Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0025600 Sechium edule HOM05D006562 ORTHO05D008230 0.0e+00 1178.3 585 100.0
ClCG01G020460 Citrullus lanatus HOM05D006562 ORTHO05D008230 1.9e-286 988.8 605 83.6
CsaV3_6G047340 Cucumis sativus L. HOM05D006562 ORTHO05D008230 1.5e-280 969.1 585 82.9
MELO3C007925.2 Cucumis melo HOM05D006562 ORTHO05D008230 1.1e-257 893.3 647 72.3
Cfa007000 Carpinus fangiana HOM05D006562 ORTHO05D008230 1.8e-212 743.0 591 64.6
CiPaw.07G060900 Carya illinoinensis HOM05D006562 ORTHO05D008230 9.4e-206 720.7 591 62.4
Haze_03732 Corylus avellana HOM05D006562 ORTHO05D008230 7.4e-203 711.1 627 60.0
QL06p051072 Quercus lobata HOM05D006562 ORTHO05D008230 2.2e-202 709.5 600 62.0
GSVIVG01018736001 Vitis vinifera HOM05D006562 ORTHO05D008230 1.4e-196 690.3 592 61.0
MD15G1242700 Malus domestica HOM05D006562 ORTHO05D008230 5.2e-196 688.3 589 60.4
Potri.005G111000 Populus trichocarpa HOM05D006562 ORTHO05D008230 4.8e-194 681.8 593 60.7
COL.COLO4_22460 Corchorus olitorius HOM05D006562 ORTHO05D008230 1.4e-193 680.2 591 60.7
Thecc.01G014800 Theobroma cacao HOM05D006562 ORTHO05D008230 3.1e-193 679.1 588 61.2
Manes.01G148500 Manihot esculenta HOM05D006562 ORTHO05D008230 3.5e-192 675.6 601 59.9
Atru.chr3.853 Acer truncatum HOM05D006562 ORTHO05D008230 7.7e-192 674.5 626 58.5
CANSAT25G3480 Cannabis sativa HOM05D006562 ORTHO05D008230 7.7e-192 674.5 579 60.4
Gohir.D10G089300 Gossypium hirsutum HOM05D006562 ORTHO05D008230 1.7e-191 673.3 593 61.4
Actinidia22955 Actinidia chinensis HOM05D006562 ORTHO05D008230 1.1e-190 670.6 591 59.1
Gorai.011G098200 Gossypium raimondii HOM05D006562 ORTHO05D008230 3.6e-189 665.6 593 61.0
Cpa.g.sc6.285 Carica papaya HOM05D006562 ORTHO05D008230 6.1e-189 664.8 615 56.6
RcHm_v2.0_Chr2g0099051 Rosa chinensis HOM05D006562 ORTHO05D008230 1.8e-188 663.3 595 59.3
Lj2A480G48 Lonicera japonica HOM05D006562 ORTHO05D008230 2.3e-188 662.9 593 57.3
TWI53G1373 Tripterygium wilfordii HOM05D006562 ORTHO05D008230 6.8e-188 661.4 591 58.7
Gohir.A10G098700 Gossypium hirsutum HOM05D006562 ORTHO05D008230 2.6e-187 659.4 590 59.8
Sabra05G0091000 Salix brachista HOM05D006562 ORTHO05D008230 3.4e-187 659.1 609 58.0
Lj4g0007150 Lotus japonicus HOM05D006562 ORTHO05D008230 6.3e-186 654.8 593 56.8
vmacro22151 Vaccinium macrocarpon HOM05D006562 ORTHO05D008230 1.1e-185 654.1 597 58.1
vmacro22192 Vaccinium macrocarpon HOM05D006562 ORTHO05D008230 1.4e-185 653.7 597 58.0
FvH4_1g11470 Fragaria vesca HOM05D006562 ORTHO05D008230 1.8e-185 653.3 577 59.3
Dinv33663 Davidia involucrata HOM05D006562 ORTHO05D008230 1.6e-184 650.2 594 58.8
FAN28G2818 Fragaria x ananassa HOM05D006562 ORTHO05D008230 3.8e-183 645.6 575 59.0
TPR.G19508 Trifolium pratense HOM05D006562 ORTHO05D008230 1.5e-182 643.7 568 57.7
