Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0025577 Sechium edule HOM05D006210 ORTHO05D007510 3.0e-207 724.9 365 100.0
CsaV3_3G028470 Cucumis sativus L. HOM05D006210 ORTHO05D007510 2.6e-182 642.1 365 87.4
MELO3C012833.2 Cucumis melo HOM05D006210 ORTHO05D007510 3.3e-182 641.7 365 86.3
ClCG00G001600 Citrullus lanatus HOM05D006210 ORTHO05D007510 1.0e-170 603.6 359 84.1
ClCG07G001460 Citrullus lanatus HOM05D006210 ORTHO05D007510 4.9e-157 558.1 391 75.4
CiPaw.03G272200 Carya illinoinensis HOM05D006210 ORTHO05D007510 2.9e-154 548.9 363 73.8
Ciclev10020743m.g Citrus clementina HOM05D006210 ORTHO05D007510 4.9e-149 531.6 363 71.6
GSVIVG01028451001 Vitis vinifera HOM05D006210 ORTHO05D007510 5.4e-148 528.1 365 70.4
Prupe.1G573100 Prunus persica HOM05D006210 ORTHO05D007510 1.2e-147 526.9 363 71.1
CANSAT01G0995 Cannabis sativa HOM05D006210 ORTHO05D007510 7.3e-145 517.7 366 70.2
QL09p042418 Quercus lobata HOM05D006210 ORTHO05D007510 7.3e-145 517.7 380 68.2
Thecc.01G247800 Theobroma cacao HOM05D006210 ORTHO05D007510 6.2e-144 514.6 363 70.2
Glyma.13G127800 Glycine max HOM05D006210 ORTHO05D007510 8.9e-143 510.8 364 70.1
Manes.13G038600 Manihot esculenta HOM05D006210 ORTHO05D007510 7.5e-142 507.7 363 67.8
Gohir.D11G140400 Gossypium hirsutum HOM05D006210 ORTHO05D007510 9.8e-142 507.3 365 69.9
Phvul.007G154100 Phaseolus vulgaris HOM05D006210 ORTHO05D007510 1.3e-141 506.9 364 69.0
Gohir.A11G134300 Gossypium hirsutum HOM05D006210 ORTHO05D007510 2.2e-141 506.1 365 69.6
Duzib138G0227 Durio zibethinus HOM05D006210 ORTHO05D007510 4.9e-141 505.0 363 68.9
Glyma.10G040900 Glycine max HOM05D006210 ORTHO05D007510 1.1e-140 503.8 364 67.3
Atru.chr5.2084_Atru.chr5.2085 Acer truncatum HOM05D006210 ORTHO05D007510 7.1e-140 501.1 365 69.3
Lj5g0001397 Lotus japonicus HOM05D006210 ORTHO05D007510 7.1e-140 501.1 364 69.8
Potri.002G255300 Populus trichocarpa HOM05D006210 ORTHO05D007510 9.2e-140 500.7 364 67.0
Lalb_Chr21g0314151 Lupinus albus HOM05D006210 ORTHO05D007510 2.7e-139 499.2 379 67.5
MBI10_g26060_MAGBIO Magnolia biondii HOM05D006210 ORTHO05D007510 7.8e-139 497.7 363 66.4
Ca_09640_v3 Cicer arietinum L. HOM05D006210 ORTHO05D007510 1.7e-138 496.5 365 70.4
TWI18G1043 Tripterygium wilfordii HOM05D006210 ORTHO05D007510 2.3e-138 496.1 363 66.7
TPR.G28794 Trifolium pratense HOM05D006210 ORTHO05D007510 3.0e-138 495.7 372 67.7
TAR362G1053 Trochodendron aralioides HOM05D006210 ORTHO05D007510 3.0e-138 495.7 363 65.8
Rhsim13G0040700 Rhododendron simsii HOM05D006210 ORTHO05D007510 5.1e-138 495.0 371 64.7
Eucgr.A01369 Eucalyptus grandis HOM05D006210 ORTHO05D007510 1.5e-137 493.4 363 68.0
Actinidia30115 Actinidia chinensis HOM05D006210 ORTHO05D007510 1.9e-137 493.0 363 65.6
