Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0025698 Sechium edule HOM05D005286 ORTHO05D006348 4.3e-295 1017.3 537 100.0
ClCG04G002290 Citrullus lanatus HOM05D005286 ORTHO05D006348 1.3e-235 819.7 475 87.2
MELO3C008897.2 Cucumis melo HOM05D005286 ORTHO05D006348 5.2e-232 807.7 475 85.9
CsaV3_4G030380 Cucumis sativus L. HOM05D005286 ORTHO05D006348 1.7e-227 792.7 475 84.0
CiPaw.03G118000 Carya illinoinensis HOM05D005286 ORTHO05D006348 1.2e-191 673.7 475 71.8
QL10p041275 Quercus lobata HOM05D005286 ORTHO05D006348 4.2e-189 665.2 474 71.9
TAR625G0087 Trochodendron aralioides HOM05D005286 ORTHO05D006348 3.6e-185 652.1 475 70.5
Prupe.4G274700 Prunus persica HOM05D005286 ORTHO05D006348 4.8e-185 651.7 476 69.3
Ciclev10000962m.g Citrus clementina HOM05D005286 ORTHO05D006348 1.8e-184 649.8 477 71.3
MD15G1135000 Malus domestica HOM05D005286 ORTHO05D006348 7.6e-183 644.4 478 69.2
Cfa021278 Carpinus fangiana HOM05D005286 ORTHO05D006348 3.2e-181 639.0 477 69.6
CSS0034769 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 3.5e-180 635.6 443 73.1
GSVIVG01022340001 Vitis vinifera HOM05D005286 ORTHO05D006348 6.0e-180 634.8 474 68.6
CSS0004303 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 1.3e-179 633.6 443 73.1
Atru.chr4.988 Acer truncatum HOM05D005286 ORTHO05D006348 3.0e-179 632.5 475 68.0
Actinidia16523 Actinidia chinensis HOM05D005286 ORTHO05D006348 3.0e-179 632.5 478 69.0
Lalb_Chr23g0272691 Lupinus albus HOM05D005286 ORTHO05D006348 8.7e-179 630.9 461 69.8
Thecc.01G137300 Theobroma cacao HOM05D005286 ORTHO05D006348 2.8e-177 625.9 479 68.1
Glyma.06G155750 Glycine max HOM05D005286 ORTHO05D006348 1.8e-176 623.2 484 66.5
Manes.12G159000 Manihot esculenta HOM05D005286 ORTHO05D006348 2.4e-176 622.9 476 67.6
Duzib187G0999 Durio zibethinus HOM05D005286 ORTHO05D006348 3.1e-176 622.5 526 62.5
Duzib147G1331 Durio zibethinus HOM05D005286 ORTHO05D006348 5.3e-176 621.7 498 65.7
Potri.007G101600 Populus trichocarpa HOM05D005286 ORTHO05D006348 5.3e-176 621.7 477 67.9
Lj4A421T8 Lonicera japonica HOM05D005286 ORTHO05D006348 6.9e-176 621.3 457 69.6
Gohir.A12G085400 Gossypium hirsutum HOM05D005286 ORTHO05D006348 1.2e-175 620.5 479 66.8
FvH4_1g24860 Fragaria vesca HOM05D005286 ORTHO05D006348 2.0e-175 619.8 477 65.6
FAN19G2916 Fragaria x ananassa HOM05D005286 ORTHO05D006348 2.0e-175 619.8 477 65.6
Nn1g08960 Nelumbo nucifera HOM05D005286 ORTHO05D006348 2.0e-175 619.8 442 70.1
RcHm_v2.0_Chr2g0122521 Rosa chinensis HOM05D005286 ORTHO05D006348 2.6e-175 619.4 475 65.3
arahy.Tifrunner.gnm1.ann1.7K8RK5 Arachis hypogaea HOM05D005286 ORTHO05D006348 3.4e-175 619.0 481 66.5
TPR.G33580 Trifolium pratense HOM05D005286 ORTHO05D006348 3.4e-175 619.0 452 69.5
Ca_16981_v3 Cicer arietinum L. HOM05D005286 ORTHO05D006348 4.5e-175 618.6 484 66.3
VMungo1309G1016 Vigna mungo HOM05D005286 ORTHO05D006348 5.8e-175 618.2 454 68.1
Lj1g0003788 Lotus japonicus HOM05D003519 ORTHO05D004443 9.9e-175 617.5 455 70.1
Oeu037874.1 Olea europaea HOM05D005286 ORTHO05D006348 1.3e-174 617.1 478 66.9
FAN26G1990 Fragaria x ananassa HOM05D005286 ORTHO05D006348 1.7e-174 616.7 477 65.4