FAN19G2077 Fragaria x ananassa HOM05D006562 ORTHO05D008230 2.5e-182 642.9 592 56.9
Glyma.16G124500 Glycine max HOM05D006562 ORTHO05D008230 3.0e-180 636.0 548 59.9
TAR376G1060 Trochodendron aralioides HOM05D006562 ORTHO05D008230 1.2e-179 634.0 594 56.6
Psat4g101960 Pisum sativum HOM05D006562 ORTHO05D008230 1.5e-179 633.6 570 56.3
CSS0025685 Camellia sinensis var. sinensis HOM05D006562 ORTHO05D008230 2.6e-179 632.9 594 56.6
Medtr8g075250 Medicago truncatula HOM05D006562 ORTHO05D008230 1.1e-177 627.5 568 56.5
FAN23G1005 Fragaria x ananassa HOM05D006562 ORTHO05D008230 1.4e-177 627.1 578 57.8
VMungo0251G0646 Vigna mungo HOM05D006562 ORTHO05D008230 1.4e-177 627.1 562 57.5
Ca_03628_v3 Cicer arietinum L. HOM05D006562 ORTHO05D008230 7.0e-177 624.8 617 54.0
Phvul.003G265000 Phaseolus vulgaris HOM05D006562 ORTHO05D008230 1.2e-176 624.0 571 56.9
Eucgr.I02333 Eucalyptus grandis HOM05D006562 ORTHO05D008230 7.8e-176 621.3 581 57.0
DCAR_014038 Daucus carota HOM05D006562 ORTHO05D008230 2.8e-173 612.8 522 58.4
arahy.Tifrunner.gnm1.ann1.6MN492 Arachis hypogaea HOM05D006562 ORTHO05D008230 1.2e-171 607.4 564 56.4
arahy.Tifrunner.gnm1.ann1.X2JQ1G Arachis hypogaea HOM05D006562 ORTHO05D008230 2.0e-171 606.7 567 55.9
Duzib187G1447 Durio zibethinus HOM05D006562 ORTHO05D008230 1.7e-170 603.6 592 56.1
Sc16g0001970 Simmondsia chinensis HOM05D006562 ORTHO05D008230 2.2e-170 603.2 584 53.8
HanXRQChr15g0483891 Helianthus annuus HOM05D006562 ORTHO05D008230 4.9e-170 602.1 588 52.7
Prupe.7G171500 Prunus persica HOM05D006562 ORTHO05D008230 1.0e-167 594.3 493 62.5
Ciclev10025220m.g Citrus clementina HOM05D006562 ORTHO05D008230 8.6e-167 591.3 529 57.3
Lsat_1_v5_gn_3_72080 Lactuca sativa HOM05D006562 ORTHO05D008230 1.9e-166 590.1 584 54.3
Lalb_Chr16g0391391 Lupinus albus HOM05D006562 ORTHO05D008230 1.9e-166 590.1 587 53.8
AL8G45460 Arabidopsis lyrata HOM05D006562 ORTHO05D008230 1.2e-165 587.4 592 53.5
Thhalv10003881m.g Eutrema salsugineum HOM05D006562 ORTHO05D008230 1.4e-164 583.9 589 52.6
Cc07_g11050 Coffea canephora HOM05D006562 ORTHO05D008230 3.1e-164 582.8 593 54.3
Carub.0008s2836 Capsella rubella HOM05D006562 ORTHO05D008230 5.2e-164 582.0 591 52.3
AT5G66130 Arabidopsis thaliana HOM05D006562 ORTHO05D008230 3.4e-163 579.3 595 52.3
Sp2g30560 Schrenkiella parvula HOM05D006562 ORTHO05D008230 1.7e-162 577.0 590 52.7
Aqoxy5G01815 Aquilegia oxysepala HOM05D006562 ORTHO05D008230 2.2e-162 576.6 580 54.1
CARHR281620 Cardamine hirsuta HOM05D006562 ORTHO05D008230 4.1e-161 572.4 571 52.9
AUR62003339 Chenopodium quinoa HOM05D006562 ORTHO05D008230 4.1e-161 572.4 569 52.7
Nitab4.5_0001892g0110 Nicotiana tabacum HOM05D006562 ORTHO05D008230 1.3e-159 567.4 589 52.0
PGR119G1624 Punica granatum HOM05D006562 ORTHO05D008230 6.6e-159 565.1 583 52.0
