Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0025444 Sechium edule HOM05D003987 ORTHO05D004532 2.0e-229 798.9 436 100.0
CsaV3_3G034330 Cucumis sativus L. HOM05D003987 ORTHO05D004532 1.2e-170 603.6 438 76.5
ClCG10G021770 Citrullus lanatus HOM05D003987 ORTHO05D004532 1.5e-168 596.7 448 75.7
MELO3C009204.2 Cucumis melo HOM05D003987 ORTHO05D004532 4.4e-165 585.1 438 75.3
Sed0006107 Sechium edule HOM05D003987 ORTHO05D004532 2.7e-122 443.0 364 69.2
Haze_20924 Corylus avellana HOM05D003987 ORTHO05D004532 1.2e-101 374.4 445 55.3
QL07p027561 Quercus lobata HOM05D003987 ORTHO05D004532 7.7e-101 371.7 442 57.2
Cfa017278 Carpinus fangiana HOM05D003987 ORTHO05D004532 3.0e-97 359.8 445 54.4
Prupe.6G268000 Prunus persica HOM05D003987 ORTHO05D004532 1.6e-93 347.4 442 54.1
Duzib093G0208 Durio zibethinus HOM05D003987 ORTHO05D004532 4.2e-91 339.3 443 50.3
Gorai.012G110200 Gossypium raimondii HOM05D003987 ORTHO05D004532 7.2e-91 338.6 443 51.0
Gohir.D04G127200 Gossypium hirsutum HOM05D003987 ORTHO05D004532 2.1e-90 337.0 443 51.0
Thecc.05G024900 Theobroma cacao HOM05D003987 ORTHO05D004532 6.1e-90 335.5 451 51.4
Gohir.A04G086900 Gossypium hirsutum HOM05D003987 ORTHO05D004532 8.8e-89 331.6 445 50.8
Potri.016G109100 Populus trichocarpa HOM05D003987 ORTHO05D004532 2.0e-88 330.5 449 49.9
Potri.006G094600 Populus trichocarpa HOM05D003987 ORTHO05D004532 3.4e-88 329.7 453 49.4
GSVIVG01034033001 Vitis vinifera HOM05D003987 ORTHO05D004532 1.7e-87 327.4 444 51.6
Dinv37095 Davidia involucrata HOM05D003987 ORTHO05D004532 6.3e-87 325.5 447 51.5
Lj2A83T77 Lonicera japonica HOM05D003987 ORTHO05D004532 2.4e-86 323.6 446 47.8
Atru.chr8.2120 Acer truncatum HOM05D003987 ORTHO05D004532 7.0e-86 322.0 446 52.2
Duzib128G2001 Durio zibethinus HOM05D003987 ORTHO05D004532 9.1e-86 321.6 444 49.3
Gorai.002G259700 Gossypium raimondii HOM05D003987 ORTHO05D004532 4.5e-85 319.3 445 47.4
Sabra06G0072400 Salix brachista HOM05D003987 ORTHO05D004532 5.9e-85 318.9 453 48.8
Gohir.A01G224300 Gossypium hirsutum HOM05D003987 ORTHO05D004532 1.0e-84 318.2 445 47.9
COL.COLO4_14650 Corchorus olitorius HOM05D003987 ORTHO05D004532 1.7e-84 317.4 443 50.3
Ciclev10011513m.g Citrus clementina HOM05D003987 ORTHO05D004532 1.5e-83 314.3 448 51.1
Manes.09G100200 Manihot esculenta HOM05D003987 ORTHO05D004532 9.5e-83 311.6 458 50.9
Glyma.18G193700 Glycine max HOM05D003987 ORTHO05D004532 1.2e-82 311.2 444 48.2
Phvul.008G111900 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 3.6e-82 309.7 441 48.5
Glyma.07G142800 Glycine max HOM05D003987 ORTHO05D004532 6.1e-82 308.9 444 47.3
CSS0016809 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 6.8e-81 305.4 428 51.2
CSS0027188 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 1.2e-80 304.7 445 50.1
Lj3g0003026 Lotus japonicus HOM05D003987 ORTHO05D004532 2.0e-80 303.9 446 46.6
RcHm_v2.0_Chr3g0464181 Rosa chinensis HOM05D003987 ORTHO05D004532 4.4e-80 302.8 455 47.5
