Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0025711 Sechium edule HOM05D005660 ORTHO05D006954 8.1e-109 397.1 207 100.0
CsaV3_1G006460 Cucumis sativus L. HOM05D005660 ORTHO05D006954 1.8e-84 316.2 208 77.9
MELO3C002072.2 Cucumis melo HOM05D005660 ORTHO05D006954 1.7e-82 309.7 209 77.5
Sed0025679 Sechium edule HOM05D005660 ORTHO05D006954 1.0e-79 300.4 209 73.7
Peaxi162Scf00015g00624 Petunia axillaris HOM05D005660 ORTHO05D006954 3.0e-71 272.3 206 67.5
QL10p023157 Quercus lobata HOM05D005660 ORTHO05D006954 6.7e-71 271.2 206 68.0
Dinv36893 Davidia involucrata HOM05D005660 ORTHO05D006954 3.7e-69 265.4 204 67.2
Atru.chr9.733 Acer truncatum HOM05D005660 ORTHO05D006954 6.3e-69 264.6 208 66.3
FvH4_5g12810 Fragaria vesca HOM05D005660 ORTHO05D006954 1.4e-68 263.5 206 65.0
FAN18G2100 Fragaria x ananassa HOM05D005660 ORTHO05D006954 3.1e-68 262.3 206 65.0
CiPaw.16G083200 Carya illinoinensis HOM05D005660 ORTHO05D006954 4.1e-68 261.9 206 66.0
FAN08G1036 Fragaria x ananassa HOM05D005660 ORTHO05D006954 4.1e-68 261.9 206 64.6
RcHm_v2.0_Chr7g0184421 Rosa chinensis HOM05D005660 ORTHO05D006954 4.1e-68 261.9 206 64.1
CAN.G438.109 Capsicum annuum HOM05D005660 ORTHO05D006954 1.2e-67 260.4 213 63.4
CANSAT80G1116 Cannabis sativa HOM05D005660 ORTHO05D006954 1.6e-67 260.0 206 64.6
FAN18G0270 Fragaria x ananassa HOM05D005660 ORTHO05D006954 2.6e-67 259.2 206 64.6
COL.COLO4_38430 Corchorus olitorius HOM05D005660 ORTHO05D006954 1.7e-66 256.5 204 65.2
Lj5C141T17 Lonicera japonica HOM05D005660 ORTHO05D006954 1.7e-66 256.5 203 62.6
Nitab4.5_0003716g0100 Nicotiana tabacum HOM05D005660 ORTHO05D006954 1.7e-66 256.5 207 62.3
PGR083G1435 Punica granatum HOM05D005660 ORTHO05D006954 1.7e-66 256.5 211 64.5
Lj1g0000047 Lotus japonicus HOM05D005660 ORTHO05D006954 5.0e-66 255.0 205 63.4
CSS0007003 Camellia sinensis var. sinensis HOM05D005660 ORTHO05D006954 1.1e-65 253.8 204 63.7
Cc04_g07620 Coffea canephora HOM05D005660 ORTHO05D006954 5.5e-65 251.5 203 63.1
Duzib068G0469 Durio zibethinus HOM05D005660 ORTHO05D006954 1.2e-64 250.4 209 61.7
Ciclev10022237m.g Citrus clementina HOM05D005660 ORTHO05D006954 1.6e-64 250.0 205 62.9
Thecc.03G027100 Theobroma cacao HOM05D005660 ORTHO05D006954 2.1e-64 249.6 204 63.2
Eucgr.B00688 Eucalyptus grandis HOM05D005660 ORTHO05D006954 3.6e-64 248.8 205 61.5
Solyc03g119840.3 Solanum lycopersicum HOM05D005660 ORTHO05D006954 3.6e-64 248.8 208 61.5
Glyma.04G145600 Glycine max HOM05D005660 ORTHO05D006954 8.0e-64 247.7 204 63.7
PGSC0003DMG400004073 Solanum tuberosum HOM05D005660 ORTHO05D006954 1.0e-63 247.3 200 62.5
Prupe.5G216100 Prunus persica HOM05D005660 ORTHO05D006954 1.8e-63 246.5 207 60.4
TWI81G0064 Tripterygium wilfordii HOM05D005660 ORTHO05D006954 3.0e-63 245.7 203 62.1