MBI05_g23389_MAGBIO Magnolia biondii HOM05D006562 ORTHO05D008230 5.6e-158 562.0 613 52.0
SGA_v2.0_scaffold229G43296 Striga asiatica HOM05D006562 ORTHO05D008230 1.2e-155 554.3 563 52.4
Migut.L00910 Erythranthe guttata HOM05D006562 ORTHO05D008230 3.4e-155 552.7 587 50.9
AUR62029498 Chenopodium quinoa HOM05D006562 ORTHO05D008230 5.8e-155 552.0 522 54.0
Solyc02g083600.4 Solanum lycopersicum HOM05D006562 ORTHO05D008230 5.8e-155 552.0 591 51.4
Sopen02g028380 Solanum pennellii HOM05D006562 ORTHO05D008230 1.7e-154 550.4 571 52.4
BcaC04g23114 Brassica carinata HOM05D006562 ORTHO05D008230 8.4e-154 548.1 573 51.1
Oeu048479.1 Olea europaea HOM05D006562 ORTHO05D008230 8.4e-154 548.1 575 50.6
BcaB04g20123 Brassica carinata HOM05D006562 ORTHO05D008230 3.2e-153 546.2 588 50.5
SalBow5G1234 Salvia bowleyana HOM05D006562 ORTHO05D008230 1.6e-152 543.9 606 49.8
BraA09t36658Z Brassica rapa HOM05D006562 ORTHO05D008230 4.6e-152 542.3 596 50.2
Nitab4.5_0003187g0030 Nicotiana tabacum HOM05D006562 ORTHO05D008230 8.6e-151 538.1 590 50.0
EL10Ac6g15524 Beta vulgaris HOM05D006562 ORTHO05D008230 1.1e-150 537.7 633 47.7
Rhsim10G0209300 Rhododendron simsii HOM05D006562 ORTHO05D008230 2.5e-150 536.6 628 48.2
Aa31LG1G14620 Aethionema arabicum HOM05D006562 ORTHO05D008230 1.2e-149 534.3 511 53.8
BolC9t54092H Brassica oleracea HOM05D006562 ORTHO05D008230 1.1e-148 531.2 572 50.2
PGSC0003DMG400003647 Solanum tuberosum HOM05D006562 ORTHO05D008230 1.2e-147 527.7 514 54.3
C09p12020 Brassica napus HOM05D006562 ORTHO05D008230 1.5e-147 527.3 573 49.9
A09p10140 Brassica napus HOM05D006562 ORTHO05D008230 9.9e-147 524.6 602 48.7
PSO170G3776 Papaver somniferum HOM05D006562 ORTHO05D008230 1.3e-146 524.2 580 49.3
CAN.G1274.29 Capsicum annuum HOM05D006562 ORTHO05D008230 1.7e-146 523.9 539 51.4
Peaxi162Scf00328g00616 Petunia axillaris HOM05D006562 ORTHO05D008230 2.2e-146 523.5 607 48.8
Ah.03g149120 Amaranthus hybridus HOM05D006562 ORTHO05D008230 9.3e-145 518.1 569 48.3
PSO700G0294 Papaver somniferum HOM05D006562 ORTHO05D008230 9.3e-145 518.1 572 48.4
ECA246G3730 Erigeron canadensis HOM05D006562 ORTHO05D008230 1.7e-138 497.3 578 49.3
unitig_37.g12438 Utricularia gibba HOM05D006562 ORTHO05D008230 1.2e-136 491.1 596 46.0
ATR0712G114 Amborella trichopoda HOM05D006562 ORTHO05D008230 2.3e-135 486.9 552 50.0
MSTRG.15581 Avicennia marina HOM05D006562 ORTHO05D008230 5.6e-134 482.3 492 50.6
Hund16502 Selenicereus undatus HOM05D006562 ORTHO05D008230 4.0e-132 476.1 426 55.2
Os03g0242100 Oryza sativa ssp. japonica HOM05D006562 ORTHO05D008230 7.1e-129 465.3 592 44.3
HPP92_022171 Vanilla planifolia HOM05D006562 ORTHO05D008230 2.7e-128 463.4 613 44.0
SHI08537 Sapria himalayana HOM05D006562 ORTHO05D008230 6.9e-124 448.7 406 55.9
Zm00001eb398900 Zea mays HOM05D006562 ORTHO05D008230 7.4e-118 428.7 523 44.9