FvH4_6g12360 Fragaria vesca HOM05D003987 ORTHO05D004532 1.3e-79 301.2 463 46.7
MD04G1143500 Malus domestica HOM05D003987 ORTHO05D004532 1.3e-79 301.2 442 50.5
MD12G1157700 Malus domestica HOM05D003987 ORTHO05D004532 3.2e-78 296.6 437 50.6
Lj1g0003107 Lotus japonicus HOM05D003987 ORTHO05D004532 1.2e-77 294.7 441 44.9
Actinidia05340 Actinidia chinensis HOM05D003987 ORTHO05D004532 5.9e-77 292.4 420 46.9
Cpa.g.sc56.87 Carica papaya HOM05D003987 ORTHO05D004532 1.1e-75 288.1 445 44.3
VMungo1383G2510 Vigna mungo HOM05D003987 ORTHO05D004532 2.1e-74 283.9 452 48.0
FAN02G3471 Fragaria x ananassa HOM05D003987 ORTHO05D004532 2.8e-74 283.5 465 44.5
CANSAT78G1629 Cannabis sativa HOM05D003987 ORTHO05D004532 1.0e-73 281.6 449 44.5
Peaxi162Scf01302g00045 Petunia axillaris HOM05D003987 ORTHO05D004532 1.8e-73 280.8 448 46.7
SalBow3G0011 Salvia bowleyana HOM05D003987 ORTHO05D004532 4.0e-73 279.6 444 44.4
Lalb_Chr19g0124881 Lupinus albus HOM05D003987 ORTHO05D004532 8.9e-73 278.5 447 48.8
Dinv35526 Davidia involucrata HOM05D003987 ORTHO05D004532 2.6e-72 276.9 439 48.7
TWI77G0200 Tripterygium wilfordii HOM05D003987 ORTHO05D004532 1.3e-71 274.6 444 45.3
Nn2g13566 Nelumbo nucifera HOM05D003987 ORTHO05D004532 1.7e-71 274.2 442 45.9
Nitab4.5_0000119g0280 Nicotiana tabacum HOM05D003987 ORTHO05D004532 1.7e-71 274.2 435 43.4
arahy.Tifrunner.gnm1.ann1.B3S732 Arachis hypogaea HOM05D003987 ORTHO05D004532 6.4e-71 272.3 456 45.2
arahy.Tifrunner.gnm1.ann1.S0ZXK0 Arachis hypogaea HOM05D003987 ORTHO05D004532 1.1e-70 271.6 456 45.4
Nitab4.5_0017865g0010 Nicotiana tabacum HOM05D003987 ORTHO05D004532 3.5e-69 266.5 435 42.8
Medtr4g019040 Medicago truncatula HOM05D003987 ORTHO05D004532 7.8e-69 265.4 430 46.5
PGR031G1271 Punica granatum HOM05D003987 ORTHO05D004532 7.8e-69 265.4 454 43.6
Sc22g0004580 Simmondsia chinensis HOM05D003987 ORTHO05D004532 1.0e-68 265.0 440 46.4
Hund08928 Selenicereus undatus HOM05D003987 ORTHO05D004532 3.9e-68 263.1 440 48.0
Lalb_Chr01g0022851 Lupinus albus HOM05D003987 ORTHO05D004532 3.3e-67 260.0 445 47.2
TAR633G1447 Trochodendron aralioides HOM05D003987 ORTHO05D004532 4.7e-66 256.1 441 43.8
AUR62028348 Chenopodium quinoa HOM05D003987 ORTHO05D004532 1.1e-65 255.0 436 41.5
DCAR_028789 Daucus carota HOM05D003987 ORTHO05D004532 1.4e-65 254.6 446 40.8
FAN09G0914 Fragaria x ananassa HOM05D003987 ORTHO05D004532 2.3e-65 253.8 463 42.5
CSS0029662 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 5.2e-65 252.7 442 43.9
PGSC0003DMG400020336 Solanum tuberosum HOM05D003987 ORTHO05D004532 5.2e-65 252.7 449 44.1
EL10Ac8g18936 Beta vulgaris HOM05D003987 ORTHO05D004532 6.8e-65 252.3 446 43.0
Hma1.2p1_0244F.1_g101070 Hydrangea macrophylla HOM05D003987 ORTHO05D004532 8.9e-65 251.9 445 44.7
Oeu018344.1 Olea europaea HOM05D003987 ORTHO05D004532 8.9e-65 251.9 453 44.4
Psat7g242560 Pisum sativum HOM05D003987 ORTHO05D004532 1.2e-64 251.5 445 45.8
Cc06_g01840 Coffea canephora HOM05D003987 ORTHO05D004532 2.6e-64 250.4 454 41.9
