Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0025719 Sechium edule HOM05D007425 ORTHO05D009334 5.9e-104 380.9 202 100.0
CsaV3_3G013300 Cucumis sativus L. HOM05D007425 ORTHO05D009334 1.5e-70 270.0 181 84.5
MELO3C006532.2 Cucumis melo HOM05D007425 ORTHO05D009334 7.3e-70 267.7 182 85.2
Sed0000110 Sechium edule HOM05D007425 ORTHO05D009334 2.6e-59 232.6 177 75.7
CiPaw.01G166700 Carya illinoinensis HOM05D007425 ORTHO05D009334 1.9e-30 136.7 182 47.8
Haze_00892 Corylus avellana HOM05D007425 ORTHO05D009334 7.3e-30 134.8 179 51.4
FAN13G1551 Fragaria x ananassa HOM05D007425 ORTHO05D009334 2.1e-29 133.3 177 48.6
CANSAT78G0262 Cannabis sativa HOM05D007425 ORTHO05D009334 3.6e-29 132.5 184 47.8
Manes.03G178200 Manihot esculenta HOM05D007425 ORTHO05D009334 3.6e-29 132.5 174 53.4
Potri.008G153400 Populus trichocarpa HOM05D007425 ORTHO05D009334 4.8e-29 132.1 176 47.7
Duzib212G0056 Durio zibethinus HOM05D007425 ORTHO05D009334 6.2e-29 131.7 180 53.9
RcHm_v2.0_Chr7g0190521 Rosa chinensis HOM05D007425 ORTHO05D009334 6.2e-29 131.7 183 48.1
Thecc.04G232500 Theobroma cacao HOM05D007425 ORTHO05D009334 8.1e-29 131.3 176 51.7
Cfa015652 Carpinus fangiana HOM05D007425 ORTHO05D009334 1.1e-28 131.0 170 50.0
Cpa.g.sc9.287 Carica papaya HOM05D007425 ORTHO05D009334 1.4e-28 130.6 179 50.3
Migut.G00341 Erythranthe guttata HOM05D007425 ORTHO05D009334 1.4e-28 130.6 164 52.4
QL06p002223 Quercus lobata HOM05D007425 ORTHO05D009334 1.4e-28 130.6 180 48.9
Sc13g0004450 Simmondsia chinensis HOM05D007425 ORTHO05D009334 1.4e-28 130.6 149 51.7
Atru.chr4.2458 Acer truncatum HOM05D007425 ORTHO05D009334 1.8e-28 130.2 176 48.9
MSTRG.24738 Avicennia marina HOM05D007425 ORTHO05D009334 1.8e-28 130.2 126 60.3
Sabra08G0117000 Salix brachista HOM05D007425 ORTHO05D009334 3.1e-28 129.4 176 46.6
MD13G1193800 Malus domestica HOM05D007425 ORTHO05D009334 4.0e-28 129.0 172 51.2
Prupe.1G014400 Prunus persica HOM05D007425 ORTHO05D009334 4.0e-28 129.0 193 47.2
PGR142G3696 Punica granatum HOM05D007425 ORTHO05D009334 4.0e-28 129.0 178 48.3
Aa31LG9G2430 Aethionema arabicum HOM05D007425 ORTHO05D009334 6.9e-28 128.3 149 53.7
Gohir.A09G216200 Gossypium hirsutum HOM05D007425 ORTHO05D009334 6.9e-28 128.3 178 51.7
SGA_v2.0_scaffold39G15229 Striga asiatica HOM05D007425 ORTHO05D009334 6.9e-28 128.3 178 48.3
Gohir.D09G218600 Gossypium hirsutum HOM05D007425 ORTHO05D009334 9.0e-28 127.9 178 51.7
AL7G40980 Arabidopsis lyrata HOM05D007425 ORTHO05D009334 1.2e-27 127.5 142 53.5
Duzib151G0901 Durio zibethinus HOM05D007425 ORTHO05D009334 1.2e-27 127.5 183 50.3
THA.LOC104803027 Tarenaya hassleriana HOM05D007425 ORTHO05D009334 1.5e-27 127.1 123 63.4
THA.LOC104822268 Tarenaya hassleriana HOM05D007425 ORTHO05D009334 2.0e-27 126.7 181 49.7
Cc03_g03840 Coffea canephora HOM05D007425 ORTHO05D009334 3.4e-27 125.9 187 46.0
FAN04G2988 Fragaria x ananassa HOM05D007425 ORTHO05D009334 4.5e-27 125.6 169 47.9
CARHR221470 Cardamine hirsuta HOM05D007425 ORTHO05D009334 5.8e-27 125.2 148 52.0
