Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0025480 Sechium edule HOM05D004911 ORTHO05D005930 0.0e+00 2213.3 1131 100.0
ClCG01G007110 Citrullus lanatus HOM05D004911 ORTHO05D005930 0.0e+00 1949.1 1136 87.9
MELO3C005202.2 Cucumis melo HOM05D004911 ORTHO05D005930 0.0e+00 1930.2 1135 87.2
CsaV3_5G017560 Cucumis sativus L. HOM05D004911 ORTHO05D005930 0.0e+00 1914.4 1136 86.5
CANSAT56G0121 Cannabis sativa HOM05D004911 ORTHO05D005930 0.0e+00 1349.3 1138 63.9
Atru.chr11.1224 Acer truncatum HOM05D004911 ORTHO05D005930 0.0e+00 1347.8 1153 62.4
Manes.03G080800 Manihot esculenta HOM05D004911 ORTHO05D005930 0.0e+00 1345.1 1138 63.6
Potri.008G085300 Populus trichocarpa HOM05D004911 ORTHO05D005930 0.0e+00 1345.1 1134 63.4
Cfa008718 Carpinus fangiana HOM05D004911 ORTHO05D005930 0.0e+00 1344.3 1143 63.1
Ciclev10030563m.g Citrus clementina HOM05D004911 ORTHO05D005930 0.0e+00 1335.9 1128 62.5
Prupe.2G211300 Prunus persica HOM05D004911 ORTHO05D005930 0.0e+00 1335.5 1144 63.0
Sabra08G0063200 Salix brachista HOM05D004911 ORTHO05D005930 0.0e+00 1331.2 1149 62.1
MD07G1172300 Malus domestica HOM05D004911 ORTHO05D005930 0.0e+00 1321.6 1158 61.7
GSVIVG01010210001 Vitis vinifera HOM05D004911 ORTHO05D005930 0.0e+00 1321.6 1139 62.5
FAN10G1537 Fragaria x ananassa HOM05D004911 ORTHO05D005930 0.0e+00 1320.8 1145 62.2
Dinv12051 Davidia involucrata HOM05D004911 ORTHO05D005930 0.0e+00 1320.1 1135 61.9
FAN03G1024 Fragaria x ananassa HOM05D004911 ORTHO05D005930 0.0e+00 1319.7 1145 62.1
FAN10G0928 Fragaria x ananassa HOM05D004911 ORTHO05D005930 0.0e+00 1318.9 1145 62.2
TWI53G1120 Tripterygium wilfordii HOM05D004911 ORTHO05D005930 0.0e+00 1317.8 1134 62.2
RcHm_v2.0_Chr1g0362961 Rosa chinensis HOM05D004911 ORTHO05D005930 0.0e+00 1316.6 1131 62.2
Thecc.02G295700 Theobroma cacao HOM05D004911 ORTHO05D005930 0.0e+00 1308.5 1136 61.4
Duzib251G0593 Durio zibethinus HOM05D004911 ORTHO05D005930 0.0e+00 1308.1 1135 61.5
FvH4_7g19060 Fragaria vesca HOM05D004911 ORTHO05D005930 0.0e+00 1308.1 1132 62.1
FAN06G1517 Fragaria x ananassa HOM05D004911 ORTHO05D005930 0.0e+00 1302.0 1132 61.8
FAN06G4750 Fragaria x ananassa HOM05D004911 ORTHO05D005930 0.0e+00 1300.8 1132 61.7
FAN01G1211 Fragaria x ananassa HOM05D004911 ORTHO05D005930 0.0e+00 1293.1 1147 61.2
MD01G1105900 Malus domestica HOM05D004911 ORTHO05D005930 0.0e+00 1291.6 1153 60.7
Actinidia04316 Actinidia chinensis HOM05D004911 ORTHO05D005930 0.0e+00 1275.0 1141 59.6
CSS0020868 Camellia sinensis var. sinensis HOM05D004911 ORTHO05D005930 0.0e+00 1267.7 1137 60.2