MD14G1220800 Malus domestica HOM05D005660 ORTHO05D006954 4.0e-63 245.4 213 59.6
Gohir.A12G265100 Gossypium hirsutum HOM05D005660 ORTHO05D006954 5.2e-63 245.0 204 60.8
Oeu016162.1 Olea europaea HOM05D005660 ORTHO05D006954 6.7e-63 244.6 199 63.3
MD06G1209900 Malus domestica HOM05D005660 ORTHO05D006954 8.8e-63 244.2 213 59.6
Migut.K00381 Erythranthe guttata HOM05D005660 ORTHO05D006954 1.2e-62 243.8 199 60.3
VMungo1309G1625 Vigna mungo HOM05D005660 ORTHO05D006954 1.5e-62 243.4 204 62.7
Lalb_Chr07g0178541 Lupinus albus HOM05D005660 ORTHO05D006954 2.0e-62 243.0 203 61.6
Gohir.D12G265300 Gossypium hirsutum HOM05D005660 ORTHO05D006954 2.6e-62 242.7 204 59.8
Actinidia39803 Actinidia chinensis HOM05D005660 ORTHO05D006954 3.3e-62 242.3 204 61.8
Glyma.06G209600 Glycine max HOM05D005660 ORTHO05D006954 3.3e-62 242.3 206 63.6
arahy.Tifrunner.gnm1.ann1.IPQJ9D Arachis hypogaea HOM05D005660 ORTHO05D006954 4.4e-62 241.9 203 58.1
Lsat_1_v5_gn_1_15860 Lactuca sativa HOM05D005660 ORTHO05D006954 9.7e-62 240.7 209 57.4
SalBow2G0395 Salvia bowleyana HOM05D005660 ORTHO05D006954 1.3e-61 240.4 200 60.5
Potri.012G059100 Populus trichocarpa HOM05D005660 ORTHO05D006954 1.7e-61 240.0 206 62.6
Lj4g0015648 Lotus japonicus HOM05D005660 ORTHO05D006954 2.2e-61 239.6 203 60.1
HanXRQChr02g0042751 Helianthus annuus HOM05D005660 ORTHO05D006954 1.4e-60 236.9 212 58.0
Glyma.05G014100 Glycine max HOM05D005660 ORTHO05D006954 1.8e-60 236.5 203 59.6
Medtr2g055760 Medicago truncatula HOM05D005660 ORTHO05D006954 2.4e-60 236.1 210 59.5
Glyma.17G122400 Glycine max HOM05D005660 ORTHO05D006954 7.0e-60 234.6 203 59.6
ECA247G3454 Erigeron canadensis HOM05D005660 ORTHO05D006954 9.1e-60 234.2 209 56.0
Manes.05G117900 Manihot esculenta HOM05D005660 ORTHO05D006954 2.0e-59 233.0 207 60.4
arahy.Tifrunner.gnm1.ann1.YK8N2P Arachis hypogaea HOM05D005660 ORTHO05D006954 2.7e-59 232.6 203 57.1
Psat1g025680 Pisum sativum HOM05D005660 ORTHO05D006954 2.7e-59 232.6 207 60.4
arahy.Tifrunner.gnm1.ann1.18T8HP Arachis hypogaea HOM05D005660 ORTHO05D006954 5.9e-59 231.5 209 58.9
Gorai.008G285000 Gossypium raimondii HOM05D005660 ORTHO05D006954 1.0e-58 230.7 237 51.9
Nitab4.5_0010134g0010 Nicotiana tabacum HOM05D005660 ORTHO05D006954 1.0e-58 230.7 202 59.9
HanXRQChr04g0105941 Helianthus annuus HOM05D005660 ORTHO05D006954 5.0e-58 228.4 204 55.9
Hund09993 Selenicereus undatus HOM05D005660 ORTHO05D006954 6.5e-58 228.0 217 55.8
ClCG04G011310 Citrullus lanatus HOM05D005660 ORTHO05D006954 4.2e-57 225.3 134 88.1
Nitab4.5_0001432g0090 Nicotiana tabacum HOM05D005660 ORTHO05D006954 4.2e-57 225.3 212 54.7
Aqoxy3G03878 Aquilegia oxysepala HOM05D005660 ORTHO05D006954 7.2e-57 224.6 203 56.7
MSTRG.9561 Avicennia marina HOM05D005660 ORTHO05D006954 7.2e-57 224.6 196 58.2
