Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0025700 Sechium edule HOM05D005649 ORTHO05D006837 8.4e-48 193.4 97 100.0
MELO3C006883.2 Cucumis melo HOM05D005649 ORTHO05D006837 1.6e-27 125.9 90 68.9
CsaV3_3G016880 Cucumis sativus L. HOM05D005649 ORTHO05D006837 6.2e-27 124.0 90 68.9
Sed0000609 Sechium edule HOM05D005649 ORTHO05D006837 1.1e-23 113.2 88 65.9
COL.COLO4_14273 Corchorus olitorius HOM05D005649 ORTHO05D006837 8.2e-19 97.1 93 54.8
Gohir.D09G040900 Gossypium hirsutum HOM05D005649 ORTHO05D006837 5.3e-18 94.4 90 55.6
Hma1.2p1_1323F.1_g275520 Hydrangea macrophylla HOM05D005649 ORTHO05D006837 1.2e-17 93.2 81 59.3
Solyc06g035820.1 Solanum lycopersicum HOM05D005649 ORTHO05D006837 1.2e-17 93.2 95 50.5
DCAR_018179 Daucus carota HOM05D005649 ORTHO05D006837 2.0e-17 92.4 82 56.1
Potri.015G139100 Populus trichocarpa HOM05D005649 ORTHO05D006837 2.0e-17 92.4 94 56.4
Potri.012G137400 Populus trichocarpa HOM05D005649 ORTHO05D006837 2.6e-17 92.0 94 53.2
PGR042G0682 Punica granatum HOM05D005649 ORTHO05D006837 5.8e-17 90.9 93 54.8
Dinv35188 Davidia involucrata HOM05D005649 ORTHO05D006837 7.6e-17 90.5 92 51.1
Eucgr.K00231 Eucalyptus grandis HOM05D005649 ORTHO05D006837 7.6e-17 90.5 85 55.3
Duzib068G0970 Durio zibethinus HOM05D005649 ORTHO05D006837 1.3e-16 89.7 68 64.7
Sabra15G0150200 Salix brachista HOM05D005649 ORTHO05D006837 1.3e-16 89.7 92 56.5
CANSAT21G0877 Cannabis sativa HOM05D005649 ORTHO05D006837 3.8e-16 88.2 79 55.7
Haze_13744 Corylus avellana HOM05D005649 ORTHO05D006837 6.5e-16 87.4 97 49.5
TWI63G0636 Tripterygium wilfordii HOM05D005649 ORTHO05D006837 6.5e-16 87.4 85 45.9
Actinidia03109 Actinidia chinensis HOM05D005649 ORTHO05D006837 8.4e-16 87.0 79 54.4
Nitab4.5_0004480g0060 Nicotiana tabacum HOM05D005649 ORTHO05D006837 8.4e-16 87.0 92 51.1
DCAR_018177 Daucus carota HOM05D005649 ORTHO05D006837 1.1e-15 86.7 82 52.4
Glyma.09G144000 Glycine max HOM05D005649 ORTHO05D006837 1.4e-15 86.3 90 53.3
Lalb_Chr19g0130991 Lupinus albus HOM05D005649 ORTHO05D006837 1.4e-15 86.3 85 56.5
Oeu062770.1 Olea europaea HOM05D005649 ORTHO05D006837 1.4e-15 86.3 79 53.2
Atru.chr1.509 Acer truncatum HOM05D005649 ORTHO05D006837 1.9e-15 85.9 101 47.5
THA.LOC109117151 Tarenaya hassleriana HOM05D005649 ORTHO05D006837 1.9e-15 85.9 81 54.3
CSS0017664 Camellia sinensis var. sinensis HOM05D005649 ORTHO05D006837 2.5e-15 85.5 91 49.5
SalBow2G3129 Salvia bowleyana HOM05D005649 ORTHO05D006837 2.5e-15 85.5 76 55.3
CiPaw.04G066700 Carya illinoinensis HOM05D005649 ORTHO05D006837 3.2e-15 85.1 89 49.4
Lalb_Chr01g0009161 Lupinus albus HOM05D005649 ORTHO05D006837 3.2e-15 85.1 85 55.3
Duzib084G1193 Durio zibethinus HOM05D005649 ORTHO05D006837 4.2e-15 84.7 82 51.2
Gohir.A11G009800 Gossypium hirsutum HOM05D005649 ORTHO05D006837 4.2e-15 84.7 83 51.8
Gohir.D11G009100 Gossypium hirsutum HOM05D005649 ORTHO05D006837 4.2e-15 84.7 83 51.8