Cpa.g.sc63.15 Carica papaya HOM05D004911 ORTHO05D005930 0.0e+00 1266.5 1139 60.7
Gorai.012G182900 Gossypium raimondii HOM05D004911 ORTHO05D005930 0.0e+00 1254.2 1131 60.3
Glyma.12G027900 Glycine max HOM05D004911 ORTHO05D005930 0.0e+00 1253.0 1130 59.6
PSO063G3537 Papaver somniferum HOM05D004911 ORTHO05D005930 0.0e+00 1251.9 1140 58.3
Gohir.D04G186500 Gossypium hirsutum HOM05D004911 ORTHO05D005930 0.0e+00 1251.5 1131 60.5
Glyma.11G102800 Glycine max HOM05D004911 ORTHO05D005930 0.0e+00 1250.0 1128 59.0
VMungo1215G1051 Vigna mungo HOM05D004911 ORTHO05D005930 0.0e+00 1249.6 1129 59.9
Gohir.A04G143200 Gossypium hirsutum HOM05D004911 ORTHO05D005930 0.0e+00 1246.9 1130 60.3
Nn3g18681 Nelumbo nucifera HOM05D004911 ORTHO05D005930 0.0e+00 1245.7 1140 59.6
Aqoxy3G04281 Aquilegia oxysepala HOM05D004911 ORTHO05D005930 0.0e+00 1243.4 1136 59.9
PSO782G1502 Papaver somniferum HOM05D004911 ORTHO05D005930 0.0e+00 1242.6 1142 58.1
PGR044G1924 Punica granatum HOM05D004911 ORTHO05D005930 0.0e+00 1239.6 1140 58.1
Lj3C852G13 Lonicera japonica HOM05D004911 ORTHO05D005930 0.0e+00 1238.4 1145 59.2
Medtr4g074460 Medicago truncatula HOM05D004911 ORTHO05D005930 0.0e+00 1231.1 1133 57.9
Rhsim09G0072200 Rhododendron simsii HOM05D004911 ORTHO05D005930 0.0e+00 1221.1 1171 57.6
Ca_25607_v3 Cicer arietinum L. HOM05D004911 ORTHO05D005930 0.0e+00 1220.7 1135 57.7
Psat7g173880 Pisum sativum HOM05D004911 ORTHO05D005930 0.0e+00 1219.1 1135 57.9
MBI03_g33919_MAGBIO Magnolia biondii HOM05D004911 ORTHO05D005930 0.0e+00 1206.4 1132 58.5
Lj3g0004396 Lotus japonicus HOM05D004911 ORTHO05D005930 0.0e+00 1204.1 1133 57.7
EL10Ac9g22915 Beta vulgaris HOM05D004911 ORTHO05D005930 0.0e+00 1202.2 1141 57.1
Lalb_Chr19g0139351 Lupinus albus HOM05D004911 ORTHO05D005930 0.0e+00 1190.3 1133 57.8
Hund08529 Selenicereus undatus HOM05D004911 ORTHO05D005930 0.0e+00 1182.9 1145 56.6
Sopen10g030460 Solanum pennellii HOM05D004911 ORTHO05D005930 0.0e+00 1180.2 1142 55.9
Solyc10g079850.2 Solanum lycopersicum HOM05D004911 ORTHO05D005930 0.0e+00 1178.3 1146 56.0
PGSC0003DMG400029831 Solanum tuberosum HOM05D004911 ORTHO05D005930 0.0e+00 1178.3 1145 55.9
Nitab4.5_0000562g0030 Nicotiana tabacum HOM05D004911 ORTHO05D005930 0.0e+00 1177.2 1142 56.6
AUR62015197 Chenopodium quinoa HOM05D004911 ORTHO05D005930 0.0e+00 1175.2 1084 57.7
Nitab4.5_0000677g0060 Nicotiana tabacum HOM05D004911 ORTHO05D005930 0.0e+00 1168.3 1139 56.3
