Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0025455 Sechium edule HOM05D005400 ORTHO05D006668 0.0e+00 2212.6 1191 100.0
ClCG01G000730 Citrullus lanatus HOM05D005400 ORTHO05D006668 0.0e+00 1824.3 1206 80.3
MELO3C005855.2 Cucumis melo HOM05D005400 ORTHO05D006668 0.0e+00 1794.6 1212 82.1
CsaV3_5G000860 Cucumis sativus L. HOM05D005400 ORTHO05D006668 0.0e+00 1794.2 1203 82.6
QL09p011755 Quercus lobata HOM05D005400 ORTHO05D006668 0.0e+00 1143.3 1126 58.3
MD01G1212700 Malus domestica HOM05D005400 ORTHO05D006668 0.0e+00 1138.6 1245 53.3
RcHm_v2.0_Chr1g0379691 Rosa chinensis HOM05D005400 ORTHO05D006668 0.0e+00 1127.5 1124 57.9
Cfa016337 Carpinus fangiana HOM05D005400 ORTHO05D006668 0.0e+00 1127.1 1200 56.9
GSVIVG01028757001 Vitis vinifera HOM05D005400 ORTHO05D006668 0.0e+00 1124.0 1120 56.7
FvH4_7g30740 Fragaria vesca HOM05D005400 ORTHO05D006668 0.0e+00 1117.1 1127 57.6
FAN06G4050 Fragaria x ananassa HOM05D005400 ORTHO05D006668 0.0e+00 1116.7 1127 57.5
FAN06G5036 Fragaria x ananassa HOM05D005400 ORTHO05D006668 0.0e+00 1113.2 1127 57.4
Ciclev10004177m.g Citrus clementina HOM05D005400 ORTHO05D006668 0.0e+00 1098.2 1234 52.6
CANSAT21G0517 Cannabis sativa HOM05D005400 ORTHO05D006668 0.0e+00 1086.2 1291 50.9
Manes.06G155000 Manihot esculenta HOM05D005400 ORTHO05D006668 1.6e-311 1073.2 1115 54.2
Actinidia34175 Actinidia chinensis HOM05D005400 ORTHO05D006668 5.7e-311 1071.2 1232 51.6
Sabra15G0021300 Salix brachista HOM05D005400 ORTHO05D006668 8.1e-310 1067.4 1159 54.4
Phvul.007G077600 Phaseolus vulgaris HOM05D005400 ORTHO05D006668 4.0e-309 1065.1 1269 50.0
Sabra15G0018800 Salix brachista HOM05D005400 ORTHO05D006668 6.8e-309 1064.3 1165 54.2
Nn1g01753 Nelumbo nucifera HOM05D005400 ORTHO05D006668 8.9e-309 1063.9 1122 53.7
FAN03G3290 Fragaria x ananassa HOM05D005400 ORTHO05D006668 7.5e-308 1060.8 1100 57.0
TAR374G0725 Trochodendron aralioides HOM05D005400 ORTHO05D006668 1.3e-307 1060.1 1259 50.8
Potri.015G024300 Populus trichocarpa HOM05D005400 ORTHO05D006668 2.9e-307 1058.9 1167 56.6
TWI14G1289 Tripterygium wilfordii HOM05D005400 ORTHO05D006668 1.2e-305 1053.5 1128 53.0
Thecc.03G189100 Theobroma cacao HOM05D005400 ORTHO05D006668 1.6e-305 1053.1 1217 51.5
Glyma.20G164400 Glycine max HOM05D005400 ORTHO05D006668 1.1e-303 1047.0 1265 51.4
Lj5g0007861 Lotus japonicus HOM05D005400 ORTHO05D006668 4.3e-303 1045.0 1139 56.9
vmacro06593 Vaccinium macrocarpon HOM05D005400 ORTHO05D006668 8.9e-301 1037.3 1268 50.2
Lalb_Chr06g0161421 Lupinus albus HOM05D005400 ORTHO05D006668 1.2e-300 1036.9 1112 53.4
arahy.Tifrunner.gnm1.ann1.E9FCC2 Arachis hypogaea HOM05D005400 ORTHO05D006668 9.9e-300 1033.9 1197 51.0
CiPaw.05G259500 Carya illinoinensis HOM05D005400 ORTHO05D006668 2.9e-299 1032.3 964 58.8
Prupe.2G304900 Prunus persica HOM05D005400 ORTHO05D006668 2.9e-299 1032.3 1159 53.7
Eucgr.A02677 Eucalyptus grandis HOM05D005400 ORTHO05D006668 3.7e-299 1031.9 1274 49.8
Glyma.10G227900 Glycine max HOM05D005400 ORTHO05D006668 1.9e-298 1029.6 1115 53.6
TPR.G7748 Trifolium pratense HOM05D005400 ORTHO05D006668 1.0e-296 1023.8 1173 50.6