Peaxi162Scf00014g00921 Petunia axillaris HOM05D003987 ORTHO05D004532 8.3e-63 245.4 438 43.2
Ca_20115_v3 Cicer arietinum L. HOM05D003987 ORTHO05D004532 1.1e-62 245.0 441 46.5
PGSC0003DMG400019132 Solanum tuberosum HOM05D003987 ORTHO05D004532 1.4e-62 244.6 445 40.7
MBI14_g28607_MAGBIO Magnolia biondii HOM05D003987 ORTHO05D004532 2.4e-62 243.8 423 41.1
PSO339G5295 Papaver somniferum HOM05D003987 ORTHO05D004532 2.4e-62 243.8 441 42.9
Sopen09g006640 Solanum pennellii HOM05D003987 ORTHO05D004532 2.4e-62 243.8 449 43.0
AUR62025345 Chenopodium quinoa HOM05D003987 ORTHO05D004532 3.2e-62 243.4 436 40.4
PSO384G1037 Papaver somniferum HOM05D003987 ORTHO05D004532 1.2e-61 241.5 441 42.4
Migut.J00243 Erythranthe guttata HOM05D003987 ORTHO05D004532 3.5e-61 240.0 443 40.6
Oeu009906.1 Olea europaea HOM05D003987 ORTHO05D004532 1.3e-60 238.0 471 41.6
Aqoxy1G00765 Aquilegia oxysepala HOM05D003987 ORTHO05D004532 1.8e-57 227.6 430 40.9
vmacro08611 Vaccinium macrocarpon HOM05D003987 ORTHO05D004532 6.8e-57 225.7 434 43.3
DCAR_012161 Daucus carota HOM05D003987 ORTHO05D004532 1.2e-56 224.9 445 39.6
Oeu044376.1 Olea europaea HOM05D003987 ORTHO05D004532 1.5e-56 224.6 419 41.5
Lsat_1_v5_gn_9_33201 Lactuca sativa HOM05D003987 ORTHO05D004532 5.8e-56 222.6 447 40.3
THA.LOC104805691 Tarenaya hassleriana HOM05D003987 ORTHO05D004532 5.8e-56 222.6 428 37.4
Migut.L01985 Erythranthe guttata HOM05D003987 ORTHO05D004532 8.4e-55 218.8 462 38.3
SGA_v2.0_scaffold75G24988 Striga asiatica HOM05D003987 ORTHO05D004532 1.1e-54 218.4 441 37.9
Duzib093G1974 Durio zibethinus HOM05D003987 ORTHO05D004532 1.4e-54 218.0 327 43.7
TAR623G1001 Trochodendron aralioides HOM05D003987 ORTHO05D004532 9.2e-54 215.3 434 40.6
Gohir.D01G213600 Gossypium hirsutum HOM05D003987 ORTHO05D004532 1.0e-52 211.8 341 40.5
arahy.Tifrunner.gnm1.ann1.L5BN96 Arachis hypogaea HOM05D003987 ORTHO05D004532 1.5e-51 208.0 439 41.7
arahy.Tifrunner.gnm1.ann1.C5KK4K Arachis hypogaea HOM05D003987 ORTHO05D004532 6.2e-50 202.6 440 41.8
AL5G35070 Arabidopsis lyrata HOM05D003987 ORTHO05D004532 1.1e-49 201.8 421 39.2
HanXRQChr01g0001271 Helianthus annuus HOM05D003987 ORTHO05D004532 1.8e-49 201.1 447 41.4
arahy.Tifrunner.gnm1.ann1.84Z36X Arachis hypogaea HOM05D003987 ORTHO05D004532 3.1e-49 200.3 439 41.9
Thhalv10010371m.g Eutrema salsugineum HOM05D003987 ORTHO05D004532 6.8e-49 199.1 421 37.1
Thhalv10016588m.g Eutrema salsugineum HOM05D003987 ORTHO05D004532 1.7e-47 194.5 437 38.7
AT3G54060 Arabidopsis thaliana HOM05D003987 ORTHO05D004532 3.8e-47 193.4 441 38.8
Nitab4.5_0000008g0400 Nicotiana tabacum HOM05D003987 ORTHO05D004532 3.8e-47 193.4 478 38.9
Sp4g20270 Schrenkiella parvula HOM05D003987 ORTHO05D004532 6.4e-47 192.6 450 38.0
AT2G37960 Arabidopsis thaliana HOM05D003987 ORTHO05D004532 3.2e-46 190.3 439 38.5
Aa31LG10G8760 Aethionema arabicum HOM05D003987 ORTHO05D004532 5.4e-46 189.5 451 35.9
Glyma.U031101 Glycine max HOM05D003987 ORTHO05D004532 1.2e-45 188.3 428 37.1