arahy.Tifrunner.gnm1.ann1.Q7DFN3 Arachis hypogaea HOM05D004911 ORTHO05D005930 0.0e+00 1164.8 1022 59.4
Hma1.2p1_0183F.1_g081050 Hydrangea macrophylla HOM05D004911 ORTHO05D005930 0.0e+00 1163.7 1091 58.2
ECA246G1490 Erigeron canadensis HOM05D004911 ORTHO05D005930 0.0e+00 1154.0 1154 56.0
Lsat_1_v5_gn_0_9321 Lactuca sativa HOM05D004911 ORTHO05D005930 0.0e+00 1153.3 1145 55.8
COL.COLO4_16624 Corchorus olitorius HOM05D004911 ORTHO05D005930 0.0e+00 1151.7 1131 56.6
Peaxi162Scf01315g00114 Petunia axillaris HOM05D004911 ORTHO05D005930 0.0e+00 1146.3 1136 55.5
CARHR095390 Cardamine hirsuta HOM05D004911 ORTHO05D005930 0.0e+00 1143.3 1142 54.5
Thhalv10019942m.g Eutrema salsugineum HOM05D004911 ORTHO05D005930 0.0e+00 1141.3 1141 55.0
AT3G19870 Arabidopsis thaliana HOM05D004911 ORTHO05D005930 0.0e+00 1138.6 1142 54.6
THA.LOC104809147 Tarenaya hassleriana HOM05D004911 ORTHO05D005930 0.0e+00 1138.3 1132 55.6
Sc06g0007820 Simmondsia chinensis HOM05D004911 ORTHO05D005930 0.0e+00 1132.9 1144 54.0
AL3G33410 Arabidopsis lyrata HOM05D004911 ORTHO05D005930 0.0e+00 1131.7 1142 54.3
Carub.0003s1976 Capsella rubella HOM05D004911 ORTHO05D005930 0.0e+00 1130.5 1142 54.2
HanXRQChr06g0175521 Helianthus annuus HOM05D004911 ORTHO05D005930 0.0e+00 1130.5 1152 55.0
Sp3g17890 Schrenkiella parvula HOM05D004911 ORTHO05D005930 0.0e+00 1130.2 1146 54.6
vmacro16011 Vaccinium macrocarpon HOM05D004911 ORTHO05D005930 0.0e+00 1124.4 1134 56.1
MSTRG.8077 Avicennia marina HOM05D004911 ORTHO05D005930 0.0e+00 1118.6 1139 53.6
SalBow2G3529 Salvia bowleyana HOM05D004911 ORTHO05D005930 0.0e+00 1114.8 1139 53.7
Ah.01g001680 Amaranthus hybridus HOM05D004911 ORTHO05D005930 0.0e+00 1112.8 1146 53.7
Aa31LG8G6640 Aethionema arabicum HOM05D004911 ORTHO05D005930 0.0e+00 1103.6 1135 53.5
C01p44300 Brassica napus HOM05D004911 ORTHO05D005930 0.0e+00 1103.6 1138 54.0
BolC1t04393H Brassica oleracea HOM05D004911 ORTHO05D005930 0.0e+00 1103.6 1138 54.0
BraA01t03570Z Brassica rapa HOM05D004911 ORTHO05D005930 0.0e+00 1096.3 1137 53.4
Migut.H02310 Erythranthe guttata HOM05D004911 ORTHO05D005930 0.0e+00 1095.5 1146 53.4
A01p34870 Brassica napus HOM05D004911 ORTHO05D005930 0.0e+00 1093.6 1137 53.3
Cc07_g19490 Coffea canephora HOM05D004911 ORTHO05D005930 0.0e+00 1090.9 1148 52.9
DCAR_023433 Daucus carota HOM05D004911 ORTHO05D005930 0.0e+00 1087.8 1134 52.9
CAN.G1656.8 Capsicum annuum HOM05D004911 ORTHO05D005930 1.2e-310 1070.1 1031 56.5
ATR0564G294 Amborella trichopoda HOM05D004911 ORTHO05D005930 3.2e-308 1062.0 1178 51.0