Medtr3g096675 Medicago truncatula HOM05D005286 ORTHO05D006348 1.7e-174 616.7 482 66.2
arahy.Tifrunner.gnm1.ann1.ZN9YLD Arachis hypogaea HOM05D005286 ORTHO05D006348 2.2e-174 616.3 481 66.3
Sabra07G0083800 Salix brachista HOM05D005286 ORTHO05D006348 2.2e-174 616.3 477 67.5
Gohir.D12G083400 Gossypium hirsutum HOM05D005286 ORTHO05D006348 4.9e-174 615.1 479 66.6
THA.LOC104819345 Tarenaya hassleriana HOM05D005286 ORTHO05D006348 6.4e-174 614.8 465 67.3
FAN28G1250 Fragaria x ananassa HOM05D005286 ORTHO05D006348 1.4e-173 613.6 477 65.0
FAN23G2334 Fragaria x ananassa HOM05D005286 ORTHO05D006348 1.9e-173 613.2 477 65.0
CAN.G1104.7 Capsicum annuum HOM05D005286 ORTHO05D006348 4.2e-173 612.1 478 65.5
Rhsim08G0000400 Rhododendron simsii HOM05D005286 ORTHO05D006348 1.2e-172 610.5 474 67.1
TWI75G1712 Tripterygium wilfordii HOM05D005286 ORTHO05D006348 2.1e-172 609.8 476 65.5
CANSAT35G0194 Cannabis sativa HOM05D005286 ORTHO05D006348 3.5e-172 609.0 477 65.2
Migut.H00797 Erythranthe guttata HOM05D005286 ORTHO05D006348 4.6e-172 608.6 445 70.1
Gorai.008G094500 Gossypium raimondii HOM05D005286 ORTHO05D006348 2.3e-171 606.3 493 64.7
MSTRG.23499 Avicennia marina HOM05D005286 ORTHO05D006348 3.0e-171 605.9 477 66.2
Phvul.009G154600 Phaseolus vulgaris HOM05D005286 ORTHO05D006348 3.0e-171 605.9 482 64.7
PGR119G0364 Punica granatum HOM05D005286 ORTHO05D006348 5.1e-171 605.1 487 63.7
vmacro18685 Vaccinium macrocarpon HOM05D005286 ORTHO05D006348 1.5e-170 603.6 475 66.1
Peaxi162Scf00151g00811 Petunia axillaris HOM05D005286 ORTHO05D006348 7.4e-170 601.3 505 62.6
Potri.007G101700 Populus trichocarpa HOM05D005286 ORTHO05D006348 1.3e-169 600.5 475 65.3
Aqoxy5G02419 Aquilegia oxysepala HOM05D005286 ORTHO05D006348 3.7e-169 599.0 479 64.7
Hma1.2p1_3117F.1_g332810 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 3.7e-169 599.0 495 64.0
AL8G41150 Arabidopsis lyrata HOM05D005286 ORTHO05D006348 4.8e-169 598.6 479 63.9
Solyc12g088020.1 Solanum lycopersicum HOM05D005286 ORTHO05D006348 6.2e-169 598.2 476 63.4
AT5G63910 Arabidopsis thaliana HOM05D005286 ORTHO05D006348 1.4e-168 597.0 445 66.7
Sopen12g030050 Solanum pennellii HOM05D005286 ORTHO05D006348 1.4e-168 597.0 476 63.7
A06p30530 Brassica napus HOM05D005286 ORTHO05D006348 3.1e-168 595.9 445 65.6
BraA06t26002Z Brassica rapa HOM05D005286 ORTHO05D006348 3.1e-168 595.9 445 65.6
THA.LOC104818420 Tarenaya hassleriana HOM05D005286 ORTHO05D006348 5.3e-168 595.1 475 63.8
Sc09g0002230 Simmondsia chinensis HOM05D005286 ORTHO05D006348 9.0e-168 594.3 444 67.1
BcaB02g09762 Brassica carinata HOM05D005286 ORTHO05D006348 2.0e-167 593.2 444 66.2
SGA_v2.0_scaffold189G40378 Striga asiatica HOM05D005286 ORTHO05D006348 2.0e-167 593.2 477 65.8
Aa31LG1G17980 Aethionema arabicum HOM05D005286 ORTHO05D006348 2.6e-167 592.8 446 67.3
C03p62500 Brassica napus HOM05D005286 ORTHO05D006348 2.6e-167 592.8 478 62.6
BolC3t18507H Brassica oleracea HOM05D005286 ORTHO05D006348 2.6e-167 592.8 478 62.6
CARHR277830 Cardamine hirsuta HOM05D005286 ORTHO05D006348 2.6e-167 592.8 448 65.4
Lsat_1_v5_gn_1_78000 Lactuca sativa HOM05D005286 ORTHO05D006348 2.6e-167 592.8 443 67.7