Sopen06g026530 Solanum pennellii HOM05D005660 ORTHO05D006954 2.1e-56 223.0 200 58.5
EL10Ac5g11240 Beta vulgaris HOM05D005660 ORTHO05D006954 2.7e-56 222.6 205 54.1
Manes.01G021600 Manihot esculenta HOM05D005660 ORTHO05D006954 2.7e-56 222.6 206 58.3
Nn3g17686 Nelumbo nucifera HOM05D005660 ORTHO05D006954 2.7e-56 222.6 201 58.2
CiPaw.15G125200 Carya illinoinensis HOM05D005660 ORTHO05D006954 6.1e-56 221.5 214 57.9
Nitab4.5_0000410g0170 Nicotiana tabacum HOM05D005660 ORTHO05D006954 2.3e-55 219.5 173 65.9
Cfa019836 Carpinus fangiana HOM05D005660 ORTHO05D006954 3.0e-55 219.2 172 64.0
Ah.11g047200 Amaranthus hybridus HOM05D005660 ORTHO05D006954 4.0e-55 218.8 219 54.3
Actinidia31034 Actinidia chinensis HOM05D005660 ORTHO05D009563 1.7e-53 213.4 170 64.1
Phvul.003G178300 Phaseolus vulgaris HOM05D005660 ORTHO05D006954 1.7e-53 213.4 220 53.6
BcaB04g17376 Brassica carinata HOM05D005660 ORTHO05D006954 8.3e-53 211.1 203 54.7
Carub.0001s3813 Capsella rubella HOM05D005660 ORTHO05D006954 8.3e-53 211.1 208 53.4
Haze_18589 Corylus avellana HOM05D005660 ORTHO05D006954 1.8e-52 209.9 181 60.2
Oeu027136.1 Olea europaea HOM05D005660 ORTHO05D006954 1.8e-52 209.9 173 64.2
Haze_18590 Corylus avellana HOM05D005660 ORTHO05D006954 4.1e-52 208.8 181 59.7
AL1G55790 Arabidopsis lyrata HOM05D005660 ORTHO05D006954 4.5e-51 205.3 208 53.8
Cpa.g.c34045 Carica papaya HOM05D005660 ORTHO05D006954 1.3e-50 203.8 174 62.1
AT1G48960 Arabidopsis thaliana HOM05D005660 ORTHO05D006954 1.7e-50 203.4 208 52.9
CARHR038970 Cardamine hirsuta HOM05D005660 ORTHO05D006954 2.3e-50 203.0 210 51.9
Peaxi162Scf00013g00938 Petunia axillaris HOM05D005660 ORTHO05D006954 5.0e-50 201.8 205 52.7
Sp1g35870 Schrenkiella parvula HOM05D005660 ORTHO05D006954 5.0e-50 201.8 206 51.9
BcaNung05017 Brassica carinata HOM05D005660 ORTHO05D006954 1.1e-49 200.7 207 50.7
C06p03690 Brassica napus HOM05D005660 ORTHO05D006954 1.1e-49 200.7 207 50.7
BolC6t35508H Brassica oleracea HOM05D005660 ORTHO05D006954 1.1e-49 200.7 207 50.7
Ca_02656_v3 Cicer arietinum L. HOM05D005660 ORTHO05D006954 1.5e-49 200.3 175 61.1
BraA06t23613Z Brassica rapa HOM05D005660 ORTHO05D006954 4.2e-49 198.7 205 50.2
PSO063G2916 Papaver somniferum HOM05D005660 ORTHO05D006954 4.2e-49 198.7 210 53.3
BcaC08g43100 Brassica carinata HOM05D005660 ORTHO05D006954 1.6e-48 196.8 207 50.2
A06p04080 Brassica napus HOM05D005660 ORTHO05D006954 3.6e-48 195.7 205 49.8
Thhalv10011768m.g Eutrema salsugineum HOM05D005660 ORTHO05D006954 3.6e-48 195.7 207 51.2
BcaC07g37091 Brassica carinata HOM05D005660 ORTHO05D006954 6.1e-48 194.9 206 51.0
A08p04280 Brassica napus HOM05D005660 ORTHO05D006954 6.1e-48 194.9 207 50.7
C08p04550 Brassica napus HOM05D005660 ORTHO05D006954 6.1e-48 194.9 206 51.0