Gorai.007G010700 Gossypium raimondii HOM05D005649 ORTHO05D006837 4.2e-15 84.7 83 51.8
Medtr1g101360 Medicago truncatula HOM05D005649 ORTHO05D006837 4.2e-15 84.7 81 53.1
RcHm_v2.0_Chr1g0376811 Rosa chinensis HOM05D005649 ORTHO05D006837 4.2e-15 84.7 83 50.6
EL10Ac3g05710 Beta vulgaris HOM05D005649 ORTHO05D006837 7.1e-15 84.0 79 51.9
Psat0s6119g0040 Pisum sativum HOM05D005649 ORTHO05D006837 7.1e-15 84.0 84 56.0
Migut.F00365 Erythranthe guttata HOM05D005649 ORTHO05D006837 9.3e-15 83.6 90 48.9
Manes.14G028300 Manihot esculenta HOM05D005649 ORTHO05D006837 9.3e-15 83.6 78 51.3
Peaxi162Scf00040g00425 Petunia axillaris HOM05D005649 ORTHO05D006837 9.3e-15 83.6 89 52.8
Phvul.004G120100 Phaseolus vulgaris HOM05D005649 ORTHO05D006837 1.2e-14 83.2 81 55.6
DCAR_014595 Daucus carota HOM05D005649 ORTHO05D006837 1.6e-14 82.8 79 49.4
Migut.F01138 Erythranthe guttata HOM05D005649 ORTHO05D006837 1.6e-14 82.8 87 51.7
Prupe.2G290900 Prunus persica HOM05D005649 ORTHO05D006837 1.6e-14 82.8 80 51.2
PGSC0003DMG400004517 Solanum tuberosum HOM05D000087 ORTHO05D000439 1.6e-14 82.8 71 53.5
Thecc.03G171600 Theobroma cacao HOM05D005649 ORTHO05D006837 1.6e-14 82.8 80 53.8
AUR62021224 Chenopodium quinoa HOM05D005649 ORTHO05D006837 2.1e-14 82.4 70 58.6
Sc13g0008480 Simmondsia chinensis HOM05D005649 ORTHO05D006837 2.7e-14 82.0 80 50.0
TAR629G2474 Trochodendron aralioides HOM05D005649 ORTHO05D006837 2.7e-14 82.0 89 46.1
CAN.G769.4 Capsicum annuum HOM05D005649 ORTHO05D006837 3.5e-14 81.6 91 50.5
Ciclev10006307m.g Citrus clementina HOM05D005649 ORTHO05D006837 3.5e-14 81.6 79 46.8
Lj2g0004156 Lotus japonicus HOM05D005649 ORTHO05D006837 3.5e-14 81.6 84 57.1
Actinidia34088 Actinidia chinensis HOM05D005649 ORTHO05D006837 4.6e-14 81.3 71 52.1
AL8G38860 Arabidopsis lyrata HOM05D005649 ORTHO05D006837 4.6e-14 81.3 88 45.5
AT5G62080 Arabidopsis thaliana HOM05D005649 ORTHO05D006837 4.6e-14 81.3 88 45.5
CAN.G166.5 Capsicum annuum HOM05D005649 ORTHO05D006837 4.6e-14 81.3 91 48.4
SalBow6G0552 Salvia bowleyana HOM05D000001 ORTHO05D010467 4.6e-14 81.3 61 62.3
SGA_v2.0_scaffold10G05368 Striga asiatica HOM05D005649 ORTHO05D006837 4.6e-14 81.3 90 46.7
Aqoxy7G00428 Aquilegia oxysepala HOM05D005649 ORTHO05D006837 6.0e-14 80.9 92 48.9
SalBow6G6599 Salvia bowleyana HOM05D000001 ORTHO05D010467 6.0e-14 80.9 61 60.7
TPR.G17428 Trifolium pratense HOM05D005649 ORTHO05D006837 7.9e-14 80.5 95 53.7
Aa31LG3G8540 Aethionema arabicum HOM05D005649 ORTHO05D006837 1.0e-13 80.1 87 46.0
CiPaw.03G103300 Carya illinoinensis HOM05D005649 ORTHO05D006837 1.0e-13 80.1 79 49.4
Gohir.A12G260100 Gossypium hirsutum HOM05D005649 ORTHO05D006837 1.0e-13 80.1 87 55.2
AUR62016019 Chenopodium quinoa HOM05D005649 ORTHO05D006837 1.3e-13 79.7 76 51.3
FvH4_7g29091 Fragaria vesca HOM05D005649 ORTHO05D006837 1.3e-13 79.7 97 41.2
FAN03G0279 Fragaria x ananassa HOM05D005649 ORTHO05D006837 1.3e-13 79.7 97 41.2
