Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0025657 Sechium edule HOM05D007991 ORTHO05D010158 3.1e-38 161.4 85 100.0
ClCG11G016360 Citrullus lanatus HOM05D007991 ORTHO05D010158 5.7e-16 87.4 69 72.5
ClCG11G016370 Citrullus lanatus HOM05D007991 ORTHO05D010158 5.7e-16 87.4 69 72.5
MELO3C010561.2 Cucumis melo HOM05D007991 ORTHO05D010158 1.3e-15 86.3 69 73.9
CsaV3_4G031820 Cucumis sativus L. HOM05D005971 ORTHO05D007459 1.3e-15 86.3 69 73.9
Manes.06G170901 Manihot esculenta HOM05D007991 ORTHO05D010158 9.0e-14 80.1 69 69.6
Manes.06G170500 Manihot esculenta HOM05D007991 ORTHO05D010158 1.5e-13 79.3 70 67.1
Medtr2g069650 Medicago truncatula HOM05D007991 ORTHO05D010158 2.0e-13 79.0 68 61.8
QL04p074011 Quercus lobata HOM05D007991 ORTHO05D010158 5.9e-13 77.4 53 77.4
TPR.G9765 Trifolium pratense HOM05D007991 ORTHO05D010158 7.7e-13 77.0 68 58.8
Prupe.4G140900 Prunus persica HOM05D007991 ORTHO05D010158 1.7e-12 75.9 53 73.6
Ciclev10023629m.g Citrus clementina HOM05D007991 ORTHO05D010158 2.2e-12 75.5 54 72.2
Lsat_1_v5_gn_7_112301 Lactuca sativa HOM05D007991 ORTHO05D010158 2.2e-12 75.5 54 75.9
Atru.chr8.1056 Acer truncatum HOM05D007991 ORTHO05D010158 3.8e-12 74.7 74 59.5
Lalb_Chr19g0133391 Lupinus albus HOM05D007991 ORTHO05D010158 5.0e-12 74.3 64 60.9
Lalb_Chr03g0031611 Lupinus albus HOM05D007991 ORTHO05D010158 6.5e-12 73.9 55 67.3
Cpa.g.sc10.36 Carica papaya HOM05D007991 ORTHO05D010158 8.5e-12 73.6 69 58.0
Psat1g011440 Pisum sativum HOM05D007991 ORTHO05D010158 1.1e-11 73.2 55 65.5
Carub.0003s1230 Capsella rubella HOM05D007991 ORTHO05D010158 1.4e-11 72.8 70 57.1
ECA236G0423 Erigeron canadensis HOM05D007991 ORTHO05D010158 1.4e-11 72.8 57 68.4
COL.COLO4_28875 Corchorus olitorius HOM05D007991 ORTHO05D010158 1.9e-11 72.4 70 55.7
TWI39G0184 Tripterygium wilfordii HOM05D007991 ORTHO05D010158 1.9e-11 72.4 57 68.4
GSVIVG01012568001 Vitis vinifera HOM05D007991 ORTHO05D010158 1.9e-11 72.4 62 62.9
GSVIVG01035227001 Vitis vinifera HOM05D007991 ORTHO05D010158 1.9e-11 72.4 62 62.9
Aqoxy6G00820 Aquilegia oxysepala HOM05D007991 ORTHO05D010158 2.5e-11 72.0 71 57.7
Ca_03685_v3 Cicer arietinum L. HOM05D007991 ORTHO05D010158 2.5e-11 72.0 72 59.7
AT3G12960 Arabidopsis thaliana HOM05D007991 ORTHO05D010158 3.2e-11 71.6 71 57.7
PGR042G3415 Punica granatum HOM05D007991 ORTHO05D010158 3.2e-11 71.6 53 69.8
PGSC0003DMG400022239 Solanum tuberosum HOM05D007991 ORTHO05D010158 3.2e-11 71.6 53 69.8
CARHR087490 Cardamine hirsuta HOM05D007991 ORTHO05D010158 4.2e-11 71.2 74 56.8
Ah.07g206310 Amaranthus hybridus HOM05D007991 ORTHO05D010158 7.2e-11 70.5 53 66.0
Solyc07g066400.1 Solanum lycopersicum HOM05D007991 ORTHO05D010158 7.2e-11 70.5 53 67.9
Aa31LG8G190 Aethionema arabicum HOM05D007991 ORTHO05D010158 9.4e-11 70.1 70 55.7
Gorai.007G003200 Gossypium raimondii HOM05D007991 ORTHO05D010158 9.4e-11 70.1 53 67.9
MD05G1219200 Malus domestica HOM05D007991 ORTHO05D010158 9.4e-11 70.1 53 66.0
Glyma.08G172800 Glycine max HOM05D007991 ORTHO05D010158 1.2e-10 69.7 73 53.4
Gohir.A11G002600 Gossypium hirsutum HOM05D007991 ORTHO05D010158 1.2e-10 69.7 53 67.9