HPP92_022170 Vanilla planifolia HOM05D006562 ORTHO05D008230 1.2e-88 331.6 453 43.7
Pp3c8_14180 Physcomitrium patens HOM05D006562 ORTHO05D008230 1.6e-88 331.3 472 41.3
CDE02G3565 Ceratophyllum demersum HOM05D006562 ORTHO05D008230 2.3e-87 327.4 552 36.6
SMO329G0081 Selaginella moellendorffii HOM05D006562 ORTHO05D008230 4.0e-87 326.6 489 37.8
Mapoly0004s0213 Marchantia polymorpha HOM05D006562 ORTHO05D008230 1.1e-81 308.5 588 35.4
Dinv33664 Davidia involucrata HOM05D006562 ORTHO05D008230 8.0e-64 249.2 295 51.2
FAN26G2549 Fragaria x ananassa HOM05D006562 ORTHO05D008230 4.9e-61 240.0 205 57.6
Hma1.2p1_0315F.1_g122300 Hydrangea macrophylla HOM05D006562 ORTHO05D008230 6.4e-53 213.0 189 59.3
SEGI_24182 Sequoiadendron giganteum HOM05D006562 ORTHO05D008230 4.4e-46 190.3 319 36.1
MCO01G428 Micromonas commoda HOM05D006562 ORTHO05D008230 6.4e-37 159.8 571 25.7
Cre03.g196600 Chlamydomonas reinhardtii HOM05D006562 ORTHO05D008230 1.4e-31 142.1 661 23.1
PRCOL_00000425 Prasinoderma coloniale HOM05D006562 ORTHO05D008230 5.8e-30 136.7 385 26.5
Lsat_1_v5_gn_5_17820 Lactuca sativa HOM05D002511 ORTHO05D019442 1.2e-22 112.5 128 50.0
Hund31353 Selenicereus undatus HOM05D006562 ORTHO05D008230 1.5e-22 112.1 130 50.0
Hund31354 Selenicereus undatus HOM05D006562 ORTHO05D008230 1.5e-22 112.1 130 50.0
CBR_g51010 Chara braunii HOM05D006562 ORTHO05D008230 2.0e-22 111.7 360 28.6
Hund31048 Selenicereus undatus HOM05D006562 ORTHO05D008230 1.7e-21 108.6 130 49.2
Hund31049 Selenicereus undatus HOM05D006562 ORTHO05D008230 1.7e-21 108.6 130 49.2
SEGI_14672 Sequoiadendron giganteum HOM05D006562 ORTHO05D008230 1.6e-11 75.5 116 37.1
Sopen10g019740 Solanum pennellii HOM05D006562 ORTHO05D008230 3.5e-11 74.3 69 53.6
Actinidia17422 Actinidia chinensis HOM05D006562 ORTHO05D008230 2.5e-09 68.2 202 30.7
CARHR071130 Cardamine hirsuta HOM05D004094 ORTHO05D004601 8.2e-08 63.2 288 22.6
AL142U10030 Arabidopsis lyrata HOM05D004094 ORTHO05D004601 2.4e-07 61.6 334 21.6
AL2G37830 Arabidopsis lyrata HOM05D004094 ORTHO05D004601 2.4e-07 61.6 334 21.6
Sp5g32780 Schrenkiella parvula HOM05D004094 ORTHO05D004601 1.5e-06 58.9 347 19.3
AT1G77620 Arabidopsis thaliana HOM05D004094 ORTHO05D004601 3.4e-06 57.8 342 21.6
BcaB05g25063 Brassica carinata HOM05D004094 ORTHO05D004601 3.4e-06 57.8 310 21.9
A07p43010 Brassica napus HOM05D004094 ORTHO05D004601 3.4e-06 57.8 324 19.8
Carub.0002s2451 Capsella rubella HOM05D004094 ORTHO05D004601 5.8e-06 57.0 296 20.6
Lsat_1_v5_gn_5_12680 Lactuca sativa HOM05D004664 ORTHO05D005526 5.8e-06 57.0 67 49.3
CBR_g49986 Chara braunii HOM05D001470 ORTHO05D006430 7.6e-06 56.6 275 25.1
BraA07t31822Z Brassica rapa HOM05D004094 ORTHO05D004601 1.0e-05 56.2 324 19.8


User provided reference genes

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