SGA_v2.0_scaffold80G25956 Striga asiatica HOM05D004911 ORTHO05D005930 1.2e-302 1043.5 1109 52.1
unitig_22.g6363 Utricularia gibba HOM05D004911 ORTHO05D005930 9.4e-292 1007.3 1148 49.9
SHI04173 Sapria himalayana HOM05D004911 ORTHO05D005930 3.3e-281 972.2 1151 48.8
BcaC09g48939 Brassica carinata HOM05D004911 ORTHO05D005930 2.3e-274 949.5 1131 49.2
TPR.G32325 Trifolium pratense HOM05D004911 ORTHO05D005930 2.7e-270 936.0 904 56.0
Os02g0829400 Oryza sativa ssp. japonica HOM05D004911 ORTHO05D005930 1.8e-250 870.2 1133 44.8
QL03p043438 Quercus lobata HOM05D004911 ORTHO05D005930 9.5e-244 847.8 640 67.3
CiPaw.05G166600 Carya illinoinensis HOM05D004911 ORTHO05D005930 6.8e-242 841.6 661 64.4
Eucgr.J00848 Eucalyptus grandis HOM05D004911 ORTHO05D005930 8.9e-242 841.3 755 57.7
CDE05G0535 Ceratophyllum demersum HOM05D004911 ORTHO05D005930 2.6e-233 813.1 1133 43.5
AUR62017660 Chenopodium quinoa HOM05D004911 ORTHO05D005930 3.9e-221 772.7 641 61.5
Hma1.2p1_0183F.1_g081060 Hydrangea macrophylla HOM05D004911 ORTHO05D005930 1.0e-213 748.0 645 60.6
SMO367G0101 Selaginella moellendorffii HOM05D004911 ORTHO05D005930 1.3e-205 721.1 1156 39.8
Haze_11729 Corylus avellana HOM05D004911 ORTHO05D005930 2.4e-202 710.3 612 63.9
Mapoly0023s0169 Marchantia polymorpha HOM05D004911 ORTHO05D005930 6.9e-202 708.8 1212 37.9
Oeu056145.2 Olea europaea HOM05D004911 ORTHO05D005930 3.5e-198 696.4 643 55.5
Pp3c23_5970 Physcomitrium patens HOM05D004911 ORTHO05D005930 5.7e-196 689.1 1229 37.3
TAR371G0035 Trochodendron aralioides HOM05D004911 ORTHO05D005930 1.8e-194 684.1 559 62.8
Phvul.002G058701 Phaseolus vulgaris HOM05D004911 ORTHO05D005930 1.1e-186 658.3 560 60.9
Zm00001eb259390 Zea mays HOM05D004911 ORTHO05D005930 5.5e-175 619.4 635 50.9
HPP92_012853 Vanilla planifolia HOM05D004911 ORTHO05D005930 1.5e-167 594.7 706 47.5
CiPaw.05G166500 Carya illinoinensis HOM05D004911 ORTHO05D005930 2.4e-154 550.8 491 63.1
Haze_11728 Corylus avellana HOM05D004911 ORTHO05D005930 8.6e-152 542.3 462 61.3
TAR371G0490 Trochodendron aralioides HOM05D004911 ORTHO05D005930 1.5e-148 531.6 517 57.3
QL03p043434 Quercus lobata HOM05D004911 ORTHO05D005930 9.5e-143 512.3 486 59.9
CBR_g20270 Chara braunii HOM05D004911 ORTHO05D005930 7.9e-81 306.6 1596 23.8
AagrBONN_evm.TU.Sc2ySwM_228.3553 Anthoceros agrestis HOM05D004911 ORTHO05D005930 1.1e-74 286.2 520 36.2
AagrBONN_evm.TU.Sc2ySwM_228.3554 Anthoceros agrestis HOM05D004911 ORTHO05D005930 1.8e-72 278.9 545 35.0
HPP92_012844 Vanilla planifolia HOM05D004911 ORTHO05D005930 5.1e-72 277.3 733 33.0