BolC8t47259H Brassica oleracea HOM05D005660 ORTHO05D006954 6.1e-48 194.9 206 51.0
TPR.G27758 Trifolium pratense HOM05D005660 ORTHO05D006954 1.0e-47 194.1 188 57.4
arahy.Tifrunner.gnm1.ann1.K4DBIV Arachis hypogaea HOM05D005660 ORTHO05D006954 1.2e-46 190.7 180 58.3
vmacro17684 Vaccinium macrocarpon HOM05D005660 ORTHO05D006954 2.6e-46 189.5 170 60.0
Aa31LG10G4970 Aethionema arabicum HOM05D005660 ORTHO05D006954 5.7e-46 188.3 206 50.5
PSO782G0127 Papaver somniferum HOM05D005660 ORTHO05D006954 7.5e-46 188.0 210 51.4
VMungo1215G2351 Vigna mungo HOM05D005660 ORTHO05D006954 9.8e-46 187.6 288 42.7
BraA08t32455Z Brassica rapa HOM05D005660 ORTHO05D006954 6.3e-45 184.9 207 49.3
DCAR_011337 Daucus carota HOM05D005660 ORTHO05D006954 6.3e-45 184.9 174 58.6
Sc12g0006810 Simmondsia chinensis HOM05D005660 ORTHO05D006954 8.3e-45 184.5 190 49.5
TAR629G1816 Trochodendron aralioides HOM05D005660 ORTHO05D006954 8.3e-45 184.5 192 50.0
TAR622G0544 Trochodendron aralioides HOM05D005660 ORTHO05D006954 4.1e-44 182.2 205 50.2
AUR62032180 Chenopodium quinoa HOM05D005660 ORTHO05D006954 7.0e-44 181.4 181 51.9
GSVIVG01008223001 Vitis vinifera HOM05D005660 ORTHO05D006954 2.3e-42 176.4 203 49.8
THA.LOC104820410 Tarenaya hassleriana HOM05D005660 ORTHO05D006954 1.9e-41 173.3 234 44.4
Duzib084G1344 Durio zibethinus HOM05D005660 ORTHO05D006954 5.6e-41 171.8 203 48.3
Rhsim08G0138400 Rhododendron simsii HOM05D005660 ORTHO05D006954 4.4e-38 162.2 123 64.2
MBI16_g23748_MAGBIO Magnolia biondii HOM05D005660 ORTHO05D006954 4.9e-37 158.7 168 51.8
CAN.G587.76 Capsicum annuum HOM05D005660 ORTHO05D006954 1.4e-36 157.1 115 67.0
Nn4g23692 Nelumbo nucifera HOM05D005660 ORTHO05D006954 4.1e-36 155.6 199 46.2
Sabra12G0040900 Salix brachista HOM05D005660 ORTHO05D006954 7.0e-36 154.8 117 70.9
Cpa.g.sc13.65 Carica papaya HOM05D005660 ORTHO05D006954 1.2e-35 154.1 115 68.7
Lalb_Chr13g0302411 Lupinus albus HOM05D005660 ORTHO05D006954 8.6e-34 147.9 115 62.6
Phvul.009G201000 Phaseolus vulgaris HOM05D005660 ORTHO05D006954 1.1e-33 147.5 144 58.3
AUR62036940 Chenopodium quinoa HOM05D005660 ORTHO05D006954 6.2e-32 141.7 119 59.7
HPP92_011590 Vanilla planifolia HOM05D005660 ORTHO05D006954 1.2e-30 137.5 176 45.5
ATR0598G023 Amborella trichopoda HOM05D005660 ORTHO05D006954 6.4e-29 131.7 152 51.3
Sopen03g038700 Solanum pennellii HOM05D005660 ORTHO05D006954 5.4e-28 128.6 112 60.7
SEGI_40774 Sequoiadendron giganteum HOM05D005660 ORTHO05D006954 8.6e-26 121.3 149 46.3
Zm00001eb126330 Zea mays HOM05D005660 ORTHO05D006954 4.7e-24 115.5 116 51.7
AagrBONN_evm.TU.Sc2ySwM_362.1267 Anthoceros agrestis HOM05D005660 ORTHO05D006954 1.3e-21 107.5 170 39.4
FAN13G2173 Fragaria x ananassa HOM05D005660 ORTHO05D006954 7.1e-20 101.7 98 60.2
