Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0025492 Sechium edule HOM05D004992 ORTHO05D006004 2.8e-42 175.3 115 100.0
Sed0007059 Sechium edule HOM05D004992 ORTHO05D006004 4.9e-31 137.9 117 67.5
ClCG03G004870 Citrullus lanatus HOM05D004992 ORTHO05D006004 1.8e-25 119.4 112 58.0
MELO3C002469.2 Cucumis melo HOM05D004992 ORTHO05D006004 3.4e-24 115.2 115 55.7
CsaV3_1G010900 Cucumis sativus L. HOM05D004992 ORTHO05D006004 4.5e-24 114.8 114 57.0
VMungo0540G0931 Vigna mungo HOM05D004992 ORTHO05D006004 2.4e-17 92.4 113 44.2
Cfa000249 Carpinus fangiana HOM05D004992 ORTHO05D006004 9.0e-17 90.5 108 44.4
Haze_06774 Corylus avellana HOM05D003428 ORTHO05D004131 1.2e-16 90.1 108 44.4
Phvul.006G151000 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 1.2e-16 90.1 113 41.6
QL05p074036 Quercus lobata HOM05D004992 ORTHO05D006004 1.2e-16 90.1 109 44.0
Potri.004G018600 Populus trichocarpa HOM05D004992 ORTHO05D006004 3.4e-16 88.6 108 45.4
Glyma.13G206400 Glycine max HOM05D004992 ORTHO05D006004 2.2e-15 85.9 118 43.2
Manes.17G037200 Manihot esculenta HOM05D004992 ORTHO05D006004 2.2e-15 85.9 109 44.0
Sabra04G0010400 Salix brachista HOM05D003428 ORTHO05D004131 2.2e-15 85.9 108 43.5
COL.COLO4_31744 Corchorus olitorius HOM05D004992 ORTHO05D006004 2.9e-15 85.5 117 43.6
arahy.Tifrunner.gnm1.ann1.9Z1Z9Z Arachis hypogaea HOM05D004992 ORTHO05D006004 3.8e-15 85.1 121 42.1
arahy.Tifrunner.gnm1.ann1.FJ4Y8F Arachis hypogaea HOM05D004992 ORTHO05D006004 5.0e-15 84.7 121 42.1
Lalb_Chr18g0056231 Lupinus albus HOM05D004992 ORTHO05D006004 5.0e-15 84.7 121 39.7
CiPaw.10G069500 Carya illinoinensis HOM05D004992 ORTHO05D006004 1.1e-14 83.6 108 42.6
Prupe.4G023900 Prunus persica HOM05D004992 ORTHO05D006004 1.4e-14 83.2 118 40.7
CiPaw.09G089400 Carya illinoinensis HOM05D004992 ORTHO05D006004 2.5e-14 82.4 108 41.7
Duzib235G0746 Durio zibethinus HOM05D004992 ORTHO05D006004 2.5e-14 82.4 115 40.9
Lj4g0012462 Lotus japonicus HOM05D004992 ORTHO05D006004 3.2e-14 82.0 113 42.5
Ciclev10016836m.g Citrus clementina HOM05D004992 ORTHO05D006004 4.2e-14 81.6 115 40.0
GSVIVG01012656001 Vitis vinifera HOM05D004992 ORTHO05D006004 5.5e-14 81.3 117 41.0
Duzib192G0598 Durio zibethinus HOM05D004992 ORTHO05D006004 1.2e-13 80.1 115 39.1
Phvul.003G077200 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 1.2e-13 80.1 115 36.5
Glyma.17G015100 Glycine max HOM05D004992 ORTHO05D006004 2.7e-13 79.0 117 39.3
Gohir.A06G147400 Gossypium hirsutum HOM05D004992 ORTHO05D006004 3.6e-13 78.6 115 39.1
Gohir.D06G153200 Gossypium hirsutum HOM05D004992 ORTHO05D006004 6.1e-13 77.8 115 38.3
Gorai.010G179200 Gossypium raimondii HOM05D004992 ORTHO05D006004 6.1e-13 77.8 115 38.3
Cpa.g.sc198.27 Carica papaya HOM05D004992 ORTHO05D006004 7.9e-13 77.4 115 40.0
RcHm_v2.0_Chr5g0003701 Rosa chinensis HOM05D004992 ORTHO05D006004 1.0e-12 77.0 115 40.0
Glyma.07G259100 Glycine max HOM05D004992 ORTHO05D006004 1.4e-12 76.6 117 38.5
Thecc.06G217500 Theobroma cacao HOM05D004992 ORTHO05D006004 3.0e-12 75.5 116 37.9
Ca_00623_v3 Cicer arietinum L. HOM05D004992 ORTHO05D006004 3.9e-12 75.1 122 39.3
Potri.011G000400 Populus trichocarpa HOM05D004992 ORTHO05D006004 5.1e-12 74.7 108 41.7
CANSAT56G2390 Cannabis sativa HOM05D004992 ORTHO05D006004 6.7e-12 74.3 125 39.2
arahy.Tifrunner.gnm1.ann1.PC5S43 Arachis hypogaea HOM05D004992 ORTHO05D006004 1.5e-11 73.2 116 37.9
arahy.Tifrunner.gnm1.ann1.T879FL Arachis hypogaea HOM05D004992 ORTHO05D006004 1.5e-11 73.2 116 37.9
TPR.G7639 Trifolium pratense HOM05D004992 ORTHO05D006004 1.5e-11 73.2 117 39.3