FvH4_2g20260 Fragaria vesca HOM05D006210 ORTHO05D007510 1.9e-137 493.0 365 67.4
Carub.0001s0328 Capsella rubella HOM05D006210 ORTHO05D007510 3.3e-137 492.3 365 66.3
Sp1g02950 Schrenkiella parvula HOM05D006210 ORTHO05D007510 1.2e-136 490.3 363 66.4
Thhalv10008004m.g Eutrema salsugineum HOM05D006210 ORTHO05D007510 2.1e-136 489.6 365 66.8
AT1G04130 Arabidopsis thaliana HOM05D006210 ORTHO05D007510 3.6e-136 488.8 365 65.5
AL1G13730 Arabidopsis lyrata HOM05D006210 ORTHO05D007510 4.7e-136 488.4 365 64.9
CARHR003480 Cardamine hirsuta HOM05D006210 ORTHO05D007510 6.2e-136 488.0 365 66.3
Dinv43053 Davidia involucrata HOM05D006210 ORTHO05D007510 1.8e-135 486.5 340 71.2
Psat6g064440 Pisum sativum HOM05D006210 ORTHO05D007510 2.3e-135 486.1 365 68.2
PGR031G0293 Punica granatum HOM05D006210 ORTHO05D007510 3.1e-135 485.7 362 65.5
Nn1g03023 Nelumbo nucifera HOM05D006210 ORTHO05D007510 4.0e-135 485.3 365 64.1
CSS0033273 Camellia sinensis var. sinensis HOM05D006210 ORTHO05D007510 6.8e-135 484.6 370 64.6
THA.LOC104801120 Tarenaya hassleriana HOM05D006210 ORTHO05D007510 4.4e-134 481.9 360 66.9
BraA09t42139Z Brassica rapa HOM05D006210 ORTHO05D007510 6.4e-133 478.0 386 63.5
PSO210G7683 Papaver somniferum HOM05D006210 ORTHO05D007510 1.1e-132 477.2 365 65.5
Hma1.2p1_2051F.1_g312580 Hydrangea macrophylla HOM05D006210 ORTHO05D007510 1.9e-132 476.5 360 66.7
SalBow5G1930 Salvia bowleyana HOM05D006210 ORTHO05D007510 5.4e-132 474.9 375 61.9
Aa31LG1G20710 Aethionema arabicum HOM05D006210 ORTHO05D007510 7.1e-132 474.6 366 64.8
Oeu058104.1 Olea europaea HOM05D006210 ORTHO05D007510 7.1e-132 474.6 367 65.7
PSO170G6901 Papaver somniferum HOM05D006210 ORTHO05D007510 9.2e-132 474.2 365 65.2
MSTRG.22887 Avicennia marina HOM05D006210 ORTHO05D007510 3.5e-131 472.2 363 65.0
Hund18317 Selenicereus undatus HOM05D006210 ORTHO05D007510 3.5e-131 472.2 363 65.0
Aqoxy5G00102 Aquilegia oxysepala HOM05D006210 ORTHO05D007510 6.0e-131 471.5 363 64.2
BcaC07g42211 Brassica carinata HOM05D006210 ORTHO05D007510 1.7e-130 469.9 367 64.3
BolC8t52775H Brassica oleracea HOM05D006210 ORTHO05D007510 1.7e-130 469.9 391 62.1
Cfa002496 Carpinus fangiana HOM05D006210 ORTHO05D007510 1.7e-130 469.9 336 70.2
ECA247G1810 Erigeron canadensis HOM05D006210 ORTHO05D007510 3.0e-130 469.2 368 63.0
Sopen09g025510 Solanum pennellii HOM05D006210 ORTHO05D007510 3.9e-130 468.8 369 63.4
PGSC0003DMG400007719 Solanum tuberosum HOM05D006210 ORTHO05D007510 5.1e-130 468.4 369 63.4
A09p68040 Brassica napus HOM05D006210 ORTHO05D007510 1.9e-129 466.5 365 65.2
Lj1C76G7 Lonicera japonica HOM05D006210 ORTHO05D007510 1.2e-128 463.8 375 62.1
FAN27G1100 Fragaria x ananassa HOM05D006210 ORTHO05D007510 2.8e-128 462.6 365 63.8
C08p52480 Brassica napus HOM05D006210 ORTHO05D007510 2.4e-127 459.5 365 63.8
