Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0025689 Sechium edule HOM05D007589 ORTHO05D009610 5.5e-91 340.1 968 100.0
ClCG01G013280 Citrullus lanatus HOM05D007589 ORTHO05D009610 7.3e-43 180.3 943 91.8
MELO3C002280.2 Cucumis melo HOM05D007589 ORTHO05D009610 6.2e-42 177.2 943 91.3
CsaV3_1G008640 Cucumis sativus L. HOM05D007589 ORTHO05D009610 9.9e-40 169.9 110 80.0
Thecc.03G018500 Theobroma cacao HOM05D007589 ORTHO05D009610 6.0e-37 160.6 133 61.7
QL10p010870 Quercus lobata HOM05D007589 ORTHO05D009610 3.9e-36 157.9 133 57.1
Thecc.03G017300 Theobroma cacao HOM05D007589 ORTHO05D009610 4.3e-35 154.5 130 60.8
COL.COLO4_30097 Corchorus olitorius HOM05D007589 ORTHO05D009610 5.6e-35 154.1 138 60.1
Dinv38564 Davidia involucrata HOM05D007589 ORTHO05D009610 2.1e-34 152.1 133 57.9
Potri.012G088900 Populus trichocarpa HOM05D007589 ORTHO05D009610 2.8e-34 151.8 133 59.4
TAR629G1736 Trochodendron aralioides HOM05D007589 ORTHO05D009610 6.2e-34 150.6 133 57.1
TAR622G1378 Trochodendron aralioides HOM05D007589 ORTHO05D009610 8.1e-34 150.2 124 63.7
Thecc.03G016900 Theobroma cacao HOM05D007589 ORTHO05D009610 1.1e-33 149.8 133 58.6
Nitab4.5_0003229g0060 Nicotiana tabacum HOM05D007589 ORTHO05D009610 6.9e-33 147.1 201 67.7
MBI16_g14592_MAGBIO Magnolia biondii HOM05D007589 ORTHO05D009610 2.0e-32 145.6 132 54.5
Manes.06G106900 Manihot esculenta HOM05D007589 ORTHO05D009610 2.0e-32 145.6 130 60.8
Duzib205G0427 Durio zibethinus HOM05D007589 ORTHO05D009610 2.6e-32 145.2 132 59.1
Haze_07540 Corylus avellana HOM05D007589 ORTHO05D009610 5.8e-32 144.1 133 60.2
Cfa019165 Carpinus fangiana HOM05D007589 ORTHO05D009610 9.9e-32 143.3 134 59.0
Nitab4.5_0001207g0080 Nicotiana tabacum HOM05D007589 ORTHO05D009610 1.3e-31 142.9 201 67.7
Atru.chr9.2516 Acer truncatum HOM05D007589 ORTHO05D009610 2.2e-31 142.1 135 57.8
CiPaw.11G023600 Carya illinoinensis HOM05D007589 ORTHO05D009610 6.4e-31 140.6 137 58.4
TWI39G0990 Tripterygium wilfordii HOM05D007589 ORTHO05D009610 3.2e-30 138.3 108 63.9
Cpa.g.sc153.3 Carica papaya HOM05D007589 ORTHO05D009610 1.2e-29 136.3 130 59.2
MSTRG.11473 Avicennia marina HOM05D007589 ORTHO05D009610 1.6e-29 136.0 195 66.2
Prupe.5G170700 Prunus persica HOM05D007589 ORTHO05D009610 1.6e-29 136.0 177 76.3
Sabra12G0064000 Salix brachista HOM05D007589 ORTHO05D009610 1.6e-29 136.0 133 52.6
Peaxi162Scf00089g00175 Petunia axillaris HOM05D007589 ORTHO05D009610 2.7e-29 135.2 134 55.2
Gohir.D02G117800 Gossypium hirsutum HOM05D007589 ORTHO05D009610 1.7e-28 132.5 141 52.5
Rhsim08G0174500 Rhododendron simsii HOM05D007589 ORTHO05D009610 1.7e-28 132.5 137 51.8
Gohir.A03G090200 Gossypium hirsutum HOM05D007589 ORTHO05D009610 3.0e-28 131.7 141 52.5
FAN08G2091 Fragaria x ananassa HOM05D007589 ORTHO05D009610 5.1e-28 131.0 183 72.1