Nitab4.5_0002107g0070 Nicotiana tabacum HOM05D005649 ORTHO05D006837 1.3e-13 79.7 91 46.2
Gohir.D12G260900 Gossypium hirsutum HOM05D005649 ORTHO05D006837 1.8e-13 79.3 87 55.2
Gorai.008G279600 Gossypium raimondii HOM05D005649 ORTHO05D006837 1.8e-13 79.3 87 55.2
QL09p014765 Quercus lobata HOM05D005649 ORTHO05D006837 1.8e-13 79.3 94 43.6
C09p41580 Brassica napus HOM05D005649 ORTHO05D006837 2.3e-13 79.0 80 50.0
CARHR265080 Cardamine hirsuta HOM05D005649 ORTHO05D006837 3.0e-13 78.6 85 51.8
Carub.0008s2276 Capsella rubella HOM05D005649 ORTHO05D006837 3.9e-13 78.2 90 42.2
CARHR275870 Cardamine hirsuta HOM05D005649 ORTHO05D006837 3.9e-13 78.2 63 52.4
Glyma.16G197100 Glycine max HOM05D005649 ORTHO05D006837 3.9e-13 78.2 88 48.9
HanXRQChr14g0462161 Helianthus annuus HOM05D005649 ORTHO05D006837 3.9e-13 78.2 88 45.5
HPP92_025495 Vanilla planifolia HOM05D005649 ORTHO05D006837 3.9e-13 78.2 81 50.6
Ah.07g209060 Amaranthus hybridus HOM05D005649 ORTHO05D006837 5.1e-13 77.8 88 50.0
Carub.0008s1225 Capsella rubella HOM05D005649 ORTHO05D006837 5.1e-13 77.8 63 61.9
Sp2g25250 Schrenkiella parvula HOM05D005649 ORTHO05D006837 5.1e-13 77.8 86 41.9
Sp6g14410 Schrenkiella parvula HOM05D005649 ORTHO05D006837 5.1e-13 77.8 87 44.8
Aa31LG2G14300 Aethionema arabicum HOM05D005649 ORTHO05D006837 6.7e-13 77.4 87 43.7
CAN.G28.8 Capsicum annuum HOM05D005649 ORTHO05D006837 6.7e-13 77.4 93 43.0
Ca_10790_v3 Cicer arietinum L. HOM05D005649 ORTHO05D006837 6.7e-13 77.4 95 50.5
BolC9t57041H Brassica oleracea HOM05D005649 ORTHO05D006837 8.7e-13 77.0 78 50.0
CARHR205910 Cardamine hirsuta HOM05D005649 ORTHO05D006837 8.7e-13 77.0 79 49.4
HPP92_025369 Vanilla planifolia HOM05D005649 ORTHO05D006837 8.7e-13 77.0 77 53.2
AL6G17460 Arabidopsis lyrata HOM05D005649 ORTHO05D006837 1.1e-12 76.6 79 49.4
AL8G26550 Arabidopsis lyrata HOM05D005649 ORTHO05D006837 1.1e-12 76.6 79 51.9
Cpa.g.sc107.18 Carica papaya HOM05D005649 ORTHO05D006837 1.5e-12 76.3 88 42.0
Sp6g35660 Schrenkiella parvula HOM05D005649 ORTHO05D006837 1.5e-12 76.3 92 42.4
Solyc01g009590.3 Solanum lycopersicum HOM05D005649 ORTHO05D006837 1.5e-12 76.3 66 48.5
Solyc03g026115.1 Solanum lycopersicum HOM05D005649 ORTHO05D006837 1.5e-12 76.3 90 46.7
CDE11G0782 Ceratophyllum demersum HOM05D005649 ORTHO05D006837 1.9e-12 75.9 92 45.7
Thhalv10005193m.g Eutrema salsugineum HOM05D005649 ORTHO05D006837 1.9e-12 75.9 94 42.6
Sopen01g005120 Solanum pennellii HOM05D005649 ORTHO05D006837 1.9e-12 75.9 70 47.1
C03p18480 Brassica napus HOM05D005649 ORTHO05D006837 2.5e-12 75.5 71 52.1
Thhalv10015126m.g Eutrema salsugineum HOM05D005649 ORTHO05D006837 2.5e-12 75.5 92 45.7
MD01G1197500 Malus domestica HOM05D005649 ORTHO05D006837 2.5e-12 75.5 79 45.6
AT5G52160 Arabidopsis thaliana HOM05D005649 ORTHO05D006837 4.3e-12 74.7 88 50.0
A10p09850 Brassica napus HOM05D005649 ORTHO05D006837 4.3e-12 74.7 83 47.0
BraA10t43066Z Brassica rapa HOM05D005649 ORTHO05D006837 4.3e-12 74.7 83 47.0