Glyma.01G108800 Glycine max HOM05D003987 ORTHO05D004532 1.6e-45 188.0 428 37.4
Glyma.01G108900 Glycine max HOM05D003987 ORTHO05D004532 2.7e-45 187.2 428 36.9
Sopen10g036150 Solanum pennellii HOM05D003987 ORTHO05D004532 1.3e-44 184.9 439 35.8
BcaB02g09232 Brassica carinata HOM05D003987 ORTHO05D004532 2.3e-44 184.1 445 35.1
AL4G34930 Arabidopsis lyrata HOM05D003987 ORTHO05D004532 3.9e-44 183.3 429 38.5
unitig_749.g14175 Utricularia gibba HOM05D003987 ORTHO05D004532 6.6e-44 182.6 447 34.2
Carub.0004s1992 Capsella rubella HOM05D003987 ORTHO05D004532 1.9e-43 181.0 424 36.8
BcaC02g11934 Brassica carinata HOM05D003987 ORTHO05D004532 3.1e-41 173.7 421 35.4
BraA05t19770Z Brassica rapa HOM05D003987 ORTHO05D004532 4.0e-41 173.3 407 35.4
BolC4t28137H Brassica oleracea HOM05D003987 ORTHO05D004532 6.9e-41 172.6 436 37.2
C04p09710 Brassica napus HOM05D003987 ORTHO05D004532 9.0e-41 172.2 421 34.4
A05p08030 Brassica napus HOM05D003987 ORTHO05D004532 2.6e-40 170.6 407 34.9
BolC4t22577H Brassica oleracea HOM05D003987 ORTHO05D004532 5.8e-40 169.5 413 36.1
C06p21870 Brassica napus HOM05D003987 ORTHO05D004532 9.9e-40 168.7 427 37.5
Solyc09g011820.4 Solanum lycopersicum HOM05D003987 ORTHO05D004532 2.2e-39 167.5 380 39.5
BcaC08g44664 Brassica carinata HOM05D003987 ORTHO05D004532 1.1e-38 165.2 438 37.0
A07p21960 Brassica napus HOM05D003987 ORTHO05D004532 3.2e-38 163.7 433 35.3
FAN05G0535 Fragaria x ananassa HOM05D003987 ORTHO05D004532 4.2e-38 163.3 358 38.3
Nitab4.5_0002152g0110 Nicotiana tabacum HOM05D003987 ORTHO05D004532 7.1e-38 162.5 436 38.8
BraA07t29878Z Brassica rapa HOM05D003987 ORTHO05D004532 1.7e-36 157.9 437 33.4
BcaB02g07750 Brassica carinata HOM05D003987 ORTHO05D004532 1.1e-35 155.2 437 35.7
A04p29100 Brassica napus HOM05D003987 ORTHO05D004532 1.1e-35 155.2 446 37.2
Actinidia01122 Actinidia chinensis HOM05D003987 ORTHO05D004532 2.5e-35 154.1 320 39.7
BraA04t18380Z Brassica rapa HOM05D003987 ORTHO05D004532 4.3e-35 153.3 444 36.3
CDE02G0690 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 5.6e-35 152.9 427 32.1
TPR.G8182 Trifolium pratense HOM05D003987 ORTHO05D004532 2.1e-34 151.0 271 41.3
CDE09G1167 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 4.0e-33 146.7 435 32.4
Glyma.03G074167 Glycine max HOM05D003987 ORTHO05D004532 1.5e-32 144.8 396 34.6
CAN.G351.10 Capsicum annuum HOM05D003987 ORTHO05D004532 3.4e-32 143.7 212 43.9
Glyma.01G153900 Glycine max HOM05D003987 ORTHO05D004532 4.5e-32 143.3 350 37.1
ECA248G1591 Erigeron canadensis HOM05D003987 ORTHO05D004532 2.2e-31 141.0 433 34.2
Carub.0005s2065 Capsella rubella HOM05D003987 ORTHO05D004532 1.2e-29 135.2 357 35.6
MSTRG.19041 Avicennia marina HOM05D003987 ORTHO05D004532 2.1e-29 134.4 290 38.3
CARHR132510 Cardamine hirsuta HOM05D003987 ORTHO05D004532 4.6e-29 133.3 435 35.4
Sp5g18210 Schrenkiella parvula HOM05D003987 ORTHO05D004532 4.6e-29 133.3 421 30.9