HPP92_012845 Vanilla planifolia HOM05D004911 ORTHO05D005930 1.1e-71 276.2 260 53.8
SHI47273 Sapria himalayana HOM05D004911 ORTHO05D005930 5.7e-63 247.3 480 34.6
SHI34912 Sapria himalayana HOM05D004911 ORTHO05D005930 3.1e-61 241.5 580 30.9
SHI38855 Sapria himalayana HOM05D004911 ORTHO05D005930 1.1e-50 206.5 378 39.4
SHI50333 Sapria himalayana HOM05D004911 ORTHO05D005930 8.0e-49 200.3 513 31.6
SHI42568 Sapria himalayana HOM05D004911 ORTHO05D005930 2.0e-47 195.7 595 28.1
SHI53748 Sapria himalayana HOM05D004911 ORTHO05D005930 5.7e-47 194.1 213 49.8
SHI45395 Sapria himalayana HOM05D004911 ORTHO05D005930 8.0e-41 173.7 666 26.3
SHI45716 Sapria himalayana HOM05D004911 ORTHO05D005930 8.0e-41 173.7 666 26.3
SHI34911 Sapria himalayana HOM05D004911 ORTHO05D005930 4.8e-38 164.5 256 39.8
SHI39005 Sapria himalayana HOM05D004911 ORTHO05D005930 7.0e-37 160.6 185 47.0
SHI49274 Sapria himalayana HOM05D004911 ORTHO05D005930 7.0e-37 160.6 259 40.5
SHI39004 Sapria himalayana HOM05D004911 ORTHO05D005930 2.1e-33 149.1 201 46.3
SHI39007 Sapria himalayana HOM05D004911 ORTHO05D005930 2.3e-32 145.6 362 31.2
SHI42567 Sapria himalayana HOM05D004911 ORTHO05D005930 2.2e-30 139.0 201 43.8
SHI50603 Sapria himalayana HOM05D004911 ORTHO05D005930 2.5e-26 125.6 219 36.5
SHI51106 Sapria himalayana HOM05D004911 ORTHO05D005930 1.2e-25 123.2 110 52.7
VMungo0251G2567 Vigna mungo HOM05D004911 ORTHO05D018492 2.8e-25 122.1 110 56.4
SHI38854 Sapria himalayana HOM05D004911 ORTHO05D005930 1.8e-24 119.4 121 56.2
SHI45396 Sapria himalayana HOM05D004911 ORTHO05D005930 1.1e-16 93.6 211 32.7
SHI45717 Sapria himalayana HOM05D004911 ORTHO05D005930 1.1e-16 93.6 211 32.7
SEGI_29886 Sequoiadendron giganteum HOM05D004911 ORTHO05D005930 2.3e-16 92.4 146 42.5
SHI45052 Sapria himalayana HOM05D004911 ORTHO05D005930 2.6e-15 89.0 153 33.3
Dinv29855 Davidia involucrata HOM05D004911 ORTHO05D005930 4.4e-15 88.2 53 77.4
SHI45051 Sapria himalayana HOM05D004911 ORTHO05D005930 3.5e-12 78.6 52 69.2
EL10Ac2g03601 Beta vulgaris HOM05D004911 ORTHO05D005930 4.3e-10 71.6 58 56.9
ATR0624G005 Amborella trichopoda HOM05D004911 ORTHO05D005930 9.5e-10 70.5 130 38.5
Haze_13501 Corylus avellana HOM05D004911 ORTHO05D005930 8.1e-09 67.4 69 56.5
SMO343G0003 Selaginella moellendorffii HOM05D004911 ORTHO05D005930 1.7e-06 59.7 82 39.0
SHI52879 Sapria himalayana HOM05D004911 ORTHO05D005930 2.9e-06 58.9 151 30.5


User provided reference genes

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