaffold60G21012 Striga asiatica HOM05D005616 ORTHO05D006975 2.4e-84 316.2 252 61.1
Peaxi162Scf00284g01041 Petunia axillaris HOM05D005616 ORTHO05D006975 3.2e-84 315.8 233 66.1
Lsat_1_v5_gn_8_11701 Lactuca sativa HOM05D005616 ORTHO05D006975 4.2e-84 315.5 253 62.8
PSO339G0515 Papaver somniferum HOM05D005616 ORTHO05D006975 1.2e-83 313.9 282 56.7
Oeu004695.1 Olea europaea HOM05D005616 ORTHO05D006975 2.1e-83 313.2 234 65.0
PSO384G3782 Papaver somniferum HOM05D005616 ORTHO05D006975 2.1e-83 313.2 233 64.8
PSO675G8834 Papaver somniferum HOM05D005616 ORTHO05D006975 2.1e-83 313.2 276 57.2
EL10Ac1g02124 Beta vulgaris HOM05D005616 ORTHO05D006975 3.5e-83 312.4 224 66.5
Eucgr.J00201 Eucalyptus grandis HOM05D005616 ORTHO05D006975 4.6e-83 312.0 278 58.6
Potri.012G145600 Populus trichocarpa HOM05D005616 ORTHO05D006975 4.6e-83 312.0 236 66.1
SGA_v2.0_scaffold105G30487 Striga asiatica HOM05D005616 ORTHO05D006975 1.3e-82 310.5 245 61.6
CSS0019139 Camellia sinensis var. sinensis HOM05D005616 ORTHO05D006975 5.1e-82 308.5 207 69.6
PGR044G0338 Punica granatum HOM05D005616 ORTHO05D006975 6.6e-82 308.1 205 72.2
PSO017G0320 Papaver somniferum HOM05D005616 ORTHO05D006975 1.5e-81 307.0 228 65.4
Sc10g0002410 Simmondsia chinensis HOM05D005616 ORTHO05D006975 5.6e-81 305.1 281 53.7
COL.COLO4_25743 Corchorus olitorius HOM05D005616 ORTHO05D006975 2.8e-80 302.8 251 60.6
AUR62012260 Chenopodium quinoa HOM05D005616 ORTHO05D006975 3.6e-80 302.4 265 56.6
Gohir.D04G132700 Gossypium hirsutum HOM05D005616 ORTHO05D006975 4.0e-79 298.9 246 61.0
Gorai.011G289500 Gossypium raimondii HOM05D005616 ORTHO05D006975 5.3e-79 298.5 277 58.1
Hund13869 Selenicereus undatus HOM05D005616 ORTHO05D006975 1.5e-78 297.0 243 61.3
Gohir.D10G249200 Gossypium hirsutum HOM05D005616 ORTHO05D006975 2.6e-78 296.2 277 57.8
AUR62022893 Chenopodium quinoa HOM05D005616 ORTHO05D006975 5.8e-78 295.0 242 61.2
Aqoxy5G03614 Aquilegia oxysepala HOM05D005616 ORTHO05D006975 4.2e-76 288.9 196 70.4
MBI19_g36756_MAGBIO Magnolia biondii HOM05D005616 ORTHO05D006975 3.5e-75 285.8 223 63.2
Nitab4.5_0010803g0020 Nicotiana tabacum HOM05D005616 ORTHO05D006975 1.3e-74 283.9 204 69.1
SHI03421 Sapria himalayana HOM05D005616 ORTHO05D006975 1.3e-74 283.9 210 65.2
Zm00001eb203980 Zea mays HOM05D005616 ORTHO05D006975 7.4e-73 278.1 241 59.3
Os02g0266000 Oryza sativa ssp. japonica HOM05D005616 ORTHO05D006975 2.8e-72 276.2 207 64.7
ATR0730G169 Amborella trichopoda HOM05D005616 ORTHO05D006975 6.2e-72 275.0 223 60.1
HPP92_011508 Vanilla planifolia HOM05D005616 ORTHO05D006975 2.4e-71 273.1 234 56.8