Dinv13873 Davidia involucrata HOM05D004992 ORTHO05D006004 2.5e-11 72.4 114 36.8
Sed0000784 Sechium edule HOM05D004992 ORTHO05D006004 2.5e-11 72.4 112 38.4
Medtr2g022820 Medicago truncatula HOM05D004992 ORTHO05D006004 3.3e-11 72.0 114 36.8
TWI38G1979 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 3.3e-11 72.0 115 39.1
FvH4_3g02450 Fragaria vesca HOM05D004992 ORTHO05D006004 4.3e-11 71.6 117 36.8
MD10G1317900 Malus domestica HOM05D004992 ORTHO05D006004 7.4e-11 70.9 125 33.6
arahy.Tifrunner.gnm1.ann1.Z4K8V6 Arachis hypogaea HOM05D004992 ORTHO05D006004 1.3e-10 70.1 116 37.1
VMungo1215G1625 Vigna mungo HOM05D004992 ORTHO05D006004 1.3e-10 70.1 115 35.7
TWI38G1613 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 2.2e-10 69.3 115 37.4
FAN21G0406 Fragaria x ananassa HOM05D004992 ORTHO05D006004 2.8e-10 68.9 117 35.9
CSS0017416 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 6.3e-10 67.8 121 37.2
Solyc02g080360.1 Solanum lycopersicum HOM05D004992 ORTHO05D006004 8.2e-10 67.4 112 34.8
Sopen02g025060 Solanum pennellii HOM05D004992 ORTHO05D006004 8.2e-10 67.4 112 34.8
Hma1.2p1_0091F.1_g046260 Hydrangea macrophylla HOM05D004992 ORTHO05D006004 2.4e-09 65.9 116 35.3
FAN25G3450 Fragaria x ananassa HOM05D004992 ORTHO05D006004 4.1e-09 65.1 115 34.8
Cc09_g01920 Coffea canephora HOM05D004992 ORTHO05D006004 2.0e-08 62.8 115 33.0
Medtr4g131880 Medicago truncatula HOM05D004992 ORTHO05D006004 2.6e-08 62.4 111 36.0
TPR.G37044 Trifolium pratense HOM05D004992 ORTHO05D006004 2.6e-08 62.4 110 35.5
TAR624G0245 Trochodendron aralioides HOM05D004992 ORTHO05D006004 2.6e-08 62.4 113 38.1
ClCG01G022080 Citrullus lanatus HOM05D004992 ORTHO05D006004 4.5e-08 61.6 109 33.9
Lalb_Chr17g0348391 Lupinus albus HOM05D004992 ORTHO05D006004 4.5e-08 61.6 115 34.8
Nn1g07103 Nelumbo nucifera HOM05D004992 ORTHO05D006004 4.5e-08 61.6 108 35.2
PSO675G1893 Papaver somniferum HOM05D004992 ORTHO05D006004 5.9e-08 61.2 108 50.9
PGSC0003DMG400016488 Solanum tuberosum HOM05D004992 ORTHO05D006004 5.9e-08 61.2 113 37.2
TPR.G37097 Trifolium pratense HOM05D004992 ORTHO05D006004 1.0e-07 60.5 110 35.5
MELO3C007381.2 Cucumis melo HOM05D004992 ORTHO05D006004 1.3e-07 60.1 105 34.3
Prupe.4G209300 Prunus persica HOM05D004992 ORTHO05D006004 1.7e-07 59.7 108 35.2
Manes.16G010000 Manihot esculenta HOM05D004992 ORTHO05D006004 2.2e-07 59.3 110 36.4
Potri.001G421100 Populus trichocarpa HOM05D004992 ORTHO05D006004 2.2e-07 59.3 108 36.1
Nitab4.5_0010096g0060 Nicotiana tabacum HOM05D004992 ORTHO05D006004 2.9e-07 58.9 112 32.1
Migut.M01784 Erythranthe guttata HOM05D004992 ORTHO05D006004 6.5e-07 57.8 103 34.0
Sc17g0007220 Simmondsia chinensis HOM05D004992 ORTHO05D006004 6.5e-07 57.8 132 47.0
EL10Ac8g20021 Beta vulgaris HOM05D004992 ORTHO05D006004 1.4e-06 56.6 124 39.5
THA.LOC104806295 Tarenaya hassleriana HOM05D004992 ORTHO05D006004 2.5e-06 55.8 116 33.6
Aa31LG6G3760 Aethionema arabicum HOM05D004992 ORTHO05D006004 3.2e-06 55.5 117 44.4
Potri.011G136500 Populus trichocarpa HOM05D004992 ORTHO05D006004 3.2e-06 55.5 108 32.4
Eucgr.D01305 Eucalyptus grandis HOM05D004992 ORTHO05D006004 4.2e-06 55.1 111 32.4
Eucgr.L03501 Eucalyptus grandis HOM05D004992 ORTHO05D006004 4.2e-06 55.1 111 32.4
TPR.G29123 Trifolium pratense HOM05D004992 ORTHO05D006004 5.5e-06 54.7 112 32.1
Eucgr.F03448 Eucalyptus grandis HOM05D004992 ORTHO05D006004 7.2e-06 54.3 106 32.1
Lsat_1_v5_gn_9_94121 Lactuca sativa HOM05D004992 ORTHO05D006004 7.2e-06 54.3 108 31.5
CANSAT21G1815 Cannabis sativa HOM05D004992 ORTHO05D006004 9.4e-06 53.9 108 56.5


User provided reference genes

Program Settings