PGSC0003DMG400045338 Solanum tuberosum HOM05D005286 ORTHO05D006348 7.6e-167 591.3 476 63.7
BcaC01g02644 Brassica carinata HOM05D005286 ORTHO05D006348 1.3e-166 590.5 476 62.6
Hund21799 Selenicereus undatus HOM05D005286 ORTHO05D006348 3.8e-166 589.0 501 60.1
Cc07_g21020 Coffea canephora HOM05D005286 ORTHO05D006348 8.4e-166 587.8 446 68.2
Ah.06g191030 Amaranthus hybridus HOM05D005286 ORTHO05D006348 1.9e-165 586.6 449 65.5
Sp2g26980 Schrenkiella parvula HOM05D005286 ORTHO05D006348 1.9e-165 586.6 445 64.5
ECA248G0233 Erigeron canadensis HOM05D005286 ORTHO05D006348 7.1e-165 584.7 444 66.7
Carub.0008s2471 Capsella rubella HOM05D005286 ORTHO05D006348 9.3e-165 584.3 476 62.4
EL10Ac4g09623 Beta vulgaris HOM05D005286 ORTHO05D006348 6.7e-163 578.2 477 62.5
HanXRQChr01g0017141 Helianthus annuus HOM05D005286 ORTHO05D006348 1.3e-161 573.9 443 65.5
Nitab4.5_0000954g0020 Nicotiana tabacum HOM05D005286 ORTHO05D006348 3.7e-161 572.4 443 67.5
CSS0028284 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 6.3e-161 571.6 398 72.1
PSO170G0528 Papaver somniferum HOM05D005286 ORTHO05D006348 4.2e-157 558.9 462 62.1
ATR0138G018 Amborella trichopoda HOM05D005286 ORTHO05D006348 4.6e-156 555.4 447 64.7
Thhalv10004131m.g Eutrema salsugineum HOM05D005286 ORTHO05D006348 1.5e-154 550.4 476 60.7
HPP92_011629 Vanilla planifolia HOM05D005286 ORTHO05D006348 1.4e-149 533.9 453 61.6
Eucgr.I00123 Eucalyptus grandis HOM05D005286 ORTHO05D006348 1.2e-148 530.8 524 55.2
AUR62006858 Chenopodium quinoa HOM05D005286 ORTHO05D006348 4.6e-148 528.9 398 66.6
AUR62000514 Chenopodium quinoa HOM05D005286 ORTHO05D006348 3.0e-147 526.2 398 66.1
MBI06_g35210_MAGBIO Magnolia biondii HOM05D005286 ORTHO05D006348 3.3e-146 522.7 545 53.9
Nn5g28436 Nelumbo nucifera HOM05D005286 ORTHO05D006348 3.8e-142 509.2 444 59.9
Sabra07G0083900 Salix brachista HOM05D005286 ORTHO05D006348 8.5e-142 508.1 375 68.3
CSS0025452 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 1.4e-141 507.3 475 58.1
Zm00001eb434510 Zea mays HOM05D005286 ORTHO05D006348 3.2e-141 506.1 475 54.9
COL.COLO4_35813 Corchorus olitorius HOM05D005286 ORTHO05D006348 4.2e-141 505.8 479 57.2
Nitab4.5_0000432g0040 Nicotiana tabacum HOM05D005286 ORTHO05D006348 6.5e-134 481.9 473 58.6
Gohir.D12G083401 Gossypium hirsutum HOM05D005286 ORTHO05D006348 9.4e-133 478.0 370 66.5
Hund07236 Selenicereus undatus HOM05D005286 ORTHO05D006348 3.0e-131 473.0 389 61.2
DCAR_019994 Daucus carota HOM05D005286 ORTHO05D006348 1.8e-123 447.2 475 53.1
Psat5g059680 Pisum sativum HOM05D005286 ORTHO05D006348 5.4e-120 435.6 328 67.7
SMO119G0327 Selaginella moellendorffii HOM05D005286 ORTHO05D006348 5.4e-120 435.6 460 52.6
Mapoly0032s0088 Marchantia polymorpha HOM05D005286 ORTHO05D006348 1.9e-117 427.2 443 51.5
QL10p041264 Quercus lobata HOM05D005286 ORTHO05D006348 8.9e-107 391.7 272 71.3
Hma1.2p1_0310F.1_g121020 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 3.2e-96 356.7 229 76.0
SEGI_22884 Sequoiadendron giganteum HOM05D005286 ORTHO05D006348 3.2e-88 330.1 240 67.1
SEGI_35897 Sequoiadendron giganteum HOM05D005286 ORTHO05D006348 3.2e-88 330.1 240 67.1