VMungo0720G2771 Vigna mungo HOM05D006210 ORTHO05D007510 8.9e-127 457.6 364 64.3
HanXRQChr10g0280241 Helianthus annuus HOM05D006210 ORTHO05D007510 1.3e-125 453.8 366 62.8
Migut.O00355 Erythranthe guttata HOM05D006210 ORTHO05D007510 4.9e-125 451.8 363 61.7
arahy.Tifrunner.gnm1.ann1.J3R5E0 Arachis hypogaea HOM05D006210 ORTHO05D007510 1.1e-124 450.7 354 67.2
unitig_22.g6263 Utricularia gibba HOM05D006210 ORTHO05D007510 1.1e-124 450.7 376 59.8
COL.COLO4_37372 Corchorus olitorius HOM05D006210 ORTHO05D007510 1.4e-124 450.3 366 62.8
Nitab4.5_0000385g0060 Nicotiana tabacum HOM05D006210 ORTHO05D007510 9.6e-121 437.6 363 60.1
Cpa.g.sc87.54 Carica papaya HOM05D006210 ORTHO05D007510 1.8e-119 433.3 424 55.0
arahy.Tifrunner.gnm1.ann1.6WB007 Arachis hypogaea HOM05D006210 ORTHO05D007510 5.3e-119 431.8 364 61.8
BcaC07g42208 Brassica carinata HOM05D006210 ORTHO05D007510 1.7e-117 426.8 378 58.7
Sabra02G0194000 Salix brachista HOM05D006210 ORTHO05D007510 2.9e-117 426.0 389 57.8
Haze_24722 Corylus avellana HOM05D006210 ORTHO05D007510 1.9e-116 423.3 354 63.3
Ah.15g091520 Amaranthus hybridus HOM05D006210 ORTHO05D007510 2.1e-115 419.9 364 58.5
SEGI_04783 Sequoiadendron giganteum HOM05D006210 ORTHO05D007510 2.5e-113 412.9 363 55.6
SGA_v2.0_scaffold382G50403 Striga asiatica HOM05D006210 ORTHO05D007510 1.4e-111 407.1 328 60.4
arahy.Tifrunner.gnm1.ann1.GM89QY Arachis hypogaea HOM05D006210 ORTHO05D007510 4.0e-111 405.6 349 61.9
AUR62025420 Chenopodium quinoa HOM05D006210 ORTHO05D007510 7.6e-110 401.4 363 55.6
Zm00001eb057360 Zea mays HOM05D006210 ORTHO05D007510 2.2e-109 399.8 373 55.5
Peaxi162Scf00043g00235 Petunia axillaris HOM05D006210 ORTHO05D007510 3.2e-108 396.0 328 59.8
Cc01_g17680 Coffea canephora HOM05D006210 ORTHO05D007510 1.5e-102 377.1 363 54.3
ATR0723G059 Amborella trichopoda HOM05D006210 ORTHO05D007510 3.9e-98 362.5 363 52.3
MD10G1174300 Malus domestica HOM05D006210 ORTHO05D007510 1.1e-95 354.4 238 74.8
arahy.Tifrunner.gnm1.ann1.5C4SPF Arachis hypogaea HOM05D006210 ORTHO05D007510 2.2e-93 346.7 238 72.3
Mapoly0012s0146 Marchantia polymorpha HOM05D006210 ORTHO05D007510 2.2e-93 346.7 364 48.9
AUR62008821 Chenopodium quinoa HOM05D006210 ORTHO05D007510 2.9e-93 346.3 363 50.7
RcHm_v2.0_Chr6g0286041 Rosa chinensis HOM05D006210 ORTHO05D007510 3.5e-91 339.3 238 71.4
FAN24G1818 Fragaria x ananassa HOM05D006210 ORTHO05D007510 7.9e-91 338.2 238 71.4
Pp3c19_11990 Physcomitrium patens HOM05D006210 ORTHO05D007510 8.7e-90 334.7 364 47.8
Hma1.2p1_2051F.1_g312575 Hydrangea macrophylla HOM05D006210 ORTHO05D007510 1.8e-87 327.0 238 69.3
CAN.G119.7 Capsicum annuum HOM05D006210 ORTHO05D007510 2.4e-87 326.6 238 67.6
DCAR_000557 Daucus carota HOM05D006210 ORTHO05D007510 2.0e-86 323.6 238 68.5