Gorai.005G135700 Gossypium raimondii HOM05D007589 ORTHO05D009610 5.1e-28 131.0 141 52.5
CAN.G1166.19 Capsicum annuum HOM05D007589 ORTHO05D009610 6.6e-28 130.6 195 68.2
FvH4_5g05610 Fragaria vesca HOM05D007589 ORTHO05D009610 1.1e-27 129.8 115 61.7
FAN18G2238 Fragaria x ananassa HOM05D007589 ORTHO05D009610 1.1e-27 129.8 115 61.7
Psat4g058560 Pisum sativum HOM05D007589 ORTHO05D009610 1.9e-27 129.0 200 64.0
FAN13G1429 Fragaria x ananassa HOM05D007589 ORTHO05D009610 2.5e-27 128.6 183 71.6
RcHm_v2.0_Chr7g0193201 Rosa chinensis HOM05D007589 ORTHO05D009610 2.5e-27 128.6 115 60.0
CANSAT80G2749 Cannabis sativa HOM05D007589 ORTHO05D009610 3.3e-27 128.3 144 51.4
Nn4g22695 Nelumbo nucifera HOM05D007589 ORTHO05D009610 3.3e-27 128.3 185 69.7
Ca_21937_v3 Cicer arietinum L. HOM05D007589 ORTHO05D009610 7.3e-27 127.1 134 51.5
FAN04G0457 Fragaria x ananassa HOM05D007589 ORTHO05D009610 7.3e-27 127.1 115 60.0
Solyc03g112680.3 Solanum lycopersicum HOM05D007589 ORTHO05D009610 1.6e-26 125.9 197 67.0
Sopen03g031760 Solanum pennellii HOM05D007589 ORTHO05D009610 2.1e-26 125.6 197 67.0
PSO591G0140 Papaver somniferum HOM05D007589 ORTHO05D009610 2.8e-26 125.2 131 55.7
PGSC0003DMG400018163 Solanum tuberosum HOM05D007589 ORTHO05D009610 4.8e-26 124.4 129 54.3
Medtr4g105520 Medicago truncatula HOM05D007589 ORTHO05D009610 8.1e-26 123.6 132 50.0
Eucgr.K02824 Eucalyptus grandis HOM05D007589 ORTHO05D009610 1.1e-25 123.2 202 65.8
PGR044G1443 Punica granatum HOM05D007589 ORTHO05D009610 1.8e-25 122.5 212 63.7
FAN18G4153 Fragaria x ananassa HOM05D007589 ORTHO05D009610 4.0e-25 121.3 111 60.4
Glyma.04G185400 Glycine max HOM05D007589 ORTHO05D009610 6.9e-25 120.6 132 51.5
Lj4g0004851 Lotus japonicus HOM05D007589 ORTHO05D009610 6.9e-25 120.6 194 66.5
Cc04_g12300 Coffea canephora HOM05D007589 ORTHO05D009610 1.5e-24 119.4 104 62.5
DCAR_016475 Daucus carota HOM05D007589 ORTHO05D009610 3.4e-24 118.2 130 50.8
TPR.G37464 Trifolium pratense HOM05D007589 ORTHO05D009610 3.4e-24 118.2 133 49.6
Actinidia33084 Actinidia chinensis HOM05D007589 ORTHO05D009610 4.5e-24 117.9 137 51.1
AUR62008185 Chenopodium quinoa HOM05D003072 ORTHO05D008464 4.5e-24 117.9 116 57.8
VMungo1215G1669 Vigna mungo HOM05D007589 ORTHO05D009610 4.5e-24 117.9 194 65.5
AUR62028765 Chenopodium quinoa HOM05D003072 ORTHO05D008464 5.8e-24 117.5 116 56.9
Aqoxy3G02849 Aquilegia oxysepala HOM05D007589 ORTHO05D009610 1.3e-23 116.3 114 54.4
Ciclev10024596m.g Citrus clementina HOM05D007589 ORTHO05D009610 2.9e-23 115.2 120 55.0
Glyma.05G039100 Glycine max HOM05D007589 ORTHO05D009610 2.9e-23 115.2 186 66.7
Glyma.17G087700 Glycine max HOM05D007589 ORTHO05D009610 3.8e-23 114.8 128 49.2
Phvul.003G202100 Phaseolus vulgaris HOM05D007589 ORTHO05D009610 4.9e-23 114.4 128 50.0
SalBow5G4666 Salvia bowleyana HOM05D007589 ORTHO05D009610 1.4e-22 112.8 132 50.8