VMungo0720G2624 Vigna mungo HOM05D005400 ORTHO05D006668 1.3e-296 1023.5 1162 54.9
Medtr1g099370 Medicago truncatula HOM05D005400 ORTHO05D006668 8.6e-296 1020.8 1176 51.0
arahy.Tifrunner.gnm1.ann1.B3EP0P Arachis hypogaea HOM05D005400 ORTHO05D006668 4.3e-295 1018.5 1132 52.3
PGR042G3191 Punica granatum HOM05D005400 ORTHO05D006668 8.4e-291 1004.2 1253 48.3
Psat6g194880 Pisum sativum HOM05D005400 ORTHO05D006668 2.1e-289 999.6 1261 48.5
THA.LOC104811936 Tarenaya hassleriana HOM05D005400 ORTHO05D006668 7.8e-289 997.7 1215 49.4
FAN01G1802 Fragaria x ananassa HOM05D005400 ORTHO05D006668 3.9e-288 995.3 1105 53.3
Gorai.008G272300 Gossypium raimondii HOM05D005400 ORTHO05D006668 2.5e-287 992.6 1256 50.9
MBI06_g29320_MAGBIO Magnolia biondii HOM05D005400 ORTHO05D006668 4.3e-287 991.9 1236 47.9
PSO170G5128 Papaver somniferum HOM05D005400 ORTHO05D006668 4.3e-287 991.9 1138 51.1
Dinv35292 Davidia involucrata HOM05D005400 ORTHO05D006668 1.6e-286 989.9 1257 49.1
Gohir.D12G254600 Gossypium hirsutum HOM05D005400 ORTHO05D006668 1.6e-286 989.9 1255 48.4
Cc02_g02120 Coffea canephora HOM05D005400 ORTHO05D006668 2.8e-286 989.2 1089 51.9
MSTRG.27059 Avicennia marina HOM05D005400 ORTHO05D006668 3.6e-286 988.8 1267 48.0
Carub.0008s1311 Capsella rubella HOM05D005400 ORTHO05D006668 9.3e-282 974.2 1183 49.8
AT5G52910 Arabidopsis thaliana HOM05D005400 ORTHO05D006668 2.1e-281 973.0 1217 48.5
AL8G27410 Arabidopsis lyrata HOM05D005400 ORTHO05D006668 1.0e-280 970.7 1183 49.5
Cpa.g.sc3.16 Carica papaya HOM05D005400 ORTHO05D006668 1.1e-279 967.2 1255 47.7
Rhsim03G0196700 Rhododendron simsii HOM05D005400 ORTHO05D006668 1.5e-279 966.8 1231 48.7
SalBow4G2614 Salvia bowleyana HOM05D005400 ORTHO05D006668 1.4e-277 960.3 1243 47.4
Aa31LG3G9160 Aethionema arabicum HOM05D005400 ORTHO05D006668 3.1e-277 959.1 1229 47.9
Thhalv10012488m.g Eutrema salsugineum HOM05D005400 ORTHO05D006668 2.2e-275 953.0 1232 48.3
CARHR265900 Cardamine hirsuta HOM05D005400 ORTHO05D006668 2.9e-275 952.6 1222 48.0
Hund04816 Selenicereus undatus HOM05D005400 ORTHO05D006668 2.9e-275 952.6 1227 47.0
Migut.F00258 Erythranthe guttata HOM05D005400 ORTHO05D006668 4.9e-275 951.8 1135 51.0
Sc13g0009410 Simmondsia chinensis HOM05D005400 ORTHO05D006668 1.1e-274 950.7 1288 45.9
BcaB08g35655 Brassica carinata HOM05D005400 ORTHO05D006668 1.9e-274 949.9 1221 48.8
Oeu037127.2 Olea europaea HOM05D005400 ORTHO05D006668 1.3e-272 943.7 1215 47.7
Solyc03g007800.3 Solanum lycopersicum HOM05D005400 ORTHO05D006668 8.7e-272 941.0 1311 44.2
Sopen03g003730 Solanum pennellii HOM05D005400 ORTHO05D006668 1.9e-271 939.9 1173 47.5
Duzib205G0693 Durio zibethinus HOM05D005400 ORTHO05D006668 3.3e-271 939.1 1021 53.5
CAN.G108.2 Capsicum annuum HOM05D005400 ORTHO05D006668 1.3e-270 937.2 1162 48.4
ECA246G1245 Erigeron canadensis HOM05D005400 ORTHO05D006668 6.2e-270 934.9 1262 46.0
Sp6g15090 Schrenkiella parvula HOM05D005400 ORTHO05D006668 1.8e-269 933.3 1218 48.4
Aqoxy5G04046 Aquilegia oxysepala HOM05D005400 ORTHO05D006668 1.5e-268 930.2 1297 45.4