Gorai.006G239600 Gossypium raimondii HOM05D007425 ORTHO05D009334 5.8e-27 125.2 184 52.2
BraA01t02180Z Brassica rapa HOM05D007425 ORTHO05D009334 7.6e-27 124.8 142 56.3
MD16G1194500 Malus domestica HOM05D007425 ORTHO05D009334 1.7e-26 123.6 178 48.3
Oeu031224.1 Olea europaea HOM05D007425 ORTHO05D009334 1.7e-26 123.6 180 46.7
Oeu031227.1 Olea europaea HOM05D007425 ORTHO05D009334 1.7e-26 123.6 180 46.7
Oeu031228.1 Olea europaea HOM05D007425 ORTHO05D009334 1.7e-26 123.6 180 46.7
Sp7g13010 Schrenkiella parvula HOM05D007425 ORTHO05D009334 1.7e-26 123.6 154 51.9
BcaNung00324 Brassica carinata HOM05D007425 ORTHO05D009334 2.2e-26 123.2 142 56.3
Lj3P734T17 Lonicera japonica HOM05D007425 ORTHO05D009334 2.2e-26 123.2 174 46.6
COL.COLO4_21483 Corchorus olitorius HOM05D007425 ORTHO05D009334 3.8e-26 122.5 132 58.3
Eucgr.L01274 Eucalyptus grandis HOM05D007425 ORTHO05D009334 4.9e-26 122.1 124 59.7
FvH4_5g07900 Fragaria vesca HOM05D007425 ORTHO05D009334 4.9e-26 122.1 168 47.0
FAN18G2754 Fragaria x ananassa HOM05D007425 ORTHO05D009334 4.9e-26 122.1 168 47.0
Glyma.01G237800 Glycine max HOM05D007425 ORTHO05D009334 4.9e-26 122.1 166 46.4
TAR636G0682 Trochodendron aralioides HOM05D007425 ORTHO05D009334 4.9e-26 122.1 172 45.9
C01p28260 Brassica napus HOM05D007425 ORTHO05D009334 6.4e-26 121.7 153 53.6
Carub.0007s2724 Capsella rubella HOM05D007425 ORTHO05D009334 6.4e-26 121.7 87 75.9
AT4G14870 Arabidopsis thaliana HOM05D007425 ORTHO05D009334 8.4e-26 121.3 87 75.9
BcaC09g50166 Brassica carinata HOM05D007425 ORTHO05D009334 1.1e-25 120.9 152 53.9
BolC1t02755H Brassica oleracea HOM05D007425 ORTHO05D009334 1.1e-25 120.9 152 53.9
Eucgr.L02493 Eucalyptus grandis HOM05D007425 ORTHO05D009334 1.1e-25 120.9 187 47.1
Hma1.2p1_0275F.1_g110893 Hydrangea macrophylla HOM05D007425 ORTHO05D009334 1.1e-25 120.9 116 63.8
Hma1.2p1_0275F.1_g110900 Hydrangea macrophylla HOM05D007425 ORTHO05D009334 1.1e-25 120.9 116 63.8
PSO170G1990 Papaver somniferum HOM05D007425 ORTHO05D009334 1.1e-25 120.9 174 48.3
SalBow3G4464 Salvia bowleyana HOM05D007425 ORTHO05D009334 1.4e-25 120.6 133 54.9
HanXRQChr08g0229221 Helianthus annuus HOM05D007425 ORTHO05D009334 1.9e-25 120.2 89 73.0
PSO017G2433 Papaver somniferum HOM05D007425 ORTHO05D009334 2.4e-25 119.8 131 56.5
VMungo1215G1239 Vigna mungo HOM05D007425 ORTHO05D009334 2.4e-25 119.8 135 53.3
Rhsim04G0201800 Rhododendron simsii HOM05D007425 ORTHO05D009334 5.4e-25 118.6 184 45.1
CSS0011351 Camellia sinensis var. sinensis HOM05D007425 ORTHO05D009334 9.3e-25 117.9 181 46.4
Lsat_1_v5_gn_9_18440 Lactuca sativa HOM05D007425 ORTHO05D009334 1.2e-24 117.5 93 64.5
Thhalv10026366m.g Eutrema salsugineum HOM05D007425 ORTHO05D009334 1.6e-24 117.1 174 48.3
PGSC0003DMG400032277 Solanum tuberosum HOM05D007425 ORTHO05D009334 4.6e-24 115.5 84 72.6
Phvul.002G045100 Phaseolus vulgaris HOM05D007425 ORTHO05D009334 6.0e-24 115.2 130 52.3
DCAR_002385 Daucus carota HOM05D007425 ORTHO05D009334 1.0e-23 114.4 176 42.6