Zm00001eb281510 Zea mays HOM05D005616 ORTHO05D006975 6.5e-69 265.0 235 55.3
AUR62028615 Chenopodium quinoa HOM05D005616 ORTHO05D006975 3.5e-67 259.2 251 55.8
SEGI_33372 Sequoiadendron giganteum HOM05D005616 ORTHO05D006975 6.0e-67 258.5 205 62.0
TAR369G1110 Trochodendron aralioides HOM05D005616 ORTHO05D006975 3.3e-65 252.7 214 58.9
unitig_0.g2023 Utricularia gibba HOM05D005616 ORTHO05D006975 5.7e-65 251.9 203 58.1
Pp3c17_23550 Physcomitrium patens HOM05D005616 ORTHO05D006975 3.6e-59 232.6 209 55.0
Aqoxy332s005 Aquilegia oxysepala HOM05D005616 ORTHO05D006975 1.8e-58 230.3 182 65.9
AagrBONN_evm.TU.Sc2ySwM_228.1039 Anthoceros agrestis HOM05D005616 ORTHO05D006975 1.8e-55 220.3 209 51.7
AT1G29410 Arabidopsis thaliana HOM05D005616 ORTHO05D006975 4.1e-55 219.2 201 55.2
Mapoly0041s0067 Marchantia polymorpha HOM05D005616 ORTHO05D006975 1.5e-54 217.2 206 53.4
Cre12.g519000 Chlamydomonas reinhardtii HOM05D005616 ORTHO05D006975 2.0e-54 216.9 245 45.7
C02p02440 Brassica napus HOM05D005616 ORTHO05D006975 1.0e-53 214.5 162 67.3
SMO364G0619 Selaginella moellendorffii HOM05D005616 ORTHO05D006975 1.0e-53 214.5 211 52.1
CDE02G4500 Ceratophyllum demersum HOM05D005293 ORTHO05D006764 9.4e-52 208.0 191 55.5
CAN.G370.83 Capsicum annuum HOM05D002257 ORTHO05D006975 6.1e-51 205.3 196 54.6
MCO02G328 Micromonas commoda HOM05D005616 ORTHO05D006975 5.9e-46 188.7 237 38.8
Dinv21739 Davidia involucrata HOM05D005616 ORTHO05D006975 7.7e-46 188.3 119 71.4
PRCOL_00006470 Prasinoderma coloniale HOM05D005616 ORTHO05D006975 1.4e-39 167.5 212 42.5
CiPaw.01G059100 Carya illinoinensis HOM05D005616 ORTHO05D006975 4.2e-36 156.0 109 67.0
FAN17G0984 Fragaria x ananassa HOM05D002859 ORTHO05D003120 2.3e-34 150.2 137 59.1
Potri.014G188400 Populus trichocarpa HOM05D005616 ORTHO05D006975 2.0e-25 120.6 130 50.8
DCAR_029632 Daucus carota HOM05D000090 ORTHO05D001584 2.6e-25 120.2 91 61.5
Nn2g13147 Nelumbo nucifera HOM05D005616 ORTHO05D006975 2.6e-25 120.2 105 57.1
MSTRG.13829 Avicennia marina HOM05D005616 ORTHO05D006975 1.1e-20 104.8 88 60.2
CBR_g37169 Chara braunii HOM05D005616 ORTHO05D006975 1.5e-20 104.4 113 45.1
Atru.chr12.48 Acer truncatum HOM05D005616 ORTHO05D006975 8.0e-19 98.6 110 44.5
Dinv21738 Davidia involucrata HOM05D005616 ORTHO05D006975 1.4e-15 87.8 63 66.7
Cfa025268 Carpinus fangiana HOM05D003366 ORTHO05D004562 2.7e-14 83.6 251 31.9
Atru.chr7.2145 Acer truncatum HOM05D005616 ORTHO05D006975 2.2e-08 63.9 44 65.9
SGA_v2.0_scaffold250G44984 Striga asiatica HOM05D005616 ORTHO05D401959 5.4e-07 59.3 58 53.4


User provided reference genes

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