EL10Ac3g05372 Beta vulgaris HOM05D005400 ORTHO05D006668 2.0e-268 929.9 1144 50.0
BraA10t43124Z Brassica rapa HOM05D005400 ORTHO05D006668 1.1e-266 924.1 1223 47.5
A10p10420 Brassica napus HOM05D005400 ORTHO05D006668 3.2e-266 922.5 1223 47.5
HanXRQChr05g0158761 Helianthus annuus HOM05D005400 ORTHO05D006668 4.2e-266 922.2 1118 49.2
DCAR_020293 Daucus carota HOM05D005400 ORTHO05D006668 1.6e-265 920.2 1195 49.3
CSS0023888 Camellia sinensis var. sinensis HOM05D005400 ORTHO05D006668 6.0e-265 918.3 1213 47.8
BcaC04g20520 Brassica carinata HOM05D005400 ORTHO05D006668 1.8e-264 916.8 1224 47.5
C09p42650 Brassica napus HOM05D005400 ORTHO05D006668 1.8e-264 916.8 1224 47.5
BolC9t57141H Brassica oleracea HOM05D005400 ORTHO05D006668 1.8e-264 916.8 1224 47.5
Haze_00088 Corylus avellana HOM05D005400 ORTHO05D006668 1.1e-263 914.1 1409 45.5
Hma1.2p1_0142F.1_g064190 Hydrangea macrophylla HOM05D005400 ORTHO05D006668 1.9e-263 913.3 953 54.2
Peaxi162Scf00904g00467 Petunia axillaris HOM05D005400 ORTHO05D006668 2.1e-262 909.8 1258 45.0
SGA_v2.0_scaffold44G16767 Striga asiatica HOM05D005400 ORTHO05D006668 1.5e-260 903.7 1094 49.9
Lsat_1_v5_gn_5_37621 Lactuca sativa HOM05D005400 ORTHO05D006668 1.1e-255 887.5 1118 47.7
COL.COLO4_30250 Corchorus olitorius HOM05D005400 ORTHO05D006668 2.5e-255 886.3 1261 45.3
Atru.BG.163.p Acer truncatum HOM05D005400 ORTHO05D006668 1.8e-248 863.6 943 52.1
Nitab4.5_0002340g0020 Nicotiana tabacum HOM05D005400 ORTHO05D006668 8.8e-248 861.3 1156 45.9
Ca_10700_v3 Cicer arietinum L. HOM05D005400 ORTHO05D006668 1.4e-245 854.0 1137 47.0
Gohir.A12G254700 Gossypium hirsutum HOM05D005400 ORTHO05D006668 1.7e-238 830.5 1162 49.3
CSS0002454 Camellia sinensis var. sinensis HOM05D005400 ORTHO05D006668 7.0e-237 825.1 970 51.5
AUR62031458 Chenopodium quinoa HOM05D005400 ORTHO05D006668 1.7e-230 803.9 1103 45.6
Zm00001eb296310 Zea mays HOM05D005400 ORTHO05D006668 2.8e-230 803.1 1125 44.4
ATR0721G161 Amborella trichopoda HOM05D005400 ORTHO05D006668 2.4e-229 800.0 1142 42.7
Os05g0210500 Oryza sativa ssp. japonica HOM05D005400 ORTHO05D006668 5.5e-226 788.9 995 46.3
AUR62021073 Chenopodium quinoa HOM05D005400 ORTHO05D006668 5.0e-219 765.8 1163 42.8
Lj3C915G3 Lonicera japonica HOM05D005400 ORTHO05D006668 7.2e-218 761.9 972 48.3
Ah.07g206200 Amaranthus hybridus HOM05D005400 ORTHO05D006668 1.0e-211 741.5 1098 43.3
SEGI_11166 Sequoiadendron giganteum HOM05D005400 ORTHO05D006668 2.3e-208 730.3 1219 38.8
Nitab4.5_0001748g0020 Nicotiana tabacum HOM05D005400 ORTHO05D006668 3.2e-205 719.9 966 45.8
Hma1.2p1_0142F.1_g064180 Hydrangea macrophylla HOM05D005400 ORTHO05D006668 3.2e-197 693.3 525 66.9
Atru.chr1.311 Acer truncatum HOM05D005400 ORTHO05D006668 1.9e-194 684.1 512 67.4
unitig_46.g18810 Utricularia gibba HOM05D005400 ORTHO05D006668 7.5e-191 672.2 1109 41.0
PGSC0003DMG400006589 Solanum tuberosum HOM05D005400 ORTHO05D006668 1.5e-183 647.9 521 63.0
SHI13742 Sapria himalayana HOM05D005400 ORTHO05D006668 1.9e-181 641.0 956 43.2
CDE03G0155 Ceratophyllum demersum HOM05D005400 ORTHO05D006668 9.3e-173 612.1 1125 38.0