Solyc09g064380.3 Solanum lycopersicum HOM05D006210 ORTHO05D007510 2.6e-86 323.2 238 68.1
Prupe.8G213100 Prunus persica HOM05D006210 ORTHO05D007510 2.7e-83 313.2 361 50.4
HPP92_025825 Vanilla planifolia HOM05D006210 ORTHO05D007510 4.3e-81 305.8 363 47.1
AagrBONN_evm.TU.Sc2ySwM_228.4049__4050 Anthoceros agrestis HOM05D006210 ORTHO05D007510 9.7e-81 304.7 302 50.7
Gorai.007G150600 Gossypium raimondii HOM05D006210 ORTHO05D007510 6.3e-80 302.0 340 50.6
Lsat_1_v5_gn_9_11700 Lactuca sativa HOM05D006210 ORTHO05D007510 3.8e-77 292.7 292 54.8
EL10Ac7g17713 Beta vulgaris HOM05D006210 ORTHO05D007510 1.8e-71 273.9 238 57.1
Nitab4.5_0000392g0100 Nicotiana tabacum HOM05D006210 ORTHO05D007510 1.8e-71 273.9 306 48.0
CBR_g36953 Chara braunii HOM05D006210 ORTHO05D007510 1.8e-58 230.7 304 39.5
Os03g0750100 Oryza sativa ssp. japonica HOM05D006210 ORTHO05D007510 5.4e-55 219.2 263 47.5
Sc05g0002800 Simmondsia chinensis HOM05D006210 ORTHO05D007510 1.2e-51 208.0 363 36.9
PRCOL_00004543 Prasinoderma coloniale HOM05D006210 ORTHO05D007510 1.0e-45 188.3 360 34.2
MD10G1174200 Malus domestica HOM05D006210 ORTHO05D007510 5.0e-45 186.0 128 67.2
MCO01G218 Micromonas commoda HOM05D006210 ORTHO05D007510 3.4e-41 173.3 371 32.9
Cre08.g375650 Chlamydomonas reinhardtii HOM05D006210 ORTHO05D007510 7.5e-41 172.2 373 31.4
RcHm_v2.0_Chr6g0286031 Rosa chinensis HOM05D006210 ORTHO05D007510 1.6e-38 164.5 131 61.1
DCAR_000556 Daucus carota HOM05D006210 ORTHO05D007510 1.0e-37 161.8 127 63.0
Hma1.2p1_0559F.1_g178660 Hydrangea macrophylla HOM05D000705 ORTHO05D007510 5.0e-37 159.5 102 75.5
CAN.G119.6 Capsicum annuum HOM05D006210 ORTHO05D007510 6.6e-37 159.1 126 57.9
HanXRQChr01g0013201 Helianthus annuus HOM05D006210 ORTHO05D007510 8.3e-32 142.1 127 57.5
MD05G1186500 Malus domestica HOM05D006210 ORTHO05D007510 4.6e-30 136.3 90 74.4
vmacro02716 Vaccinium macrocarpon HOM05D006210 ORTHO05D007510 3.5e-22 110.2 98 53.1
MD05G1186300 Malus domestica HOM05D006210 ORTHO05D007510 7.8e-22 109.0 92 62.0
Sc05g0002820 Simmondsia chinensis HOM05D006210 ORTHO05D007510 8.6e-21 105.5 104 51.9
TAR349G0001 Trochodendron aralioides HOM05D006210 ORTHO05D007510 9.5e-20 102.1 186 36.6
Actinidia37561 Actinidia chinensis HOM05D006210 ORTHO05D007510 2.8e-19 100.5 108 48.1
Cfa024968 Carpinus fangiana HOM05D006210 ORTHO05D007510 1.7e-16 91.3 236 30.1
SEGI_25119 Sequoiadendron giganteum HOM05D006210 ORTHO05D007510 1.7e-13 81.3 53 66.0
Zm00001eb257390 Zea mays HOM05D002462 ORTHO05D002893 2.8e-11 73.9 128 34.4
Zm00001eb416010 Zea mays HOM05D017284 ORTHO05D007510 6.8e-10 69.3 63 50.8
Zm00001eb375820 Zea mays HOM05D000163 ORTHO05D002893 5.8e-09 66.2 125 31.2
CiPaw.03G188000 Carya illinoinensis HOM05D000115 ORTHO05D005317 7.6e-09 65.9 241 28.2