Nn4g26476 Nelumbo nucifera HOM05D007425 ORTHO05D009334 1.3e-23 114.0 180 43.3
Nitab4.5_0004258g0010 Nicotiana tabacum HOM05D007425 ORTHO05D009334 1.8e-23 113.6 186 44.6
Eucgr.B01085 Eucalyptus grandis HOM05D007425 ORTHO05D009334 3.0e-23 112.8 132 53.0
Dinv13997 Davidia involucrata HOM05D001000 ORTHO05D002976 5.1e-23 112.1 115 60.0
Aqoxy7G02632 Aquilegia oxysepala HOM05D007425 ORTHO05D009334 3.3e-22 109.4 173 45.7
Sopen09g030940 Solanum pennellii HOM05D007425 ORTHO05D009334 3.3e-22 109.4 189 46.0
Ah.14g089400 Amaranthus hybridus HOM05D007425 ORTHO05D009334 7.4e-22 108.2 175 42.3
EL10Ac3g06446 Beta vulgaris HOM05D007425 ORTHO05D009334 7.4e-22 108.2 108 56.5
ECA247G1832 Erigeron canadensis HOM05D007425 ORTHO05D009334 9.6e-22 107.8 91 63.7
CAN.G490.15 Capsicum annuum HOM05D007425 ORTHO05D009334 1.3e-21 107.5 75 77.3
Psat2g124560 Pisum sativum HOM05D007425 ORTHO05D009334 4.8e-21 105.5 83 63.9
AUR62033636 Chenopodium quinoa HOM05D007425 ORTHO05D009334 6.2e-21 105.1 130 50.0
LjContig00408g0025154 Lotus japonicus HOM05D007425 ORTHO05D009334 8.1e-21 104.8 118 53.4
arahy.Tifrunner.gnm1.ann1.CGGZ98 Arachis hypogaea HOM05D007425 ORTHO05D009334 1.1e-20 104.4 182 42.9
Medtr5g038520 Medicago truncatula HOM05D007425 ORTHO05D009334 2.4e-20 103.2 83 62.7
unitig_32.g10818 Utricularia gibba HOM05D007425 ORTHO05D009334 2.4e-20 103.2 115 52.2
CDE04G2079 Ceratophyllum demersum HOM05D007425 ORTHO05D009334 9.0e-20 101.3 67 71.6
MBI16_g00841_MAGBIO Magnolia biondii HOM05D007425 ORTHO05D009334 9.0e-20 101.3 172 43.6
TAR636G0596 Trochodendron aralioides HOM05D007425 ORTHO05D009334 9.0e-20 101.3 67 77.6
Ciclev10006055m.g Citrus clementina HOM05D007425 ORTHO05D009334 1.2e-19 100.9 173 41.6
Zm00001eb375110 Zea mays HOM05D007425 ORTHO05D009334 2.6e-19 99.8 172 45.9
Ca_04746_v3 Cicer arietinum L. HOM05D007425 ORTHO05D009334 5.8e-19 98.6 75 72.0
SGA_v2.0_scaffold52G19002 Striga asiatica HOM05D006387 ORTHO05D008533 3.8e-18 95.9 69 69.6
HPP92_010419 Vanilla planifolia HOM05D007425 ORTHO05D009334 3.8e-18 95.9 140 47.9
Nitab4.5_0000043g0080 Nicotiana tabacum HOM05D007425 ORTHO05D009334 6.5e-18 95.1 180 42.2
ATR0626G045 Amborella trichopoda HOM05D007425 ORTHO05D009334 3.2e-17 92.8 165 42.4
Os04g0306750 Oryza sativa ssp. japonica HOM05D007425 ORTHO05D009334 7.1e-17 91.7 59 76.3
Lalb_Chr05g0211001 Lupinus albus HOM05D007425 ORTHO05D009334 1.8e-15 87.0 87 52.9
SEGI_06187 Sequoiadendron giganteum HOM05D007425 ORTHO05D009334 1.5e-14 84.0 62 67.7
Pp3c2_27330 Physcomitrium patens HOM05D007425 ORTHO05D009334 1.8e-12 77.0 114 43.0
Mapoly0070s0085 Marchantia polymorpha HOM05D007425 ORTHO05D009334 1.0e-10 71.2 113 41.6
Os08g0399050 Oryza sativa ssp. japonica HOM05D007425 ORTHO05D009334 6.5e-10 68.6 78 53.8
SMO358G0357 Selaginella moellendorffii HOM05D013303 ORTHO05D015288 2.3e-07 60.1 113 45.1
AUR62034746 Chenopodium quinoa HOM05D007425 ORTHO05D009334 1.1e-06 57.8 139 33.8


User provided reference genes

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