Haze_10873 Corylus avellana HOM05D005286 ORTHO05D006348 4.1e-88 329.7 296 61.5
Cpa.g.sc37.7 Carica papaya HOM05D005286 ORTHO05D006348 6.6e-86 322.4 273 61.9
Dinv15529 Davidia involucrata HOM05D005286 ORTHO05D006348 2.3e-83 313.9 220 69.5
Dinv24561 Davidia involucrata HOM05D005286 ORTHO05D006348 8.9e-83 312.0 200 74.0
AagrBONN_evm.TU.Sc2ySwM_362.2029 Anthoceros agrestis HOM05D005286 ORTHO05D006348 3.2e-80 303.5 326 50.3
Pp3c3_10560 Physcomitrium patens HOM05D005286 ORTHO05D006348 7.3e-77 292.4 321 48.9
CBR_g8546 Chara braunii HOM05D005286 ORTHO05D006348 1.2e-74 285.0 302 49.0
unitig_748.g8003 Utricularia gibba HOM05D005286 ORTHO05D006348 4.6e-71 273.1 243 60.5
CSS0038762 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 2.1e-68 264.2 215 66.0
DCAR_000205 Daucus carota HOM05D005286 ORTHO05D006348 2.1e-68 264.2 188 68.6
Dinv24565 Davidia involucrata HOM05D005286 ORTHO05D006348 1.2e-66 258.5 201 65.2
QL10p041267 Quercus lobata HOM05D005286 ORTHO05D006348 2.0e-66 257.7 211 63.5
unitig_748.g8002 Utricularia gibba HOM05D005286 ORTHO05D006348 8.4e-65 252.3 205 62.9
CSS0007937 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 1.6e-63 248.1 200 65.0
Oeu039334.1 Olea europaea HOM05D005286 ORTHO05D006348 2.1e-63 247.7 178 70.2
CDE08G1426 Ceratophyllum demersum HOM05D005286 ORTHO05D006348 1.3e-60 238.4 231 54.1
Cpa.g.sc37.6 Carica papaya HOM05D005286 ORTHO05D006348 2.8e-52 210.7 159 66.7
CDE08G1664 Ceratophyllum demersum HOM05D005286 ORTHO05D006348 2.8e-52 210.7 171 60.8
RcHm_v2.0_Chr6g0261231 Rosa chinensis HOM05D005286 ORTHO05D006348 2.4e-51 207.6 171 60.2
CBR_g864 Chara braunii HOM05D005286 ORTHO05D006348 3.1e-43 180.6 421 29.2
PRCOL_00003919 Prasinoderma coloniale HOM05D005286 ORTHO05D006348 6.9e-35 152.9 483 32.3
Nitab4.5_0004530g0050 Nicotiana tabacum HOM05D005286 ORTHO05D006348 4.5e-34 150.2 144 58.3
CSS0025385 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 8.8e-30 136.0 203 44.3
SEGI_37681 Sequoiadendron giganteum HOM05D005286 ORTHO05D006348 3.3e-29 134.0 142 50.0
Nitab4.5_0008592g0010 Nicotiana tabacum HOM05D005286 ORTHO05D006348 5.0e-25 120.2 107 63.6
Os04g0692800 Oryza sativa ssp. japonica HOM05D005286 ORTHO05D006348 5.0e-25 120.2 144 47.2
Cfa022134 Carpinus fangiana HOM05D005286 ORTHO05D006348 6.7e-22 109.8 271 33.2
Glyma.04G210301 Glycine max HOM05D005286 ORTHO05D006348 3.7e-20 104.0 55 90.9
Nitab4.5_0008217g0010 Nicotiana tabacum HOM05D005286 ORTHO05D006348 1.1e-16 92.4 101 49.5
Hma1.2p1_0310F.1_g121040 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 2.1e-15 88.2 61 70.5
CBR_g8549 Chara braunii HOM05D005286 ORTHO05D006348 3.0e-14 84.3 150 37.3
Cre10.g425200 Chlamydomonas reinhardtii HOM05D005286 ORTHO05D006348 4.8e-12 77.0 156 35.3
Oeu039336.1 Olea europaea HOM05D001574 ORTHO05D006348 2.4e-11 74.7 57 59.6
Nitab4.5_0002142g0070 Nicotiana tabacum HOM05D005286 ORTHO05D006348 2.9e-09 67.8 66 56.1
SalBow2G0549 Salvia bowleyana HOM05D002652 ORTHO05D002739 2.9e-09 67.8 73 56.2


User provided reference genes

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