SMO196G0213 Selaginella moellendorffii HOM05D006210 ORTHO05D007510 9.9e-09 65.5 102 38.2
SMO234G0002 Selaginella moellendorffii HOM05D006210 ORTHO05D007510 9.9e-09 65.5 136 36.0
EL10Ac4g09088 Beta vulgaris HOM05D001789 ORTHO05D001755 6.4e-08 62.8 130 33.8
Hund14611 Selenicereus undatus HOM05D002462 ORTHO05D002893 1.4e-07 61.6 128 34.4
BcaC07g41712 Brassica carinata HOM05D002462 ORTHO05D002893 4.2e-07 60.1 110 38.2
Prupe.6G312500 Prunus persica HOM05D001340 ORTHO05D002318 4.2e-07 60.1 117 36.8
BolC8t52289H Brassica oleracea HOM05D002462 ORTHO05D002893 7.1e-07 59.3 110 38.2
Lalb_Chr07g0193951 Lupinus albus HOM05D003946 ORTHO05D004485 1.2e-06 58.5 193 29.5
Peaxi162Scf00282g00618 Petunia axillaris HOM05D001789 ORTHO05D001755 2.1e-06 57.8 129 34.9
Solyc01g097190.4 Solanum lycopersicum HOM05D001789 ORTHO05D001755 2.1e-06 57.8 125 32.8
Sopen01g040860 Solanum pennellii HOM05D001789 ORTHO05D001755 2.1e-06 57.8 125 32.8
ATR0739G132 Amborella trichopoda HOM05D000371 ORTHO05D001484 2.7e-06 57.4 182 25.8
arahy.Tifrunner.gnm1.ann1.5L85H8 Arachis hypogaea HOM05D002462 ORTHO05D002893 2.7e-06 57.4 128 31.2
arahy.Tifrunner.gnm1.ann1.NYXY9W Arachis hypogaea HOM05D002462 ORTHO05D002893 2.7e-06 57.4 128 31.2
CSS0010993 Camellia sinensis var. sinensis HOM05D002462 ORTHO05D002893 2.7e-06 57.4 128 32.0
Duzib093G1896 Durio zibethinus HOM05D000371 ORTHO05D001484 2.7e-06 57.4 186 26.9
Lalb_Chr01g0020941 Lupinus albus HOM05D006451 ORTHO05D007680 3.5e-06 57.0 140 31.4
Medtr7g053470 Medicago truncatula HOM05D000371 ORTHO05D001484 3.5e-06 57.0 160 30.0
Hund05289 Selenicereus undatus HOM05D000371 ORTHO05D001484 3.5e-06 57.0 156 28.2
THA.LOC104817287 Tarenaya hassleriana HOM05D002345 ORTHO05D002391 3.5e-06 57.0 138 34.1
Zm00001eb241230 Zea mays HOM05D000371 ORTHO05D001484 3.5e-06 57.0 218 27.1
Medtr2g078020 Medicago truncatula HOM05D000868 ORTHO05D000711 4.6e-06 56.6 119 33.6
SalBow2G2341 Salvia bowleyana HOM05D000371 ORTHO05D001484 4.6e-06 56.6 180 24.4
HPP92_009631 Vanilla planifolia HOM05D001789 ORTHO05D001755 4.6e-06 56.6 129 34.1
ECA238G2814 Erigeron canadensis HOM05D001789 ORTHO05D001755 6.0e-06 56.2 98 36.7
TPR.G29152 Trifolium pratense HOM05D000371 ORTHO05D001484 6.0e-06 56.2 160 29.4
GSVIVG01036270001 Vitis vinifera HOM05D001789 ORTHO05D001755 6.0e-06 56.2 129 33.3
Glyma.10G003800 Glycine max HOM05D006451 ORTHO05D007680 7.8e-06 55.8 132 32.6
Hma1.2p1_0367F.1_g136990 Hydrangea macrophylla HOM05D002462 ORTHO05D002893 7.8e-06 55.8 139 30.9
MD04G1226000 Malus domestica HOM05D001789 ORTHO05D001755 7.8e-06 55.8 122 33.6
MD07G1239100 Malus domestica HOM05D005592 ORTHO05D006067 7.8e-06 55.8 107 32.7
Manes.09G151500 Manihot esculenta HOM05D001789 ORTHO05D001755 7.8e-06 55.8 114 36.0


User provided reference genes

Program Settings