Lj3g0014492 Lotus japonicus HOM05D007991 ORTHO05D010158 1.2e-10 69.7 66 57.6
Sp3g11110 Schrenkiella parvula HOM05D007991 ORTHO05D010158 1.6e-10 69.3 67 58.2
CSS0001388 Camellia sinensis var. sinensis HOM05D007991 ORTHO05D010158 2.1e-10 68.9 65 60.0
AL3G24640 Arabidopsis lyrata HOM05D007991 ORTHO05D010158 2.7e-10 68.6 53 66.0
Nn7g37867 Nelumbo nucifera HOM05D007991 ORTHO05D010158 2.7e-10 68.6 74 54.1
Peaxi162Scf00452g00812 Petunia axillaris HOM05D007991 ORTHO05D010158 2.7e-10 68.6 53 66.0
RcHm_v2.0_Chr5g0026701 Rosa chinensis HOM05D007991 ORTHO05D010158 2.7e-10 68.6 55 63.6
CAN.G943.33 Capsicum annuum HOM05D007991 ORTHO05D010158 3.6e-10 68.2 53 67.9
COL.COLO4_04148 Corchorus olitorius HOM05D007991 ORTHO05D010158 3.6e-10 68.2 53 66.0
Sopen07g034570 Solanum pennellii HOM05D007991 ORTHO05D010158 3.6e-10 68.2 53 67.9
BcaB04g21024 Brassica carinata HOM05D007991 ORTHO05D010158 4.6e-10 67.8 67 55.2
Phvul.005G056100 Phaseolus vulgaris HOM05D007991 ORTHO05D010158 4.6e-10 67.8 61 55.7
Gohir.D11G002200 Gossypium hirsutum HOM05D007991 ORTHO05D010158 6.1e-10 67.4 53 66.0
Sc16g0005380 Simmondsia chinensis HOM05D007991 ORTHO05D010158 7.9e-10 67.0 53 66.0
unitig_8.g4768 Utricularia gibba HOM05D007991 ORTHO05D010158 7.9e-10 67.0 54 70.4
Thhalv10022193m.g Eutrema salsugineum HOM05D007991 ORTHO05D010158 1.0e-09 66.6 70 52.9
BcaC09g48284 Brassica carinata HOM05D007991 ORTHO05D010158 1.8e-09 65.9 62 58.1
C01p52180 Brassica napus HOM05D007991 ORTHO05D010158 1.8e-09 65.9 62 58.1
BolC1t05158H Brassica oleracea HOM05D007991 ORTHO05D010158 1.8e-09 65.9 62 58.1
BraA01t04089Z Brassica rapa HOM05D007991 ORTHO05D010158 1.8e-09 65.9 62 58.1
Nitab4.5_0008437g0010 Nicotiana tabacum HOM05D007991 ORTHO05D010158 1.8e-09 65.9 76 47.4
Cfa019429 Carpinus fangiana HOM05D007991 ORTHO05D010158 3.0e-09 65.1 50 66.0
CiPaw.04G012700 Carya illinoinensis HOM05D007991 ORTHO05D010158 3.0e-09 65.1 73 52.1
Duzib205G1447 Durio zibethinus HOM05D007991 ORTHO05D010158 3.0e-09 65.1 76 52.6
HanXRQChr11g0334671 Helianthus annuus HOM05D007991 ORTHO05D010158 3.0e-09 65.1 54 64.8
CANSAT80G1088 Cannabis sativa HOM05D007991 ORTHO05D010158 5.1e-09 64.3 72 52.8
SalBow2G0434 Salvia bowleyana HOM05D007991 ORTHO05D010158 8.8e-09 63.5 68 55.9
EL10Ac4g08566 Beta vulgaris HOM05D007991 ORTHO05D010158 1.9e-08 62.4 53 62.3
MBI02_g12653_MAGBIO Magnolia biondii HOM05D007991 ORTHO05D010158 7.4e-08 60.5 53 62.3
CSS0033446 Camellia sinensis var. sinensis HOM05D007991 ORTHO05D010158 9.7e-08 60.1 48 66.7
FAN11G2864 Fragaria x ananassa HOM05D007991 ORTHO05D010158 2.2e-07 58.9 73 49.3
FAN21G1902 Fragaria x ananassa HOM05D007991 ORTHO05D010158 2.2e-07 58.9 73 49.3
FAN16G1552 Fragaria x ananassa HOM05D007991 ORTHO05D010158 2.8e-07 58.5 73 49.3
FAN25G2658 Fragaria x ananassa HOM05D007991 ORTHO05D010158 1.1e-06 56.6 73 47.9
PSO675G0275 Papaver somniferum HOM05D007991 ORTHO05D010158 5.3e-06 54.3 74 47.3
MD05G1300500 Malus domestica HOM05D007991 ORTHO05D010158 9.1e-06 53.5 48 60.4


User provided reference genes

Program Settings