CDE07G0562 Ceratophyllum demersum HOM05D005660 ORTHO05D006954 3.5e-19 99.4 164 37.2
Lalb_Chr13g0302401 Lupinus albus HOM05D005660 ORTHO05D006954 5.6e-17 92.0 91 51.6
PGSC0003DMG400005618 Solanum tuberosum HOM05D005660 ORTHO05D006954 1.4e-15 87.4 80 57.5
Sabra12G0040800 Salix brachista HOM05D005660 ORTHO05D006954 1.7e-13 80.5 95 43.2
Solyc06g069270.1 Solanum lycopersicum HOM05D005660 ORTHO05D006954 1.7e-13 80.5 57 66.7
Mapoly0056s0094 Marchantia polymorpha HOM05D001012 ORTHO05D004721 1.5e-09 67.4 153 30.7
RcHm_v2.0_Chr5g0042351 Rosa chinensis HOM05D005660 ORTHO05D006954 4.3e-09 65.9 41 73.2
RcHm_v2.0_Chr4g0434591 Rosa chinensis HOM05D005660 ORTHO05D006954 5.6e-09 65.5 40 75.0
Phvul.003G182600 Phaseolus vulgaris HOM05D001012 ORTHO05D002597 7.3e-09 65.1 112 33.9
SEGI_13166 Sequoiadendron giganteum HOM05D001012 ORTHO05D002597 8.1e-08 61.6 153 26.8
Cpa.g.sc1.163 Carica papaya HOM05D001012 ORTHO05D002597 1.4e-07 60.8 148 28.4
Glyma.17G081300 Glycine max HOM05D001012 ORTHO05D002597 1.4e-07 60.8 110 32.7
Medtr4g109880 Medicago truncatula HOM05D001012 ORTHO05D002597 1.8e-07 60.5 111 32.4
ATR0827G156 Amborella trichopoda HOM05D001012 ORTHO05D002597 3.1e-07 59.7 104 32.7
Lalb_Chr10g0099111 Lupinus albus HOM05D001012 ORTHO05D002597 3.1e-07 59.7 147 26.5
TPR.G2008 Trifolium pratense HOM05D001012 ORTHO05D002597 3.1e-07 59.7 111 31.5
SMO145G0122 Selaginella moellendorffii HOM05D001012 ORTHO05D002597 6.9e-07 58.5 152 28.3
Lj4g0006717 Lotus japonicus HOM05D001012 ORTHO05D002597 9.0e-07 58.2 111 29.7
SEGI_12548 Sequoiadendron giganteum HOM05D001012 ORTHO05D004721 9.0e-07 58.2 154 28.6
SEGI_33553 Sequoiadendron giganteum HOM05D001012 ORTHO05D004721 9.0e-07 58.2 142 27.5
FAN08G2332 Fragaria x ananassa HOM05D001012 ORTHO05D002597 1.5e-06 57.4 103 34.0
Gohir.D11G037100 Gossypium hirsutum HOM05D001012 ORTHO05D002597 2.6e-06 56.6 113 33.6
VMungo1215G2649 Vigna mungo HOM05D001012 ORTHO05D002597 2.6e-06 56.6 111 31.5
Gorai.007G039900 Gossypium raimondii HOM05D001012 ORTHO05D002597 3.4e-06 56.2 113 33.6
Hund02547 Selenicereus undatus HOM05D001012 ORTHO05D002597 3.4e-06 56.2 113 28.3
Hund27022 Selenicereus undatus HOM05D001012 ORTHO05D004721 3.4e-06 56.2 144 27.1
Gohir.A11G033700 Gossypium hirsutum HOM05D001012 ORTHO05D002597 4.4e-06 55.8 113 34.5
Ca_21759_v3 Cicer arietinum L. HOM05D001012 ORTHO05D002597 5.8e-06 55.5 103 31.1
SMO367G0084 Selaginella moellendorffii HOM05D001012 ORTHO05D004721 5.8e-06 55.5 113 31.9
ECA247G3211 Erigeron canadensis HOM05D001012 ORTHO05D002597 7.6e-06 55.1 147 26.5
Aa31LG2G6980 Aethionema arabicum HOM05D000042 ORTHO05D002597 9.9e-06 54.7 155 27.7


User provided reference genes

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