Sc12g0005220 Simmondsia chinensis HOM05D007589 ORTHO05D009610 1.9e-22 112.5 185 63.2
EL10Ac5g10716 Beta vulgaris HOM05D007589 ORTHO05D009610 4.2e-22 111.3 127 49.6
Thecc.03G018200 Theobroma cacao HOM05D007589 ORTHO05D009610 5.4e-22 110.9 82 67.1
Actinidia19335 Actinidia chinensis HOM05D007589 ORTHO05D009610 1.2e-21 109.8 134 49.3
Ah.11g051460 Amaranthus hybridus HOM05D004430 ORTHO05D005088 1.6e-21 109.4 126 50.0
Phvul.009G176400 Phaseolus vulgaris HOM05D007589 ORTHO05D009610 1.8e-20 105.9 194 62.4
VMungo1309G1240 Vigna mungo HOM05D007589 ORTHO05D009610 3.0e-20 105.1 132 47.7
GSVIVG01007707001 Vitis vinifera HOM05D007589 ORTHO05D009610 2.5e-19 102.1 90 54.4
Lsat_1_v5_gn_4_75740 Lactuca sativa HOM05D007589 ORTHO05D009610 2.4e-17 95.5 129 42.6
SGA_v2.0_scaffold25G10827 Striga asiatica HOM05D007589 ORTHO05D009610 6.9e-17 94.0 171 65.5
SGA_v2.0_scaffold90G27887 Striga asiatica HOM05D007589 ORTHO05D009610 1.5e-16 92.8 157 70.7
CSS0018601 Camellia sinensis var. sinensis HOM05D007589 ORTHO05D009610 2.0e-16 92.4 91 48.4
TAR622G1112 Trochodendron aralioides HOM05D007589 ORTHO05D009610 2.0e-16 92.4 99 48.5
CDE05G1299 Ceratophyllum demersum HOM05D007589 ORTHO05D009610 3.4e-16 91.7 105 46.7
Oeu036007.1 Olea europaea HOM05D007589 ORTHO05D009610 9.9e-16 90.1 91 48.4
Lalb_Chr12g0201691 Lupinus albus HOM05D007589 ORTHO05D009610 2.9e-15 88.6 89 46.1
arahy.Tifrunner.gnm1.ann1.F1J4V4 Arachis hypogaea HOM05D007589 ORTHO05D009610 3.8e-15 88.2 109 47.7
Lj5P126T52 Lonicera japonica HOM05D007589 ORTHO05D009610 4.9e-15 87.8 90 51.1
arahy.Tifrunner.gnm1.ann1.T4P8DW Arachis hypogaea HOM05D007589 ORTHO05D009610 1.4e-14 86.3 109 47.7
arahy.Tifrunner.gnm1.ann1.VU2AWH Arachis hypogaea HOM05D007589 ORTHO05D009610 2.4e-14 85.5 109 47.7
Zm00001eb283380 Zea mays HOM05D007589 ORTHO05D009610 1.2e-13 83.2 98 48.0
arahy.Tifrunner.gnm1.ann1.A5PTB1 Arachis hypogaea HOM05D007589 ORTHO05D009610 1.6e-13 82.8 99 40.4
Migut.O00121 Erythranthe guttata HOM05D007589 ORTHO05D009610 2.7e-13 82.0 79 55.7
Os05g0170300 Oryza sativa ssp. japonica HOM05D007589 ORTHO05D009610 7.9e-13 80.5 183 63.4
arahy.Tifrunner.gnm1.ann1.A9F7WL Arachis hypogaea HOM05D007589 ORTHO05D009610 2.5e-11 75.5 139 37.4
ATR1152G048 Amborella trichopoda HOM05D007589 ORTHO05D009610 4.3e-11 74.7 91 44.0
HPP92_003441 Vanilla planifolia HOM05D007589 ORTHO05D009610 1.6e-10 72.8 87 43.7
SEGI_11765 Sequoiadendron giganteum HOM05D007589 ORTHO05D009610 1.0e-07 63.5 91 34.1
SEGI_17881 Sequoiadendron giganteum HOM05D007589 ORTHO05D009610 1.7e-07 62.8 69 49.3
DCAR_023116 Daucus carota HOM05D000021 ORTHO05D000010 2.2e-07 62.4 92 41.3
Manes.12G119600 Manihot esculenta HOM05D000029 ORTHO05D000854 8.4e-07 60.5 91 34.1
Manes.13G105900 Manihot esculenta HOM05D000029 ORTHO05D000854 8.4e-07 60.5 89 37.1
Oeu015276.1 Olea europaea HOM05D000094 ORTHO05D001414 8.4e-07 60.5 63 50.8