Nn8g41026 Nelumbo nucifera HOM05D005649 ORTHO05D006837 4.3e-12 74.7 78 43.6
BraA03t10871Z Brassica rapa HOM05D005649 ORTHO05D006837 5.7e-12 74.3 87 43.7
Carub.0006s0617 Capsella rubella HOM05D005649 ORTHO05D006837 5.7e-12 74.3 63 54.0
AT5G07230 Arabidopsis thaliana HOM05D005649 ORTHO05D006837 7.4e-12 73.9 90 45.6
BcaB01g04189 Brassica carinata HOM05D005649 ORTHO05D006837 7.4e-12 73.9 87 43.7
Lsat_1_v5_gn_2_132960 Lactuca sativa HOM05D005649 ORTHO05D006837 7.4e-12 73.9 93 45.2
PSO478G4859 Papaver somniferum HOM05D005649 ORTHO05D006837 7.4e-12 73.9 83 41.0
BcaC01g06166 Brassica carinata HOM05D005649 ORTHO05D006837 9.7e-12 73.6 87 43.7
BcaC01g06170 Brassica carinata HOM05D005649 ORTHO05D006837 9.7e-12 73.6 87 43.7
BcaC06g32460 Brassica carinata HOM05D005649 ORTHO05D006837 9.7e-12 73.6 63 54.0
A10p28990 Brassica napus HOM05D005649 ORTHO05D006837 9.7e-12 73.6 80 47.5
C09p69350 Brassica napus HOM05D005649 ORTHO05D006837 9.7e-12 73.6 80 47.5
BolC3t14245H Brassica oleracea HOM05D005649 ORTHO05D006837 9.7e-12 73.6 87 43.7
BolC9t59679H Brassica oleracea HOM05D005649 ORTHO05D006837 9.7e-12 73.6 80 47.5
BraA10t44947Z Brassica rapa HOM05D005649 ORTHO05D006837 9.7e-12 73.6 80 47.5
Thhalv10015124m.g Eutrema salsugineum HOM05D005649 ORTHO05D006837 9.7e-12 73.6 63 57.1
A03p15810 Brassica napus HOM05D005649 ORTHO05D006837 1.6e-11 72.8 80 47.5
PSO782G2995 Papaver somniferum HOM05D005649 ORTHO05D006837 2.2e-11 72.4 84 44.0
PSO782G3448 Papaver somniferum HOM05D005649 ORTHO05D006837 2.8e-11 72.0 83 39.8
ATR0757G068 Amborella trichopoda HOM05D005649 ORTHO05D006837 3.7e-11 71.6 76 50.0
BcaB08g35564 Brassica carinata HOM05D005649 ORTHO05D006837 4.8e-11 71.2 62 56.5
Nn1g01375 Nelumbo nucifera HOM05D005649 ORTHO05D006837 6.3e-11 70.9 97 44.3
Cc02_g03310 Coffea canephora HOM05D005649 ORTHO05D006837 1.1e-10 70.1 94 40.4
Peaxi162Scf00132g01516 Petunia axillaris HOM05D005649 ORTHO05D006837 1.1e-10 70.1 84 47.6
FAN03G1726 Fragaria x ananassa HOM05D005649 ORTHO05D006837 4.1e-10 68.2 52 57.7
Zm00001eb198610 Zea mays HOM05D005649 ORTHO05D006837 1.7e-08 62.8 59 45.8
TAR636G3290 Trochodendron aralioides HOM05D000087 ORTHO05D000439 2.2e-08 62.4 80 42.5
Os08g0546300 Oryza sativa ssp. japonica HOM05D005649 ORTHO05D006837 3.8e-08 61.6 59 42.4
Aa31LG2G14360 Aethionema arabicum HOM05D005649 ORTHO05D006837 5.5e-07 57.8 80 41.2
Os09g0525500 Oryza sativa ssp. japonica HOM05D005649 ORTHO05D006837 9.3e-07 57.0 71 43.7
Aa31LG2G14310 Aethionema arabicum HOM05D005649 ORTHO05D006837 1.2e-06 56.6 80 38.8
PSO782G4359 Papaver somniferum HOM05D005649 ORTHO05D006837 1.6e-06 56.2 86 32.6
SEGI_28459 Sequoiadendron giganteum HOM05D005649 ORTHO05D006837 3.6e-06 55.1 72 36.1
Zm00001eb319020 Zea mays HOM05D005649 ORTHO05D006837 4.6e-06 54.7 78 39.7


User provided reference genes

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