Solyc10g086740.3 Solanum lycopersicum HOM05D003987 ORTHO05D004532 3.9e-28 130.2 289 37.4
Eucgr.A00531 Eucalyptus grandis HOM05D003987 ORTHO05D004532 8.7e-28 129.0 173 46.8
unitig_26.g9099 Utricularia gibba HOM05D003987 ORTHO05D004532 4.3e-27 126.7 294 34.7
MSTRG.19040 Avicennia marina HOM05D003987 ORTHO05D004532 8.1e-26 122.5 116 60.3
HPP92_003415 Vanilla planifolia HOM05D003987 ORTHO05D004532 2.2e-23 114.4 435 29.9
TWI74G0508 Tripterygium wilfordii HOM05D003987 ORTHO05D004532 4.9e-23 113.2 453 29.4
Sp5g08320 Schrenkiella parvula HOM05D003987 ORTHO05D004532 1.1e-22 112.1 445 27.9
Solyc10g086750.1 Solanum lycopersicum HOM05D003987 ORTHO05D004532 1.9e-22 111.3 124 55.6
Sabra16G0105800 Salix brachista HOM05D003987 ORTHO05D004532 1.9e-19 101.3 113 50.4
TPR.G8224 Trifolium pratense HOM05D003987 ORTHO05D004532 1.9e-19 101.3 137 53.3
Dinv04008 Davidia involucrata HOM05D003987 ORTHO05D004532 2.5e-19 100.9 104 54.8
ATR0618G159 Amborella trichopoda HOM05D003987 ORTHO05D004532 1.3e-18 98.6 451 28.6
Medtr7g066170 Medicago truncatula HOM05D003987 ORTHO05D004532 2.4e-17 94.4 114 47.4
SEGI_16848 Sequoiadendron giganteum HOM05D003987 ORTHO05D004532 9.0e-17 92.4 500 28.4
Psat6g189000 Pisum sativum HOM05D003987 ORTHO05D004532 2.0e-16 91.3 159 41.5
TPR.G13647 Trifolium pratense HOM05D003987 ORTHO05D004532 9.3e-14 82.4 189 34.4
Rhsim07G0146000 Rhododendron simsii HOM05D003987 ORTHO05D004532 2.3e-12 77.8 216 34.3
Phvul.006G111000 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 5.1e-12 76.6 163 33.7
VMungo1309G3141 Vigna mungo HOM05D014262 ORTHO05D018084 1.1e-11 75.5 184 35.9
Phvul.005G150800 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 3.3e-11 73.9 290 27.9
CDE04G2728 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 4.3e-11 73.6 181 34.3
FAN14G4402 Fragaria x ananassa HOM05D003987 ORTHO05D004532 1.3e-10 72.0 107 38.3
Zm00001eb298020 Zea mays HOM05D003987 ORTHO05D004532 2.8e-10 70.9 449 24.5
Phvul.010G006800 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 1.8e-09 68.2 376 28.2
FAN08G1429 Fragaria x ananassa HOM05D003987 ORTHO05D004532 9.0e-09 65.9 89 47.2
Phvul.010G006900 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 1.5e-08 65.1 429 25.6
Phvul.010G006100 Phaseolus vulgaris HOM05D014262 ORTHO05D004532 3.4e-08 63.9 118 33.1
SHI32881 Sapria himalayana HOM05D003987 ORTHO05D004532 5.9e-08 63.2 59 52.5
VMungo0331G1594 Vigna mungo HOM05D003987 ORTHO05D004532 1.3e-07 62.0 107 42.1
Phvul.008G082101 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 3.8e-07 60.5 185 29.7
TPR.G34870 Trifolium pratense HOM05D003987 ORTHO05D004532 5.0e-07 60.1 377 27.3
VMungo1309G2694 Vigna mungo HOM05D014262 ORTHO05D018084 5.0e-07 60.1 184 32.1
Phvul.008G081900 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 2.5e-06 57.8 188 32.4
BolC6t37375H Brassica oleracea HOM05D003987 ORTHO05D004532 9.4e-06 55.8 73 37.0


User provided reference genes

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