AagrBONN_evm.TU.Sc2ySwM_362.1589 Anthoceros agrestis HOM05D005400 ORTHO05D006668 3.0e-155 553.9 960 37.2
Mapoly0089s0007 Marchantia polymorpha HOM05D005400 ORTHO05D006668 5.3e-144 516.5 1142 32.7
HPP92_007648 Vanilla planifolia HOM05D005400 ORTHO05D006668 1.5e-138 498.4 524 50.0
Pp3c8_21590 Physcomitrium patens HOM05D005400 ORTHO05D006668 2.8e-137 494.2 1182 31.3
SMO353G0144 Selaginella moellendorffii HOM05D005400 ORTHO05D006668 8.3e-97 359.8 939 30.4
PGSC0003DMG400006588 Solanum tuberosum HOM05D005400 ORTHO05D006668 2.0e-90 338.6 547 41.5
FAN10G3192 Fragaria x ananassa HOM05D005400 ORTHO05D006668 1.7e-78 298.9 239 63.2
QL09p011899 Quercus lobata HOM05D005400 ORTHO05D006668 1.3e-70 272.7 271 55.4
RcHm_v2.0_Chr5g0072581 Rosa chinensis HOM05D005400 ORTHO05D006668 2.8e-60 238.4 178 67.4
GSVIVG01028763001 Vitis vinifera HOM05D005400 ORTHO05D006668 3.1e-51 208.4 153 69.3
CBR_g32347 Chara braunii HOM05D000019 ORTHO05D000353 6.9e-51 207.2 232 47.8
Lj3C915T0 Lonicera japonica HOM05D005400 ORTHO05D006668 1.9e-45 189.1 136 71.3
PRCOL_00002573 Prasinoderma coloniale HOM05D005400 ORTHO05D006668 1.8e-35 156.0 573 25.8
CDE04G2330 Ceratophyllum demersum HOM05D005400 ORTHO05D006668 4.6e-31 141.4 105 61.9
arahy.Tifrunner.gnm1.ann1.FE5R37 Arachis hypogaea HOM05D005400 ORTHO05D006668 8.7e-30 137.1 121 58.7
arahy.Tifrunner.gnm1.ann1.3F6PU2 Arachis hypogaea HOM05D005400 ORTHO05D006668 8.2e-28 130.6 107 61.7
Cre06.g284850 Chlamydomonas reinhardtii HOM05D005400 ORTHO05D006668 3.1e-27 128.6 229 36.2
GSVIVG01028765001 Vitis vinifera HOM05D005400 ORTHO05D006668 3.1e-27 128.6 110 61.8
SHI13743 Sapria himalayana HOM05D005400 ORTHO05D006668 1.0e-25 123.6 84 65.5
QL09p011903 Quercus lobata HOM05D005400 ORTHO05D006668 8.2e-20 104.0 128 49.2
FAN06G3414 Fragaria x ananassa HOM05D005400 ORTHO05D006668 1.1e-19 103.6 120 48.3
arahy.Tifrunner.gnm1.ann1.58WBAP Arachis hypogaea HOM05D005400 ORTHO05D006668 1.4e-19 103.2 116 48.3
FAN06G1858 Fragaria x ananassa HOM05D005400 ORTHO05D006668 6.9e-19 100.9 125 47.2
Lsat_1_v5_gn_8_88601 Lactuca sativa HOM05D005400 ORTHO05D006668 5.0e-17 94.7 65 69.2
Glyma.14G176200 Glycine max HOM05D005400 ORTHO05D006668 7.2e-16 90.9 150 41.3
Glyma.03G109600 Glycine max HOM05D005400 ORTHO05D006668 2.6e-13 82.4 71 59.2
Dinv07570 Davidia involucrata HOM05D000001 ORTHO05D000003 5.9e-10 71.2 113 44.2
SHI13741 Sapria himalayana HOM05D005400 ORTHO05D006668 5.0e-09 68.2 86 41.9
GSVIVG01028761001 Vitis vinifera HOM05D005400 ORTHO05D006668 4.2e-08 65.1 389 27.0
FAN08G2853 Fragaria x ananassa HOM05D010729 ORTHO05D011897 1.2e-07 63.5 64 48.4
SMO171G0132 Selaginella moellendorffii HOM05D005400 ORTHO05D006668 2.7e-07 62.4 85 37.6
VMungo0464G0969 Vigna mungo HOM05D005400 ORTHO05D006668 1.4e-06 60.1 109 35.8
Glyma.03G109700 Glycine max HOM05D003586 ORTHO05D004036 3.9e-06 58.5 38 73.7
FvH4_7g30961 Fragaria vesca HOM05D005400 ORTHO05D011897 8.8e-06 57.4 63 42.9


User provided reference genes

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