SEGI_16911 Sequoiadendron giganteum HOM05D000029 ORTHO05D006401 8.4e-07 60.5 69 44.9
SEGI_17722 Sequoiadendron giganteum HOM05D000029 ORTHO05D006401 8.4e-07 60.5 69 44.9
FAN10G0830 Fragaria x ananassa HOM05D000021 ORTHO05D000010 1.1e-06 60.1 54 51.9
Manes.05G203800 Manihot esculenta HOM05D000094 ORTHO05D001414 1.1e-06 60.1 65 47.7
Lj1g0013409 Lotus japonicus HOM05D000029 ORTHO05D008509 2.5e-06 58.9 69 39.1
AUR62016695 Chenopodium quinoa HOM05D000021 ORTHO05D000010 3.2e-06 58.5 81 35.8
AUR62017437 Chenopodium quinoa HOM05D000094 ORTHO05D002350 3.2e-06 58.5 82 36.6
Zm00001eb184760 Zea mays HOM05D000021 ORTHO05D000010 4.2e-06 58.2 63 41.3
EL10Ac2g03999 Beta vulgaris HOM05D000029 ORTHO05D008509 5.5e-06 57.8 65 36.9
PGR042G2071 Punica granatum HOM05D000021 ORTHO05D000010 5.5e-06 57.8 66 45.5
RcHm_v2.0_Chr1g0370261 Rosa chinensis HOM05D000021 ORTHO05D000010 5.5e-06 57.8 54 50.0
SalBow6G1913 Salvia bowleyana HOM05D000021 ORTHO05D000010 5.5e-06 57.8 76 39.5
A09p13640 Brassica napus HOM05D000761 ORTHO05D003834 7.1e-06 57.4 87 34.5
BraA09t37017Z Brassica rapa HOM05D000761 ORTHO05D003834 7.1e-06 57.4 87 34.5
Cfa007145 Carpinus fangiana HOM05D000094 ORTHO05D002350 7.1e-06 57.4 68 42.6
COL.COLO4_20982 Corchorus olitorius HOM05D000029 ORTHO05D008509 7.1e-06 57.4 61 47.5
FAN01G1107 Fragaria x ananassa HOM05D000021 ORTHO05D000010 7.1e-06 57.4 78 41.0
PGR042G2217 Punica granatum HOM05D000021 ORTHO05D000010 7.1e-06 57.4 66 36.4
TWI34G1424 Tripterygium wilfordii HOM05D000094 ORTHO05D002350 7.1e-06 57.4 92 33.7
ATR0767G025 Amborella trichopoda HOM05D000029 ORTHO05D000854 9.3e-06 57.0 93 33.3
C09p16300 Brassica napus HOM05D000761 ORTHO05D003834 9.3e-06 57.0 87 33.3
FvH4_7g24510 Fragaria vesca HOM05D000021 ORTHO05D000010 9.3e-06 57.0 79 40.5
Gohir.D05G047700 Gossypium hirsutum HOM05D000029 ORTHO05D008509 9.3e-06 57.0 97 35.1
Gorai.009G049000 Gossypium raimondii HOM05D000029 ORTHO05D008509 9.3e-06 57.0 97 35.1
HanXRQChr11g0352421 Helianthus annuus HOM05D000029 ORTHO05D008509 9.3e-06 57.0 60 40.0
Lj3P704T12 Lonicera japonica HOM05D000021 ORTHO05D000010 9.3e-06 57.0 93 32.3
Oeu022936.1 Olea europaea HOM05D000021 ORTHO05D000010 9.3e-06 57.0 57 40.4
RcHm_v2.0_Chr1g0370281 Rosa chinensis HOM05D000021 ORTHO05D000010 9.3e-06 57.0 54 50.0
SalBow6G0879 Salvia bowleyana HOM05D001856 ORTHO05D000010 9.3e-06 57.0 76 36.8
SalBow6G2583 Salvia bowleyana HOM05D000021 ORTHO05D000010 9.3e-06 57.0 76 36.8
SalBow6G4798 Salvia bowleyana HOM05D000021 ORTHO05D000010 9.3e-06 57.0 97 33.0
THA.LOC104827437 Tarenaya hassleriana HOM05D000033 ORTHO05D002493 9.3e-06 57.0 93 38.7
HPP92_026756 Vanilla planifolia HOM05D000761 ORTHO05D003834 9.3e-06 57.0 57 43.9


User provided reference genes

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